Wall clock time and date at job start Wed Apr 1 2020 03:28:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.46860 * 2 1 4 4 C 1.50704 * 109.46803 * 240.00317 * 2 1 3 5 5 O 1.21280 * 119.99721 * 254.62535 * 4 2 1 6 6 N 1.34771 * 119.99825 * 74.63113 * 4 2 1 7 7 C 1.46505 * 119.99433 * 183.79385 * 6 4 2 8 8 C 1.46491 * 120.00455 * 3.79573 * 6 4 2 9 9 C 1.53940 * 113.73615 * 211.31685 * 8 6 4 10 10 N 1.47958 * 86.18468 * 221.91871 * 9 8 6 11 11 C 1.46897 * 110.99861 * 137.57958 * 10 9 8 12 12 C 1.50705 * 109.46882 * 70.64577 * 11 10 9 13 13 O 1.21292 * 120.00033 * 359.97438 * 12 11 10 14 14 N 1.34777 * 119.99885 * 179.97438 * 12 11 10 15 15 C 1.37092 * 119.99690 * 179.97438 * 14 12 11 16 16 H 1.08000 * 120.00281 * 359.97438 * 15 14 12 17 17 C 1.38958 * 119.99883 * 180.02562 * 15 14 12 18 18 N 1.31410 * 119.99571 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99920 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47191 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47271 * 119.99905 * 19 17 15 22 22 H 1.48500 * 109.46893 * 239.99714 * 19 17 15 23 23 C 1.47966 * 90.75926 * 24.68968 * 10 9 8 24 24 C 1.50696 * 109.47029 * 120.00014 * 2 1 3 25 25 C 1.38233 * 120.00256 * 239.99789 * 24 2 1 26 26 C 1.38228 * 120.00227 * 180.02562 * 25 24 2 27 27 C 1.38238 * 120.00122 * 359.97438 * 26 25 24 28 28 C 1.38231 * 119.99785 * 0.02768 * 27 26 25 29 29 C 1.38237 * 119.99861 * 59.98399 * 24 2 1 30 30 H 1.08998 * 109.46707 * 294.76564 * 1 2 3 31 31 H 1.08998 * 109.47294 * 54.76180 * 1 2 3 32 32 H 1.08997 * 109.46985 * 174.76402 * 1 2 3 33 33 H 1.09005 * 109.47203 * 94.00881 * 7 6 4 34 34 H 1.09000 * 109.46766 * 214.00280 * 7 6 4 35 35 H 1.08993 * 109.47449 * 334.00322 * 7 6 4 36 36 H 1.09001 * 112.94019 * 343.02766 * 8 6 4 37 37 H 1.08993 * 113.75739 * 336.24498 * 9 8 6 38 38 H 1.09008 * 113.75683 * 107.60356 * 9 8 6 39 39 H 1.09002 * 109.47243 * 190.64096 * 11 10 9 40 40 H 1.08995 * 109.47101 * 310.64663 * 11 10 9 41 41 H 0.97003 * 120.00012 * 0.02562 * 14 12 11 42 42 H 0.97003 * 119.99726 * 179.97438 * 18 17 15 43 43 H 1.08999 * 113.75968 * 220.99113 * 23 10 9 44 44 H 1.09001 * 113.85731 * 89.64126 * 23 10 9 45 45 H 1.08003 * 119.99604 * 359.97438 * 25 24 2 46 46 H 1.08002 * 120.00014 * 179.70073 * 26 25 24 47 47 H 1.08000 * 119.99898 * 179.97438 * 27 26 25 48 48 H 1.07999 * 119.99900 * 180.02562 * 28 27 26 49 49 H 1.07994 * 120.00173 * 359.96908 * 29 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2306 5 8 2.4970 -1.8269 -1.1390 6 7 1.9652 -0.1048 -2.4327 7 6 2.3761 -0.8260 -3.6400 8 6 1.4816 1.2743 -2.5323 9 6 0.7529 1.5816 -3.8530 10 7 1.4877 2.8659 -3.8449 11 6 1.9937 3.1913 -5.1850 12 6 0.8398 3.5580 -6.0822 13 8 -0.2928 3.5488 -5.6482 14 7 1.0663 3.8964 -7.3670 15 6 0.0165 4.2295 -8.1834 16 1 -0.9920 4.2204 -7.7971 17 6 0.2499 4.5778 -9.5082 18 7 1.4770 4.5884 -9.9783 19 14 -1.1804 5.0324 -10.6203 20 1 -2.4499 4.9438 -9.8552 21 1 -0.9983 6.4193 -11.1191 22 1 -1.2300 4.0951 -11.7710 23 6 2.5526 2.2739 -3.0053 24 6 2.0323 -0.7104 1.2304 25 6 2.8271 -0.0387 2.1404 26 6 3.2883 -0.6905 3.2687 27 6 2.9543 -2.0139 3.4875 28 6 2.1596 -2.6857 2.5776 29 6 1.6981 -2.0338 1.4493 30 1 -0.3633 0.4305 0.9332 31 1 -0.3634 0.5929 -0.8393 32 1 -0.3633 -1.0234 -0.0938 33 1 1.5042 -1.2918 -4.0994 34 1 2.8281 -0.1276 -4.3442 35 1 3.1014 -1.5951 -3.3747 36 1 0.9397 1.5997 -1.6443 37 1 1.0329 0.9206 -4.6731 38 1 -0.3260 1.6923 -3.7438 39 1 2.6838 4.0324 -5.1184 40 1 2.5136 2.3264 -5.5969 41 1 1.9720 3.9034 -7.7143 42 1 1.6400 4.8312 -10.9032 43 1 2.9117 2.9376 -2.2188 44 1 3.3600 1.8150 -3.5759 45 1 3.0884 0.9952 1.9692 46 1 3.9132 -0.1670 3.9772 47 1 3.3150 -2.5233 4.3689 48 1 1.8983 -3.7195 2.7487 49 1 1.0766 -2.5584 0.7388 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001671188341.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:28:41 Heat of formation + Delta-G solvation = 0.074630 kcal Electronic energy + Delta-G solvation = -29884.286159 eV Core-core repulsion = 25812.754094 eV Total energy + Delta-G solvation = -4071.532065 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.08274 -39.87460 -38.72215 -37.73521 -34.88720 -34.45720 -33.91101 -31.33410 -31.08663 -30.00206 -29.77093 -27.49208 -26.12921 -25.58979 -24.63884 -23.64906 -22.76593 -21.76924 -20.33867 -19.36051 -18.90813 -17.96532 -17.46120 -17.07962 -16.33862 -16.17360 -15.92370 -15.37271 -15.26478 -14.99837 -14.60623 -14.52988 -14.21732 -13.91666 -13.85133 -13.63041 -13.47441 -13.17935 -13.12028 -12.77080 -12.68624 -12.45858 -12.30853 -12.17451 -11.99899 -11.87207 -11.80859 -11.55970 -11.21945 -11.15400 -11.12697 -11.08501 -10.75317 -10.37951 -10.26890 -9.86985 -9.56251 -9.05660 -8.92734 -8.82681 -8.78574 -8.32006 -8.01566 -6.46470 -3.87379 1.12987 1.25513 2.41214 2.73821 3.12921 3.24051 3.30974 3.60190 3.82655 3.92787 4.15566 4.26360 4.32192 4.34060 4.62070 4.64820 4.78741 4.84671 4.87744 4.93835 4.96354 5.09575 5.15664 5.20929 5.28374 5.34213 5.36635 5.37844 5.45148 5.52910 5.57093 5.60297 5.68259 5.69653 5.77090 5.81620 5.86512 5.90169 6.09306 6.16787 6.22863 6.27896 6.34007 6.42931 6.47742 6.80828 7.02945 7.18333 7.50948 7.97295 8.00654 8.55667 9.13070 9.48575 9.99673 10.71232 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.031113 B = 0.001862 C = 0.001856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.721672 B =15036.432495 C =15083.956438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.072 4.072 3 H 0.103 0.897 4 C 0.522 3.478 5 O -0.533 6.533 6 N -0.603 5.603 7 C 0.081 3.919 8 C 0.099 3.901 9 C 0.014 3.986 10 N -0.448 5.448 11 C 0.013 3.987 12 C 0.442 3.558 13 O -0.579 6.579 14 N -0.563 5.563 15 C -0.299 4.299 16 H 0.104 0.896 17 C 0.022 3.978 18 N -0.901 5.901 19 Si 0.929 3.071 20 H -0.268 1.268 21 H -0.281 1.281 22 H -0.282 1.282 23 C -0.016 4.016 24 C -0.071 4.071 25 C -0.112 4.112 26 C -0.126 4.126 27 C -0.121 4.121 28 C -0.125 4.125 29 C -0.079 4.079 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.063 0.937 33 H 0.059 0.941 34 H 0.068 0.932 35 H 0.080 0.920 36 H 0.126 0.874 37 H 0.074 0.926 38 H 0.102 0.898 39 H 0.092 0.908 40 H 0.053 0.947 41 H 0.392 0.608 42 H 0.271 0.729 43 H 0.094 0.906 44 H 0.073 0.927 45 H 0.121 0.879 46 H 0.120 0.880 47 H 0.119 0.881 48 H 0.120 0.880 49 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.943 -10.687 22.072 25.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.094 4.094 3 H 0.121 0.879 4 C 0.310 3.690 5 O -0.409 6.409 6 N -0.336 5.336 7 C -0.062 4.062 8 C -0.006 4.006 9 C -0.115 4.115 10 N -0.170 5.170 11 C -0.119 4.119 12 C 0.228 3.772 13 O -0.463 6.463 14 N -0.200 5.200 15 C -0.429 4.429 16 H 0.122 0.878 17 C -0.180 4.180 18 N -0.542 5.542 19 Si 0.757 3.243 20 H -0.192 1.192 21 H -0.207 1.207 22 H -0.208 1.208 23 C -0.146 4.146 24 C -0.072 4.072 25 C -0.130 4.130 26 C -0.144 4.144 27 C -0.139 4.139 28 C -0.143 4.143 29 C -0.097 4.097 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.086 0.914 35 H 0.099 0.901 36 H 0.144 0.856 37 H 0.093 0.907 38 H 0.120 0.880 39 H 0.111 0.889 40 H 0.072 0.928 41 H 0.225 0.775 42 H 0.081 0.919 43 H 0.113 0.887 44 H 0.091 0.909 45 H 0.139 0.861 46 H 0.138 0.862 47 H 0.137 0.863 48 H 0.138 0.862 49 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 4.165 -10.639 22.379 25.127 hybrid contribution 0.552 -0.249 -1.483 1.602 sum 4.717 -10.888 20.896 24.030 Atomic orbital electron populations 1.21855 0.91478 1.03288 1.03458 1.20300 0.98094 1.00222 0.90760 0.87930 1.20488 0.77996 0.86254 0.84268 1.90697 1.44904 1.19558 1.85782 1.47882 1.64658 1.14061 1.06984 1.21651 1.00800 0.97224 0.86498 1.23512 0.96251 0.79926 1.00896 1.24237 1.01868 0.90491 0.94906 1.68375 1.12432 1.26129 1.10108 1.22448 0.97626 1.01495 0.90356 1.19644 0.89668 0.84858 0.83068 1.90523 1.23255 1.57877 1.74640 1.41875 1.10243 1.59449 1.08422 1.19746 0.89665 1.42299 0.91141 0.87838 1.25273 0.97635 0.97454 0.97590 1.69618 1.19358 1.48656 1.16593 0.85798 0.80949 0.78027 0.79568 1.19201 1.20704 1.20759 1.24535 0.95263 0.96174 0.98646 1.19342 0.98463 0.94527 0.94819 1.21028 0.97618 0.99851 0.94510 1.21065 1.00538 0.95040 0.97736 1.21142 0.98522 0.94867 0.99351 1.21135 0.98596 0.99874 0.94720 1.20968 0.98751 0.93751 0.96203 0.90883 0.90993 0.91764 0.92285 0.91373 0.90109 0.85604 0.90741 0.87976 0.88938 0.92849 0.77503 0.91883 0.88738 0.90898 0.86093 0.86158 0.86331 0.86221 0.86076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 8.63 37.16 0.32 -0.83 16 2 C -0.07 -0.67 2.04 -92.92 -0.19 -0.86 16 3 H 0.10 0.80 6.87 -51.93 -0.36 0.44 16 4 C 0.52 6.15 6.84 -10.99 -0.08 6.07 16 5 O -0.53 -7.91 14.18 5.56 0.08 -7.83 16 6 N -0.60 -6.58 3.08 -175.26 -0.54 -7.12 16 7 C 0.08 0.86 9.07 59.85 0.54 1.40 16 8 C 0.10 1.05 3.67 -69.62 -0.26 0.79 16 9 C 0.01 0.20 6.14 -2.77 -0.02 0.18 16 10 N -0.45 -6.75 5.95 -239.85 -1.43 -8.17 16 11 C 0.01 0.22 5.31 -4.98 -0.03 0.19 16 12 C 0.44 10.07 7.59 -10.98 -0.08 9.98 16 13 O -0.58 -15.11 15.12 5.55 0.08 -15.02 16 14 N -0.56 -13.91 5.29 -10.96 -0.06 -13.97 16 15 C -0.30 -8.18 9.68 -14.93 -0.14 -8.32 16 16 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 17 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 18 N -0.90 -24.14 13.05 55.50 0.72 -23.41 16 19 Si 0.93 20.74 29.55 -169.99 -5.02 15.72 16 20 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 21 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 22 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 23 C -0.02 -0.18 7.53 -2.76 -0.02 -0.20 16 24 C -0.07 -0.72 4.55 -104.63 -0.48 -1.20 16 25 C -0.11 -1.02 9.67 -39.59 -0.38 -1.40 16 26 C -0.13 -1.07 10.05 -39.58 -0.40 -1.46 16 27 C -0.12 -1.03 10.05 -39.58 -0.40 -1.43 16 28 C -0.13 -1.17 10.05 -39.58 -0.40 -1.57 16 29 C -0.08 -0.83 7.89 -39.58 -0.31 -1.15 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.56 6.31 -51.93 -0.33 0.24 16 32 H 0.06 0.54 7.58 -51.93 -0.39 0.15 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.67 6.59 -51.93 -0.34 0.33 16 35 H 0.08 0.90 7.26 -51.93 -0.38 0.52 16 36 H 0.13 1.17 4.76 -51.93 -0.25 0.92 16 37 H 0.07 1.05 6.16 -51.93 -0.32 0.73 16 38 H 0.10 1.58 8.09 -51.92 -0.42 1.16 16 39 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 40 H 0.05 0.79 7.69 -51.93 -0.40 0.40 16 41 H 0.39 9.26 7.90 -40.82 -0.32 8.94 16 42 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 43 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.07 0.77 6.96 -51.93 -0.36 0.41 16 45 H 0.12 0.87 7.95 -52.48 -0.42 0.46 16 46 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 47 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 48 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 49 H 0.12 1.31 7.22 -52.49 -0.38 0.93 16 LS Contribution 395.32 15.07 5.96 5.96 Total: -1.00 -32.91 395.32 -9.75 -42.65 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: -7.13 Total: 10.52 kcal Atomic # 6 Polarization: 3.09 SS G_CDS: -2.41 Total: 0.68 kcal Atomic # 7 Polarization: -51.38 SS G_CDS: -1.30 Total: -52.68 kcal Atomic # 8 Polarization: -23.02 SS G_CDS: 0.16 Total: -22.86 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -32.91 -9.75 -42.65 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671188341.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.730 kcal (2) G-P(sol) polarization free energy of solvation -32.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.655 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds