Wall clock time and date at job start Wed Apr 1 2020 03:28:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.46860 * 2 1 4 4 C 1.50704 * 109.46803 * 240.00317 * 2 1 3 5 5 O 1.21280 * 119.99721 * 254.62535 * 4 2 1 6 6 N 1.34771 * 119.99825 * 74.63113 * 4 2 1 7 7 C 1.46505 * 119.99433 * 183.79385 * 6 4 2 8 8 C 1.46491 * 120.00455 * 3.79573 * 6 4 2 9 9 C 1.53940 * 113.73615 * 211.31685 * 8 6 4 10 10 N 1.47958 * 86.18468 * 221.91871 * 9 8 6 11 11 C 1.46897 * 110.99861 * 137.57958 * 10 9 8 12 12 C 1.50705 * 109.46882 * 70.64577 * 11 10 9 13 13 O 1.21292 * 120.00033 * 359.97438 * 12 11 10 14 14 N 1.34777 * 119.99885 * 179.97438 * 12 11 10 15 15 C 1.37092 * 119.99690 * 179.97438 * 14 12 11 16 16 H 1.08000 * 120.00281 * 359.97438 * 15 14 12 17 17 C 1.38958 * 119.99883 * 180.02562 * 15 14 12 18 18 N 1.31410 * 119.99571 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99920 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47191 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47271 * 119.99905 * 19 17 15 22 22 H 1.48500 * 109.46893 * 239.99714 * 19 17 15 23 23 C 1.47966 * 90.75926 * 24.68968 * 10 9 8 24 24 C 1.50696 * 109.47029 * 120.00014 * 2 1 3 25 25 C 1.38233 * 120.00256 * 239.99789 * 24 2 1 26 26 C 1.38228 * 120.00227 * 180.02562 * 25 24 2 27 27 C 1.38238 * 120.00122 * 359.97438 * 26 25 24 28 28 C 1.38231 * 119.99785 * 0.02768 * 27 26 25 29 29 C 1.38237 * 119.99861 * 59.98399 * 24 2 1 30 30 H 1.08998 * 109.46707 * 294.76564 * 1 2 3 31 31 H 1.08998 * 109.47294 * 54.76180 * 1 2 3 32 32 H 1.08997 * 109.46985 * 174.76402 * 1 2 3 33 33 H 1.09005 * 109.47203 * 94.00881 * 7 6 4 34 34 H 1.09000 * 109.46766 * 214.00280 * 7 6 4 35 35 H 1.08993 * 109.47449 * 334.00322 * 7 6 4 36 36 H 1.09001 * 112.94019 * 343.02766 * 8 6 4 37 37 H 1.08993 * 113.75739 * 336.24498 * 9 8 6 38 38 H 1.09008 * 113.75683 * 107.60356 * 9 8 6 39 39 H 1.09002 * 109.47243 * 190.64096 * 11 10 9 40 40 H 1.08995 * 109.47101 * 310.64663 * 11 10 9 41 41 H 0.97003 * 120.00012 * 0.02562 * 14 12 11 42 42 H 0.97003 * 119.99726 * 179.97438 * 18 17 15 43 43 H 1.08999 * 113.75968 * 220.99113 * 23 10 9 44 44 H 1.09001 * 113.85731 * 89.64126 * 23 10 9 45 45 H 1.08003 * 119.99604 * 359.97438 * 25 24 2 46 46 H 1.08002 * 120.00014 * 179.70073 * 26 25 24 47 47 H 1.08000 * 119.99898 * 179.97438 * 27 26 25 48 48 H 1.07999 * 119.99900 * 180.02562 * 28 27 26 49 49 H 1.07994 * 120.00173 * 359.96908 * 29 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2306 5 8 2.4970 -1.8269 -1.1390 6 7 1.9652 -0.1048 -2.4327 7 6 2.3761 -0.8260 -3.6400 8 6 1.4816 1.2743 -2.5323 9 6 0.7529 1.5816 -3.8530 10 7 1.4877 2.8659 -3.8449 11 6 1.9937 3.1913 -5.1850 12 6 0.8398 3.5580 -6.0822 13 8 -0.2928 3.5488 -5.6482 14 7 1.0663 3.8964 -7.3670 15 6 0.0165 4.2295 -8.1834 16 1 -0.9920 4.2204 -7.7971 17 6 0.2499 4.5778 -9.5082 18 7 1.4770 4.5884 -9.9783 19 14 -1.1804 5.0324 -10.6203 20 1 -2.4499 4.9438 -9.8552 21 1 -0.9983 6.4193 -11.1191 22 1 -1.2300 4.0951 -11.7710 23 6 2.5526 2.2739 -3.0053 24 6 2.0323 -0.7104 1.2304 25 6 2.8271 -0.0387 2.1404 26 6 3.2883 -0.6905 3.2687 27 6 2.9543 -2.0139 3.4875 28 6 2.1596 -2.6857 2.5776 29 6 1.6981 -2.0338 1.4493 30 1 -0.3633 0.4305 0.9332 31 1 -0.3634 0.5929 -0.8393 32 1 -0.3633 -1.0234 -0.0938 33 1 1.5042 -1.2918 -4.0994 34 1 2.8281 -0.1276 -4.3442 35 1 3.1014 -1.5951 -3.3747 36 1 0.9397 1.5997 -1.6443 37 1 1.0329 0.9206 -4.6731 38 1 -0.3260 1.6923 -3.7438 39 1 2.6838 4.0324 -5.1184 40 1 2.5136 2.3264 -5.5969 41 1 1.9720 3.9034 -7.7143 42 1 1.6400 4.8312 -10.9032 43 1 2.9117 2.9376 -2.2188 44 1 3.3600 1.8150 -3.5759 45 1 3.0884 0.9952 1.9692 46 1 3.9132 -0.1670 3.9772 47 1 3.3150 -2.5233 4.3689 48 1 1.8983 -3.7195 2.7487 49 1 1.0766 -2.5584 0.7388 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001671188341.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:28:40 Heat of formation + Delta-G solvation = -22.439336 kcal Electronic energy + Delta-G solvation = -29885.262438 eV Core-core repulsion = 25812.754094 eV Total energy + Delta-G solvation = -4072.508344 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.03782 -40.86969 -39.77774 -39.22519 -36.09689 -35.70665 -35.17174 -33.29680 -31.74397 -31.24059 -30.52305 -28.37228 -27.40810 -26.96235 -25.59215 -24.90644 -23.43671 -22.55396 -21.45861 -20.87511 -19.99434 -19.73247 -18.38995 -17.86586 -17.81440 -17.18052 -16.91833 -16.57376 -16.43111 -16.01601 -15.93328 -15.62594 -15.59957 -15.23666 -14.92567 -14.59631 -14.34826 -14.13098 -14.09508 -13.70318 -13.66642 -13.55768 -13.50742 -13.26853 -13.08475 -13.04849 -12.86597 -12.84266 -12.55536 -12.41016 -12.16476 -12.12619 -11.85749 -11.82180 -11.77495 -11.50529 -10.78896 -10.33584 -10.01692 -9.79484 -9.73634 -9.72311 -9.60429 -8.47305 -5.95562 0.45352 0.57673 1.35948 1.41680 1.50854 1.55347 1.84849 2.04888 2.28593 2.80917 2.95280 3.19353 3.25230 3.42918 3.45572 3.61556 3.74277 3.94899 4.07824 4.15350 4.23575 4.24998 4.27126 4.30083 4.35195 4.38538 4.43318 4.50813 4.54755 4.64852 4.68348 4.70022 4.79458 4.82132 4.87670 4.89224 4.97985 5.13388 5.20259 5.22875 5.32244 5.35272 5.41413 5.61580 5.67515 5.73779 5.84051 6.04221 6.15357 6.29516 6.59559 7.07188 7.12705 7.55997 8.11365 8.70252 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.031113 B = 0.001862 C = 0.001856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.721672 B =15036.432495 C =15083.956438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.068 4.068 3 H 0.124 0.876 4 C 0.520 3.480 5 O -0.568 6.568 6 N -0.600 5.600 7 C 0.079 3.921 8 C 0.118 3.882 9 C 0.007 3.993 10 N -0.470 5.470 11 C 0.025 3.975 12 C 0.441 3.559 13 O -0.616 6.616 14 N -0.575 5.575 15 C -0.331 4.331 16 H 0.079 0.921 17 C -0.013 4.013 18 N -0.920 5.920 19 Si 0.991 3.009 20 H -0.273 1.273 21 H -0.271 1.271 22 H -0.272 1.272 23 C -0.006 4.006 24 C -0.085 4.085 25 C -0.120 4.120 26 C -0.131 4.131 27 C -0.126 4.126 28 C -0.138 4.138 29 C -0.099 4.099 30 H 0.086 0.914 31 H 0.074 0.926 32 H 0.053 0.947 33 H 0.056 0.944 34 H 0.078 0.922 35 H 0.073 0.927 36 H 0.144 0.856 37 H 0.070 0.930 38 H 0.079 0.921 39 H 0.111 0.889 40 H 0.076 0.924 41 H 0.396 0.604 42 H 0.277 0.723 43 H 0.119 0.881 44 H 0.083 0.917 45 H 0.141 0.859 46 H 0.144 0.856 47 H 0.140 0.860 48 H 0.130 0.870 49 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.098 -9.961 23.324 26.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.089 4.089 3 H 0.142 0.858 4 C 0.309 3.691 5 O -0.446 6.446 6 N -0.332 5.332 7 C -0.063 4.063 8 C 0.013 3.987 9 C -0.122 4.122 10 N -0.193 5.193 11 C -0.106 4.106 12 C 0.228 3.772 13 O -0.502 6.502 14 N -0.212 5.212 15 C -0.460 4.460 16 H 0.097 0.903 17 C -0.213 4.213 18 N -0.561 5.561 19 Si 0.815 3.185 20 H -0.198 1.198 21 H -0.197 1.197 22 H -0.197 1.197 23 C -0.136 4.136 24 C -0.086 4.086 25 C -0.138 4.138 26 C -0.148 4.148 27 C -0.144 4.144 28 C -0.156 4.156 29 C -0.117 4.117 30 H 0.105 0.895 31 H 0.092 0.908 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.096 0.904 35 H 0.092 0.908 36 H 0.162 0.838 37 H 0.088 0.912 38 H 0.098 0.902 39 H 0.129 0.871 40 H 0.094 0.906 41 H 0.229 0.771 42 H 0.086 0.914 43 H 0.137 0.863 44 H 0.101 0.899 45 H 0.159 0.841 46 H 0.162 0.838 47 H 0.158 0.842 48 H 0.148 0.852 49 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 5.342 -9.908 23.633 26.177 hybrid contribution 0.197 -0.526 -1.806 1.892 sum 5.539 -10.433 21.827 24.818 Atomic orbital electron populations 1.21838 0.90778 1.02835 1.04258 1.20339 0.98555 1.00772 0.89185 0.85795 1.20960 0.77250 0.85870 0.84981 1.90683 1.46531 1.21140 1.86295 1.47908 1.64215 1.14111 1.06967 1.21666 1.00635 0.97381 0.86651 1.23392 0.95646 0.79720 0.99897 1.24203 1.00863 0.90379 0.96790 1.68367 1.14437 1.27146 1.09329 1.22338 0.95062 1.03067 0.90172 1.20727 0.90910 0.82681 0.82865 1.90496 1.25550 1.58865 1.75301 1.41949 1.09813 1.60309 1.09151 1.19677 0.89533 1.44402 0.92403 0.90319 1.26016 1.00144 0.96849 0.98290 1.69674 1.20593 1.48703 1.17173 0.84892 0.77688 0.78212 0.77692 1.19795 1.19667 1.19708 1.24615 0.94578 0.96096 0.98280 1.19496 0.99099 0.94510 0.95449 1.21327 0.97143 1.00877 0.94413 1.21428 1.00326 0.95132 0.97944 1.21461 0.97969 0.95220 0.99775 1.21370 0.98907 1.00640 0.94718 1.21015 0.99576 0.94456 0.96695 0.89510 0.90757 0.92817 0.92510 0.90362 0.90791 0.83838 0.91198 0.90247 0.87064 0.90604 0.77051 0.91353 0.86319 0.89870 0.84076 0.83831 0.84183 0.85162 0.87486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 8.63 71.98 0.62 -1.47 16 2 C -0.07 -1.15 2.04 -12.28 -0.03 -1.17 16 3 H 0.12 1.54 6.87 -2.39 -0.02 1.52 16 4 C 0.52 11.79 6.84 87.66 0.60 12.39 16 5 O -0.57 -16.92 14.18 -3.03 -0.04 -16.97 16 6 N -0.60 -12.31 3.08 -826.80 -2.55 -14.86 16 7 C 0.08 1.62 9.07 127.77 1.16 2.78 16 8 C 0.12 2.26 3.67 46.56 0.17 2.43 16 9 C 0.01 0.20 6.14 86.41 0.53 0.73 16 10 N -0.47 -13.30 5.95 -912.76 -5.43 -18.73 16 11 C 0.03 0.81 5.31 85.56 0.45 1.26 16 12 C 0.44 20.14 7.59 87.66 0.67 20.81 16 13 O -0.62 -32.84 15.12 -3.07 -0.05 -32.88 16 14 N -0.57 -28.73 5.29 -306.98 -1.62 -30.35 16 15 C -0.33 -18.46 9.68 84.04 0.81 -17.64 16 16 H 0.08 4.70 7.16 -2.91 -0.02 4.68 16 17 C -0.01 -0.70 5.50 84.93 0.47 -0.24 16 18 N -0.92 -49.00 13.05 21.67 0.28 -48.72 16 19 Si 0.99 42.48 29.55 68.60 2.03 44.50 16 20 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 21 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 22 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 23 C -0.01 -0.12 7.53 86.40 0.65 0.53 16 24 C -0.09 -1.63 4.55 -19.87 -0.09 -1.72 16 25 C -0.12 -1.92 9.67 22.27 0.22 -1.70 16 26 C -0.13 -1.91 10.05 22.27 0.22 -1.69 16 27 C -0.13 -1.95 10.05 22.27 0.22 -1.72 16 28 C -0.14 -2.53 10.05 22.27 0.22 -2.31 16 29 C -0.10 -2.11 7.89 22.27 0.18 -1.93 16 30 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.07 1.06 6.31 -2.39 -0.02 1.05 16 32 H 0.05 0.91 7.58 -2.39 -0.02 0.90 16 33 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 34 H 0.08 1.43 6.59 -2.39 -0.02 1.41 16 35 H 0.07 1.64 7.26 -2.39 -0.02 1.62 16 36 H 0.14 2.28 4.76 -2.39 -0.01 2.27 16 37 H 0.07 1.94 6.16 -2.39 -0.01 1.92 16 38 H 0.08 2.50 8.09 -2.38 -0.02 2.48 16 39 H 0.11 3.15 8.14 -2.39 -0.02 3.14 16 40 H 0.08 2.09 7.69 -2.39 -0.02 2.07 16 41 H 0.40 18.78 7.90 -92.71 -0.73 18.05 16 42 H 0.28 13.80 8.31 -92.71 -0.77 13.03 16 43 H 0.12 1.76 8.14 -2.39 -0.02 1.74 16 44 H 0.08 1.46 6.96 -2.39 -0.02 1.44 16 45 H 0.14 1.59 7.95 -2.91 -0.02 1.56 16 46 H 0.14 1.36 8.06 -2.91 -0.02 1.34 16 47 H 0.14 1.45 8.06 -2.91 -0.02 1.43 16 48 H 0.13 1.93 8.06 -2.91 -0.02 1.91 16 49 H 0.11 2.47 7.22 -2.91 -0.02 2.45 16 Total: -1.00 -72.44 395.32 -0.06 -72.51 By element: Atomic # 1 Polarization: 35.92 SS G_CDS: 0.24 Total: 36.17 kcal Atomic # 6 Polarization: 2.26 SS G_CDS: 7.08 Total: 9.34 kcal Atomic # 7 Polarization: -103.34 SS G_CDS: -9.32 Total: -112.66 kcal Atomic # 8 Polarization: -49.76 SS G_CDS: -0.09 Total: -49.85 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.50 kcal Total: -72.44 -0.06 -72.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671188341.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.067 kcal (2) G-P(sol) polarization free energy of solvation -72.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds