Wall clock time and date at job start Wed Apr 1 2020 02:55:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 110.38729 * 2 1 4 4 C 1.54384 * 110.34283 * 122.23054 * 2 1 3 5 5 N 1.48143 * 104.62065 * 142.73967 * 4 2 1 6 6 C 1.34769 * 127.84170 * 140.39360 * 5 4 2 7 7 O 1.21281 * 120.00155 * 179.97438 * 6 5 4 8 8 C 1.50701 * 119.99961 * 359.97438 * 6 5 4 9 9 C 1.50705 * 109.47323 * 180.02562 * 8 6 5 10 10 C 1.38360 * 119.84646 * 269.72815 * 9 8 6 11 11 C 1.37963 * 120.13971 * 179.72281 * 10 9 8 12 12 C 1.39574 * 119.85305 * 0.54528 * 11 10 9 13 13 C 1.47849 * 120.14224 * 179.70428 * 12 11 10 14 14 N 1.34776 * 120.00142 * 0.02562 * 13 12 11 15 15 O 1.21552 * 119.99692 * 180.02562 * 13 12 11 16 16 C 1.39574 * 119.71086 * 359.72614 * 12 11 10 17 17 C 1.37952 * 119.85441 * 0.02562 * 16 12 11 18 18 C 1.48151 * 104.32040 * 320.41512 * 5 4 2 19 19 C 1.54281 * 110.34372 * 237.76803 * 2 1 3 20 20 H 1.09005 * 110.34282 * 122.14983 * 19 2 1 21 21 C 1.53004 * 110.34432 * 359.97438 * 19 2 1 22 22 N 1.46499 * 109.47198 * 175.00023 * 21 19 2 23 23 C 1.36939 * 119.99933 * 180.27608 * 22 21 19 24 24 H 1.08001 * 119.99700 * 359.72658 * 23 22 21 25 25 C 1.38810 * 120.00095 * 179.71972 * 23 22 21 26 26 N 1.31624 * 119.99740 * 0.02562 * 25 23 22 27 27 Si 1.86796 * 120.00044 * 179.97438 * 25 23 22 28 28 H 1.48501 * 109.47173 * 60.00435 * 27 25 23 29 29 H 1.48497 * 109.47172 * 180.02562 * 27 25 23 30 30 H 1.48506 * 109.47132 * 300.00314 * 27 25 23 31 31 H 1.09002 * 109.46810 * 182.22987 * 1 2 3 32 32 H 1.09001 * 109.46892 * 302.23152 * 1 2 3 33 33 H 1.09001 * 109.47136 * 62.23259 * 1 2 3 34 34 H 1.09008 * 110.40676 * 261.52406 * 4 2 1 35 35 H 1.09001 * 110.40797 * 23.95001 * 4 2 1 36 36 H 1.08999 * 109.47109 * 300.00038 * 8 6 5 37 37 H 1.08993 * 109.47271 * 59.99929 * 8 6 5 38 38 H 1.08005 * 119.93240 * 359.97438 * 10 9 8 39 39 H 1.08005 * 120.07141 * 180.24778 * 11 10 9 40 40 H 0.97008 * 119.99742 * 0.02562 * 14 13 12 41 41 H 0.96996 * 120.00199 * 179.97438 * 14 13 12 42 42 H 1.07997 * 120.07288 * 179.97438 * 16 12 11 43 43 H 1.08002 * 119.93048 * 179.97438 * 17 16 12 44 44 H 1.08998 * 110.40618 * 280.80042 * 18 5 4 45 45 H 1.08998 * 110.40357 * 158.37108 * 18 5 4 46 46 H 1.09009 * 109.46730 * 54.99810 * 21 19 2 47 47 H 1.08998 * 109.46846 * 295.00355 * 21 19 2 48 48 H 0.97001 * 119.99790 * 359.97438 * 22 21 19 49 49 H 0.96998 * 119.99409 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9098 1.0218 0.0000 4 6 2.0667 -0.7720 1.2245 5 7 3.2665 -1.4816 0.7227 6 6 4.4425 -1.6660 1.3545 7 8 5.3366 -2.2748 0.8060 8 6 4.6467 -1.1157 2.7425 9 6 6.0356 -1.4557 3.2185 10 6 6.2578 -2.6343 3.9082 11 6 7.5279 -2.9543 4.3417 12 6 8.5876 -2.0807 4.0931 13 6 9.9500 -2.4141 4.5606 14 7 10.1709 -3.5641 5.2279 15 8 10.8709 -1.6511 4.3430 16 6 8.3554 -0.8906 3.4017 17 6 7.0816 -0.5850 2.9692 18 6 2.8802 -1.9422 -0.6314 19 6 2.0664 -0.7715 -1.2237 20 1 2.7081 -0.1282 -1.8258 21 6 0.9062 -1.3041 -2.0671 22 7 1.4329 -1.9285 -3.2832 23 6 0.5742 -2.4744 -4.1996 24 1 -0.4911 -2.4486 -4.0236 25 6 1.0729 -3.0610 -5.3546 26 7 2.3712 -3.0928 -5.5688 27 14 -0.0985 -3.8063 -6.6043 28 1 -1.0217 -2.7564 -7.1050 29 1 0.6788 -4.3649 -7.7396 30 1 -0.8837 -4.8905 -5.9616 31 1 -0.3633 -1.0269 0.0400 32 1 -0.3633 0.5481 0.8693 33 1 -0.3633 0.4788 -0.9093 34 1 2.3401 -0.0794 2.0206 35 1 1.3235 -1.4860 1.5793 36 1 4.5237 -0.0328 2.7257 37 1 3.9130 -1.5541 3.4187 38 1 5.4361 -3.3073 4.1041 39 1 7.7008 -3.8766 4.8765 40 1 9.4360 -4.1731 5.4011 41 1 11.0648 -3.7830 5.5342 42 1 9.1710 -0.2102 3.2065 43 1 6.9004 0.3356 2.4344 44 1 2.2640 -2.8389 -0.5664 45 1 3.7673 -2.1324 -1.2354 46 1 0.2461 -0.4801 -2.3383 47 1 0.3480 -2.0427 -1.4918 48 1 2.3897 -1.9514 -3.4413 49 1 2.7196 -3.5030 -6.3757 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001672338786.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:04 Heat of formation + Delta-G solvation = -35.563823 kcal Electronic energy + Delta-G solvation = -29209.307873 eV Core-core repulsion = 25136.230408 eV Total energy + Delta-G solvation = -4073.077465 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.60131 -40.03248 -38.77370 -37.76031 -34.66497 -34.28581 -33.12989 -32.78114 -31.21191 -31.17794 -29.46385 -28.14519 -26.44956 -25.16819 -23.73361 -22.99025 -22.87365 -22.06354 -20.75489 -19.32770 -18.89639 -18.51556 -17.35059 -17.21028 -16.83237 -16.06639 -15.95742 -15.54757 -15.35515 -15.05979 -14.97336 -14.81336 -14.58870 -13.94416 -13.79849 -13.72613 -13.63751 -13.44167 -13.03950 -12.69208 -12.42143 -12.29813 -12.12838 -12.04100 -11.91372 -11.84007 -11.73849 -11.33713 -10.98441 -10.84708 -10.52649 -10.45970 -10.40371 -10.22666 -10.09713 -9.97460 -9.88647 -9.67835 -9.26746 -9.05487 -8.86083 -8.67714 -6.91976 -5.75518 -3.04950 0.50590 1.10423 2.49845 2.61613 2.98710 3.14167 3.44020 3.48224 3.49874 3.59196 4.25369 4.39733 4.43713 4.52615 4.56805 4.61224 4.65964 4.78720 4.90195 4.97054 5.01200 5.15165 5.27837 5.30507 5.38001 5.44817 5.50605 5.57108 5.59828 5.68926 5.75966 5.79940 5.91465 5.94436 6.01600 6.06381 6.12190 6.15567 6.22032 6.30461 6.38371 6.40230 6.49819 6.57421 6.73088 6.83323 6.93884 7.59120 7.69009 7.88489 8.16291 8.42848 9.53720 10.11479 10.45329 11.47029 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.015098 B = 0.001959 C = 0.001799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.148409 B =14292.458639 C =15562.513999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.098 4.098 3 H 0.078 0.922 4 C 0.103 3.897 5 N -0.625 5.625 6 C 0.532 3.468 7 O -0.530 6.530 8 C -0.103 4.103 9 C -0.034 4.034 10 C -0.113 4.113 11 C -0.084 4.084 12 C -0.145 4.145 13 C 0.565 3.435 14 N -0.852 5.852 15 O -0.542 6.542 16 C -0.055 4.055 17 C -0.112 4.112 18 C 0.116 3.884 19 C -0.105 4.105 20 H 0.080 0.920 21 C 0.162 3.838 22 N -0.734 5.734 23 C -0.242 4.242 24 H 0.069 0.931 25 C -0.014 4.014 26 N -0.932 5.932 27 Si 0.907 3.093 28 H -0.286 1.286 29 H -0.291 1.291 30 H -0.286 1.286 31 H 0.063 0.937 32 H 0.050 0.950 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.105 0.895 37 H 0.104 0.896 38 H 0.128 0.872 39 H 0.126 0.874 40 H 0.401 0.599 41 H 0.404 0.596 42 H 0.137 0.863 43 H 0.130 0.870 44 H 0.077 0.923 45 H 0.084 0.916 46 H 0.027 0.973 47 H 0.022 0.978 48 H 0.383 0.617 49 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.098 4.407 26.963 27.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.118 4.118 3 H 0.096 0.904 4 C -0.020 4.020 5 N -0.359 5.359 6 C 0.320 3.680 7 O -0.406 6.406 8 C -0.143 4.143 9 C -0.034 4.034 10 C -0.131 4.131 11 C -0.102 4.102 12 C -0.148 4.148 13 C 0.352 3.648 14 N -0.416 5.416 15 O -0.420 6.420 16 C -0.074 4.074 17 C -0.130 4.130 18 C -0.006 4.006 19 C -0.125 4.125 20 H 0.099 0.901 21 C 0.035 3.965 22 N -0.378 5.378 23 C -0.373 4.373 24 H 0.087 0.913 25 C -0.210 4.210 26 N -0.580 5.580 27 Si 0.738 3.262 28 H -0.213 1.213 29 H -0.217 1.217 30 H -0.213 1.213 31 H 0.082 0.918 32 H 0.069 0.931 33 H 0.087 0.913 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.123 0.877 37 H 0.123 0.877 38 H 0.146 0.854 39 H 0.144 0.856 40 H 0.231 0.769 41 H 0.235 0.765 42 H 0.154 0.846 43 H 0.148 0.852 44 H 0.095 0.905 45 H 0.102 0.898 46 H 0.044 0.956 47 H 0.040 0.960 48 H 0.217 0.783 49 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 6.028 4.586 26.410 27.475 hybrid contribution -0.424 -0.913 -0.672 1.210 sum 5.604 3.673 25.738 26.596 Atomic orbital electron populations 1.21902 0.93890 1.02642 1.01923 1.22057 0.96562 0.99160 0.94054 0.90366 1.22554 0.87017 0.95483 0.96923 1.49079 1.12649 1.55766 1.18393 1.19968 0.80710 0.80265 0.87052 1.90774 1.41030 1.41404 1.67437 1.20735 0.95375 1.03421 0.94773 1.19552 0.94271 0.94334 0.95268 1.20924 0.97102 0.96330 0.98742 1.21184 0.92350 0.98175 0.98516 1.19833 0.92849 0.97634 1.04480 1.18326 0.88485 0.81027 0.76966 1.43755 1.14637 1.22878 1.60339 1.90816 1.44898 1.49556 1.56695 1.21219 0.97116 0.95182 0.93881 1.21011 0.92060 1.00174 0.99753 1.22443 0.99627 0.96995 0.81495 1.22339 0.98162 0.96323 0.95692 0.90121 1.20851 0.92891 0.95050 0.87739 1.42417 1.06737 1.69084 1.19612 1.19148 0.89822 1.29859 0.98443 0.91255 1.24760 0.95845 1.01779 0.98590 1.69654 1.10576 1.49920 1.27839 0.86272 0.79789 0.79016 0.81106 1.21293 1.21707 1.21293 0.91753 0.93113 0.91342 0.90646 0.90720 0.87691 0.87732 0.85380 0.85645 0.76929 0.76471 0.84565 0.85242 0.90508 0.89776 0.95565 0.95986 0.78298 0.93415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 7.94 37.16 0.29 -1.17 16 2 C -0.10 -1.06 3.66 -89.22 -0.33 -1.39 16 3 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 4 C 0.10 0.96 6.46 -2.41 -0.02 0.95 16 5 N -0.62 -8.03 3.32 -169.31 -0.56 -8.59 16 6 C 0.53 7.11 7.91 -10.99 -0.09 7.02 16 7 O -0.53 -9.59 16.30 5.56 0.09 -9.50 16 8 C -0.10 -0.88 4.80 -29.03 -0.14 -1.02 16 9 C -0.03 -0.33 4.38 -104.53 -0.46 -0.79 16 10 C -0.11 -1.00 9.68 -39.64 -0.38 -1.39 16 11 C -0.08 -0.68 9.54 -39.18 -0.37 -1.06 16 12 C -0.14 -1.47 5.87 -104.97 -0.62 -2.08 16 13 C 0.57 5.91 8.05 -12.33 -0.10 5.81 16 14 N -0.85 -5.09 8.82 30.53 0.27 -4.82 16 15 O -0.54 -7.77 17.18 5.32 0.09 -7.67 16 16 C -0.06 -0.59 9.60 -39.19 -0.38 -0.97 16 17 C -0.11 -1.13 9.68 -39.64 -0.38 -1.52 16 18 C 0.12 1.85 6.41 -2.41 -0.02 1.84 16 19 C -0.11 -1.60 3.10 -89.22 -0.28 -1.87 16 20 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 21 C 0.16 3.02 4.40 -4.04 -0.02 3.01 16 22 N -0.73 -18.16 5.48 -59.90 -0.33 -18.49 16 23 C -0.24 -6.67 9.99 -15.06 -0.15 -6.82 16 24 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 25 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 26 N -0.93 -28.38 13.06 55.49 0.72 -27.65 16 27 Si 0.91 22.38 29.55 -169.99 -5.02 17.36 16 28 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 29 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 30 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 31 H 0.06 0.68 6.90 -51.93 -0.36 0.33 16 32 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.76 6.67 -51.93 -0.35 0.41 16 34 H 0.08 0.49 7.30 -51.92 -0.38 0.11 16 35 H 0.07 0.64 7.83 -51.93 -0.41 0.24 16 36 H 0.10 0.67 7.89 -51.93 -0.41 0.26 16 37 H 0.10 0.63 8.08 -51.93 -0.42 0.22 16 38 H 0.13 0.90 8.06 -52.48 -0.42 0.48 16 39 H 0.13 0.59 6.41 -52.48 -0.34 0.25 16 40 H 0.40 1.28 6.86 -40.82 -0.28 1.00 16 41 H 0.40 1.88 8.93 -40.82 -0.36 1.51 16 42 H 0.14 1.44 7.65 -52.49 -0.40 1.03 16 43 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 44 H 0.08 1.30 7.75 -51.93 -0.40 0.89 16 45 H 0.08 1.58 7.88 -51.93 -0.41 1.17 16 46 H 0.03 0.49 6.49 -51.92 -0.34 0.16 16 47 H 0.02 0.41 6.93 -51.93 -0.36 0.05 16 48 H 0.38 10.15 7.61 -40.82 -0.31 9.84 16 49 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 399.86 15.07 6.03 6.03 Total: -1.00 -37.23 399.86 -9.41 -46.65 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: -7.18 Total: 8.62 kcal Atomic # 6 Polarization: 1.59 SS G_CDS: -3.52 Total: -1.93 kcal Atomic # 7 Polarization: -59.66 SS G_CDS: 0.10 Total: -59.55 kcal Atomic # 8 Polarization: -17.35 SS G_CDS: 0.18 Total: -17.17 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -37.23 -9.41 -46.65 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672338786.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.082 kcal (2) G-P(sol) polarization free energy of solvation -37.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds