Wall clock time and date at job start Wed Apr 1 2020 02:55:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 110.38729 * 2 1 4 4 C 1.54384 * 110.34283 * 122.23054 * 2 1 3 5 5 N 1.48143 * 104.62065 * 142.73967 * 4 2 1 6 6 C 1.34769 * 127.84170 * 140.39360 * 5 4 2 7 7 O 1.21281 * 120.00155 * 179.97438 * 6 5 4 8 8 C 1.50701 * 119.99961 * 359.97438 * 6 5 4 9 9 C 1.50705 * 109.47323 * 180.02562 * 8 6 5 10 10 C 1.38360 * 119.84646 * 269.72815 * 9 8 6 11 11 C 1.37963 * 120.13971 * 179.72281 * 10 9 8 12 12 C 1.39574 * 119.85305 * 0.54528 * 11 10 9 13 13 C 1.47849 * 120.14224 * 179.70428 * 12 11 10 14 14 N 1.34776 * 120.00142 * 0.02562 * 13 12 11 15 15 O 1.21552 * 119.99692 * 180.02562 * 13 12 11 16 16 C 1.39574 * 119.71086 * 359.72614 * 12 11 10 17 17 C 1.37952 * 119.85441 * 0.02562 * 16 12 11 18 18 C 1.48151 * 104.32040 * 320.41512 * 5 4 2 19 19 C 1.54281 * 110.34372 * 237.76803 * 2 1 3 20 20 H 1.09005 * 110.34282 * 122.14983 * 19 2 1 21 21 C 1.53004 * 110.34432 * 359.97438 * 19 2 1 22 22 N 1.46499 * 109.47198 * 175.00023 * 21 19 2 23 23 C 1.36939 * 119.99933 * 180.27608 * 22 21 19 24 24 H 1.08001 * 119.99700 * 359.72658 * 23 22 21 25 25 C 1.38810 * 120.00095 * 179.71972 * 23 22 21 26 26 N 1.31624 * 119.99740 * 0.02562 * 25 23 22 27 27 Si 1.86796 * 120.00044 * 179.97438 * 25 23 22 28 28 H 1.48501 * 109.47173 * 60.00435 * 27 25 23 29 29 H 1.48497 * 109.47172 * 180.02562 * 27 25 23 30 30 H 1.48506 * 109.47132 * 300.00314 * 27 25 23 31 31 H 1.09002 * 109.46810 * 182.22987 * 1 2 3 32 32 H 1.09001 * 109.46892 * 302.23152 * 1 2 3 33 33 H 1.09001 * 109.47136 * 62.23259 * 1 2 3 34 34 H 1.09008 * 110.40676 * 261.52406 * 4 2 1 35 35 H 1.09001 * 110.40797 * 23.95001 * 4 2 1 36 36 H 1.08999 * 109.47109 * 300.00038 * 8 6 5 37 37 H 1.08993 * 109.47271 * 59.99929 * 8 6 5 38 38 H 1.08005 * 119.93240 * 359.97438 * 10 9 8 39 39 H 1.08005 * 120.07141 * 180.24778 * 11 10 9 40 40 H 0.97008 * 119.99742 * 0.02562 * 14 13 12 41 41 H 0.96996 * 120.00199 * 179.97438 * 14 13 12 42 42 H 1.07997 * 120.07288 * 179.97438 * 16 12 11 43 43 H 1.08002 * 119.93048 * 179.97438 * 17 16 12 44 44 H 1.08998 * 110.40618 * 280.80042 * 18 5 4 45 45 H 1.08998 * 110.40357 * 158.37108 * 18 5 4 46 46 H 1.09009 * 109.46730 * 54.99810 * 21 19 2 47 47 H 1.08998 * 109.46846 * 295.00355 * 21 19 2 48 48 H 0.97001 * 119.99790 * 359.97438 * 22 21 19 49 49 H 0.96998 * 119.99409 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9098 1.0218 0.0000 4 6 2.0667 -0.7720 1.2245 5 7 3.2665 -1.4816 0.7227 6 6 4.4425 -1.6660 1.3545 7 8 5.3366 -2.2748 0.8060 8 6 4.6467 -1.1157 2.7425 9 6 6.0356 -1.4557 3.2185 10 6 6.2578 -2.6343 3.9082 11 6 7.5279 -2.9543 4.3417 12 6 8.5876 -2.0807 4.0931 13 6 9.9500 -2.4141 4.5606 14 7 10.1709 -3.5641 5.2279 15 8 10.8709 -1.6511 4.3430 16 6 8.3554 -0.8906 3.4017 17 6 7.0816 -0.5850 2.9692 18 6 2.8802 -1.9422 -0.6314 19 6 2.0664 -0.7715 -1.2237 20 1 2.7081 -0.1282 -1.8258 21 6 0.9062 -1.3041 -2.0671 22 7 1.4329 -1.9285 -3.2832 23 6 0.5742 -2.4744 -4.1996 24 1 -0.4911 -2.4486 -4.0236 25 6 1.0729 -3.0610 -5.3546 26 7 2.3712 -3.0928 -5.5688 27 14 -0.0985 -3.8063 -6.6043 28 1 -1.0217 -2.7564 -7.1050 29 1 0.6788 -4.3649 -7.7396 30 1 -0.8837 -4.8905 -5.9616 31 1 -0.3633 -1.0269 0.0400 32 1 -0.3633 0.5481 0.8693 33 1 -0.3633 0.4788 -0.9093 34 1 2.3401 -0.0794 2.0206 35 1 1.3235 -1.4860 1.5793 36 1 4.5237 -0.0328 2.7257 37 1 3.9130 -1.5541 3.4187 38 1 5.4361 -3.3073 4.1041 39 1 7.7008 -3.8766 4.8765 40 1 9.4360 -4.1731 5.4011 41 1 11.0648 -3.7830 5.5342 42 1 9.1710 -0.2102 3.2065 43 1 6.9004 0.3356 2.4344 44 1 2.2640 -2.8389 -0.5664 45 1 3.7673 -2.1324 -1.2354 46 1 0.2461 -0.4801 -2.3383 47 1 0.3480 -2.0427 -1.4918 48 1 2.3897 -1.9514 -3.4413 49 1 2.7196 -3.5030 -6.3757 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672338786.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:03 Heat of formation + Delta-G solvation = -63.244870 kcal Electronic energy + Delta-G solvation = -29210.508213 eV Core-core repulsion = 25136.230408 eV Total energy + Delta-G solvation = -4074.277805 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.45985 -40.95802 -39.67526 -38.77461 -36.38527 -35.02921 -34.36608 -33.63442 -32.81537 -31.89157 -30.75058 -29.16391 -27.35196 -26.67931 -25.00662 -24.02304 -23.67651 -23.37211 -21.49587 -20.28945 -20.16157 -19.20894 -18.93895 -18.16330 -17.91740 -17.13470 -16.88547 -16.60766 -16.25054 -16.09268 -15.93092 -15.84665 -15.71106 -15.29003 -15.19918 -14.78570 -14.60576 -14.39653 -14.25530 -13.80940 -13.53648 -13.37235 -13.13484 -13.03635 -12.88745 -12.83358 -12.73948 -12.70198 -12.64349 -12.21224 -11.99772 -11.81909 -11.65306 -11.48267 -11.26085 -11.23772 -10.98054 -10.86252 -10.78097 -9.95911 -9.79008 -9.75519 -8.97694 -7.94064 -5.23161 -0.23070 0.41193 1.46602 1.50120 1.56282 1.62731 1.69379 2.05127 2.50586 2.56507 2.85399 3.39050 3.48153 3.59399 3.64228 3.77747 3.86706 3.89568 3.95326 4.01464 4.20461 4.28708 4.28919 4.37721 4.47160 4.53831 4.57840 4.63211 4.64282 4.71182 4.82848 4.84807 4.89579 4.95494 5.00317 5.02504 5.21658 5.24534 5.25943 5.30069 5.33721 5.46853 5.51402 5.52265 5.61358 5.81142 5.89909 6.27706 6.36556 6.62114 7.15570 7.23499 7.33205 8.11074 8.31872 9.29516 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.015098 B = 0.001959 C = 0.001799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.148409 B =14292.458639 C =15562.513999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.090 4.090 3 H 0.095 0.905 4 C 0.104 3.896 5 N -0.623 5.623 6 C 0.526 3.474 7 O -0.590 6.590 8 C -0.090 4.090 9 C -0.046 4.046 10 C -0.120 4.120 11 C -0.078 4.078 12 C -0.160 4.160 13 C 0.561 3.439 14 N -0.828 5.828 15 O -0.592 6.592 16 C -0.077 4.077 17 C -0.123 4.123 18 C 0.120 3.880 19 C -0.099 4.099 20 H 0.060 0.940 21 C 0.164 3.836 22 N -0.750 5.750 23 C -0.241 4.241 24 H 0.080 0.920 25 C -0.082 4.082 26 N -0.973 5.973 27 Si 0.975 3.025 28 H -0.275 1.275 29 H -0.299 1.299 30 H -0.276 1.276 31 H 0.056 0.944 32 H 0.084 0.916 33 H 0.053 0.947 34 H 0.121 0.879 35 H 0.090 0.910 36 H 0.134 0.866 37 H 0.141 0.859 38 H 0.152 0.848 39 H 0.162 0.838 40 H 0.417 0.583 41 H 0.413 0.587 42 H 0.125 0.875 43 H 0.137 0.863 44 H 0.063 0.937 45 H 0.040 0.960 46 H 0.034 0.966 47 H 0.030 0.970 48 H 0.369 0.631 49 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.430 4.616 30.004 30.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.109 4.109 3 H 0.113 0.887 4 C -0.017 4.017 5 N -0.356 5.356 6 C 0.317 3.683 7 O -0.470 6.470 8 C -0.129 4.129 9 C -0.047 4.047 10 C -0.138 4.138 11 C -0.096 4.096 12 C -0.163 4.163 13 C 0.348 3.652 14 N -0.393 5.393 15 O -0.474 6.474 16 C -0.096 4.096 17 C -0.141 4.141 18 C -0.003 4.003 19 C -0.119 4.119 20 H 0.079 0.921 21 C 0.038 3.962 22 N -0.393 5.393 23 C -0.373 4.373 24 H 0.098 0.902 25 C -0.274 4.274 26 N -0.624 5.624 27 Si 0.804 3.196 28 H -0.201 1.201 29 H -0.226 1.226 30 H -0.202 1.202 31 H 0.075 0.925 32 H 0.103 0.897 33 H 0.072 0.928 34 H 0.139 0.861 35 H 0.108 0.892 36 H 0.152 0.848 37 H 0.159 0.841 38 H 0.169 0.831 39 H 0.179 0.821 40 H 0.250 0.750 41 H 0.245 0.755 42 H 0.143 0.857 43 H 0.155 0.845 44 H 0.082 0.918 45 H 0.059 0.941 46 H 0.052 0.948 47 H 0.048 0.952 48 H 0.200 0.800 49 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 3.276 4.792 29.534 30.100 hybrid contribution 0.380 -0.993 -1.555 1.883 sum 3.656 3.799 27.980 28.472 Atomic orbital electron populations 1.21874 0.92864 1.02539 1.02804 1.22078 0.97298 0.99481 0.92085 0.88662 1.22839 0.85660 0.96173 0.97035 1.49158 1.13879 1.55595 1.16929 1.20938 0.79704 0.79202 0.88495 1.90753 1.42943 1.44113 1.69162 1.20791 0.95442 1.05138 0.91529 1.19818 0.94838 0.94661 0.95393 1.21313 0.98033 0.96268 0.98152 1.21557 0.91513 0.98802 0.97762 1.19965 0.93351 0.98036 1.04982 1.18504 0.88173 0.81573 0.76985 1.43565 1.15809 1.21529 1.58352 1.90787 1.46214 1.51412 1.58982 1.21297 0.97367 0.95876 0.95088 1.21180 0.92047 1.00965 0.99954 1.22106 0.97663 0.97121 0.83406 1.22192 0.96594 0.96097 0.96999 0.92112 1.21034 0.94235 0.94904 0.86070 1.42709 1.05905 1.69423 1.21215 1.19625 0.90662 1.28384 0.98622 0.90184 1.25635 0.97374 1.03339 1.01021 1.69840 1.12588 1.51737 1.28259 0.85186 0.77726 0.78428 0.78276 1.20128 1.22581 1.20226 0.92534 0.89721 0.92798 0.86135 0.89179 0.84766 0.84072 0.83077 0.82089 0.75015 0.75467 0.85747 0.84476 0.91834 0.94081 0.94772 0.95217 0.79960 0.94184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 7.94 71.98 0.57 -1.79 16 2 C -0.09 -1.66 3.66 -9.89 -0.04 -1.70 16 3 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 4 C 0.10 1.49 6.46 86.53 0.56 2.05 16 5 N -0.62 -14.98 3.32 -807.97 -2.68 -17.66 16 6 C 0.53 13.29 7.91 87.66 0.69 13.99 16 7 O -0.59 -21.77 16.30 -3.03 -0.05 -21.82 16 8 C -0.09 -1.21 4.80 29.10 0.14 -1.07 16 9 C -0.05 -0.82 4.38 -19.81 -0.09 -0.90 16 10 C -0.12 -1.82 9.68 22.23 0.22 -1.61 16 11 C -0.08 -1.11 9.54 22.53 0.21 -0.90 16 12 C -0.16 -3.20 5.87 -20.09 -0.12 -3.32 16 13 C 0.56 11.73 8.05 86.79 0.70 12.43 16 14 N -0.83 -8.74 8.82 -175.60 -1.55 -10.29 16 15 O -0.59 -17.76 17.18 -3.88 -0.07 -17.83 16 16 C -0.08 -1.73 9.60 22.52 0.22 -1.51 16 17 C -0.12 -2.46 9.68 22.23 0.22 -2.24 16 18 C 0.12 3.96 6.41 86.53 0.55 4.51 16 19 C -0.10 -2.99 3.10 -9.89 -0.03 -3.02 16 20 H 0.06 2.07 8.14 -2.38 -0.02 2.05 16 21 C 0.16 6.08 4.40 86.38 0.38 6.46 16 22 N -0.75 -38.11 5.48 -343.44 -1.88 -39.99 16 23 C -0.24 -13.44 9.99 84.03 0.84 -12.60 16 24 H 0.08 4.20 7.83 -2.91 -0.02 4.17 16 25 C -0.08 -4.78 5.50 84.86 0.47 -4.31 16 26 N -0.97 -61.37 13.06 21.65 0.28 -61.09 16 27 Si 0.98 46.56 29.55 68.60 2.03 48.59 16 28 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 29 H -0.30 -14.57 7.11 99.48 0.71 -13.86 16 30 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 31 H 0.06 1.03 6.90 -2.39 -0.02 1.01 16 32 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.05 1.06 6.67 -2.39 -0.02 1.04 16 34 H 0.12 0.75 7.30 -2.38 -0.02 0.73 16 35 H 0.09 1.10 7.83 -2.39 -0.02 1.08 16 36 H 0.13 1.05 7.89 -2.39 -0.02 1.04 16 37 H 0.14 0.91 8.08 -2.39 -0.02 0.89 16 38 H 0.15 1.54 8.06 -2.91 -0.02 1.52 16 39 H 0.16 0.95 6.41 -2.91 -0.02 0.93 16 40 H 0.42 1.61 6.86 -92.70 -0.64 0.97 16 41 H 0.41 3.31 8.93 -92.71 -0.83 2.48 16 42 H 0.12 2.92 7.65 -2.91 -0.02 2.90 16 43 H 0.14 2.33 8.06 -2.91 -0.02 2.31 16 44 H 0.06 2.22 7.75 -2.39 -0.02 2.20 16 45 H 0.04 1.68 7.88 -2.39 -0.02 1.66 16 46 H 0.03 1.25 6.49 -2.38 -0.02 1.23 16 47 H 0.03 1.08 6.93 -2.39 -0.02 1.07 16 48 H 0.37 20.58 7.61 -92.71 -0.71 19.87 16 49 H 0.25 15.34 8.31 -92.71 -0.77 14.57 16 Total: -1.00 -87.53 399.86 0.41 -87.12 By element: Atomic # 1 Polarization: 29.65 SS G_CDS: -1.16 Total: 28.49 kcal Atomic # 6 Polarization: -1.01 SS G_CDS: 5.49 Total: 4.48 kcal Atomic # 7 Polarization: -123.20 SS G_CDS: -5.83 Total: -129.03 kcal Atomic # 8 Polarization: -39.53 SS G_CDS: -0.12 Total: -39.65 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 2.03 Total: 48.59 kcal Total: -87.53 0.41 -87.12 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672338786.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.874 kcal (2) G-P(sol) polarization free energy of solvation -87.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds