Wall clock time and date at job start Wed Apr 1 2020 03:27:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09010 * 109.46792 * 2 1 4 4 N 1.46496 * 109.47000 * 119.99895 * 2 1 3 5 5 C 1.36936 * 120.00445 * 274.99686 * 4 2 1 6 6 H 1.08001 * 119.99600 * 0.02562 * 5 4 2 7 7 C 1.38813 * 120.00115 * 180.02562 * 5 4 2 8 8 N 1.31613 * 120.00130 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99748 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.47133 * 60.00473 * 9 7 5 11 11 H 1.48505 * 109.47091 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.47521 * 300.00241 * 9 7 5 13 13 C 1.50697 * 109.46852 * 240.00553 * 2 1 3 14 14 C 1.38232 * 120.00310 * 100.00065 * 13 2 1 15 15 C 1.38240 * 120.00061 * 179.97438 * 14 13 2 16 16 C 1.38233 * 119.99761 * 359.97438 * 15 14 13 17 17 C 1.50703 * 119.99932 * 180.02562 * 16 15 14 18 18 N 1.46502 * 109.47135 * 90.00425 * 17 16 15 19 19 C 1.34778 * 120.00220 * 180.02562 * 18 17 16 20 20 O 1.21279 * 119.99485 * 359.97438 * 19 18 17 21 21 C 1.50696 * 120.00042 * 179.97438 * 19 18 17 22 22 H 1.09002 * 109.67213 * 59.99845 * 21 19 18 23 23 C 1.53343 * 109.67336 * 180.49795 * 21 19 18 24 24 C 1.52914 * 108.67581 * 187.30181 * 23 21 19 25 25 N 1.45758 * 110.48916 * 309.24217 * 24 23 21 26 26 C 1.33351 * 124.10235 * 19.05768 * 25 24 23 27 27 O 1.21278 * 118.24770 * 177.82433 * 26 25 24 28 28 C 1.50181 * 123.51026 * 357.81557 * 26 25 24 29 29 C 1.38238 * 120.00200 * 0.27837 * 16 15 14 30 30 C 1.38234 * 119.99928 * 359.50943 * 29 16 15 31 31 H 1.09000 * 109.46875 * 299.99913 * 1 2 3 32 32 H 1.09001 * 109.46973 * 59.99843 * 1 2 3 33 33 H 1.08993 * 109.46973 * 179.97438 * 1 2 3 34 34 H 0.97005 * 119.99268 * 95.00369 * 4 2 1 35 35 H 0.96997 * 120.00019 * 179.97438 * 8 7 5 36 36 H 1.07998 * 119.99966 * 359.97438 * 14 13 2 37 37 H 1.08000 * 120.00197 * 179.97438 * 15 14 13 38 38 H 1.09001 * 109.47151 * 330.00499 * 17 16 15 39 39 H 1.08997 * 109.47270 * 210.00186 * 17 16 15 40 40 H 0.97001 * 119.99708 * 359.97438 * 18 17 16 41 41 H 1.09009 * 109.60086 * 307.05350 * 23 21 19 42 42 H 1.08996 * 109.60675 * 67.54060 * 23 21 19 43 43 H 1.08998 * 109.30752 * 69.55627 * 24 23 21 44 44 H 1.09004 * 109.30470 * 188.93368 * 24 23 21 45 45 H 0.96992 * 117.95288 * 199.06882 * 25 24 23 46 46 H 1.09003 * 109.38643 * 257.42773 * 28 26 25 47 47 H 1.09002 * 109.41266 * 137.69036 * 28 26 25 48 48 H 1.07993 * 119.99851 * 179.72980 * 29 16 15 49 49 H 1.07994 * 120.00096 * 180.27532 * 30 29 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1492 -0.0075 2.3757 6 1 1.8920 1.0403 2.4243 7 6 2.6124 -0.6618 3.5090 8 7 2.9262 -1.9386 3.4496 9 14 2.7902 0.2699 5.1182 10 1 1.4674 0.8057 5.5288 11 1 3.2992 -0.6485 6.1683 12 1 3.7445 1.3931 4.9372 13 6 2.0323 -0.7103 -1.2305 14 6 2.4586 0.0196 -2.3243 15 6 2.9199 -0.6320 -3.4529 16 6 2.9552 -2.0135 -3.4874 17 6 3.4585 -2.7239 -4.7175 18 7 4.9038 -2.9342 -4.6029 19 6 5.5751 -3.5548 -5.5932 20 8 4.9826 -3.9396 -6.5789 21 6 7.0619 -3.7707 -5.4755 22 1 7.2762 -4.3767 -4.5952 23 6 7.5813 -4.4819 -6.7308 24 6 9.0486 -4.8524 -6.5120 25 7 9.8050 -3.6929 -6.0560 26 6 9.2533 -2.6049 -5.5173 27 8 9.9872 -1.7173 -5.1373 28 6 7.7717 -2.4197 -5.3563 29 6 2.5239 -2.7435 -2.3955 30 6 2.0668 -2.0918 -1.2654 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 2.2490 -1.6318 1.1525 35 1 3.2503 -2.3957 4.2414 36 1 2.4314 1.0989 -2.2971 37 1 3.2526 -0.0618 -4.3076 38 1 3.2483 -2.1177 -5.5987 39 1 2.9575 -3.6873 -4.8112 40 1 5.3777 -2.6261 -3.8146 41 1 6.9981 -5.3860 -6.9066 42 1 7.4963 -3.8163 -7.5898 43 1 9.1132 -5.6418 -5.7632 44 1 9.4728 -5.2133 -7.4490 45 1 10.7701 -3.7138 -6.1504 46 1 7.4045 -1.7481 -6.1324 47 1 7.5649 -1.9871 -4.3774 48 1 2.5474 -3.8227 -2.4242 49 1 1.7340 -2.6620 -0.4107 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001672937546.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:27:06 Heat of formation + Delta-G solvation = -49.730203 kcal Electronic energy + Delta-G solvation = -29145.301742 eV Core-core repulsion = 25071.609977 eV Total energy + Delta-G solvation = -4073.691765 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.05020 -39.83303 -39.17193 -36.74382 -35.99539 -34.63408 -33.65287 -32.33468 -30.76913 -30.44723 -29.97109 -28.38454 -26.59845 -25.23598 -23.96649 -23.38417 -22.60086 -21.64875 -20.73080 -19.76688 -19.64827 -18.05056 -17.50597 -17.31754 -16.80881 -16.20365 -15.84725 -15.70553 -15.42702 -15.03882 -14.82084 -14.69291 -14.40947 -14.06235 -13.93621 -13.83921 -13.50841 -13.37502 -13.13918 -12.94525 -12.53053 -12.34234 -12.28156 -12.18967 -11.98491 -11.72936 -11.57554 -11.53549 -11.19109 -10.94861 -10.84693 -10.64777 -10.63142 -10.34176 -10.05083 -9.92300 -9.70517 -9.53848 -9.32698 -9.00299 -8.68644 -8.36480 -7.03229 -5.81675 -3.10488 1.41619 1.64353 2.22673 2.30877 2.83679 2.95918 3.41467 3.46107 3.46748 3.95757 4.03281 4.13544 4.21512 4.26170 4.55560 4.61330 4.73702 4.74662 4.81619 4.93566 5.04099 5.16379 5.17369 5.26292 5.28187 5.35122 5.43426 5.52580 5.54647 5.63925 5.68593 5.74370 5.92183 5.98797 6.13407 6.21099 6.27747 6.31717 6.31911 6.46955 6.58533 6.67734 6.72938 6.86773 6.91951 7.12471 7.20835 7.24779 7.65372 7.79334 7.90269 8.36696 9.48098 10.03247 10.38524 11.40910 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011672 B = 0.002138 C = 0.001926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2398.226827 B =13093.899421 C =14537.355815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.203 3.797 3 H 0.056 0.944 4 N -0.721 5.721 5 C -0.241 4.241 6 H 0.071 0.929 7 C -0.012 4.012 8 N -0.933 5.933 9 Si 0.908 3.092 10 H -0.286 1.286 11 H -0.291 1.291 12 H -0.286 1.286 13 C -0.052 4.052 14 C -0.121 4.121 15 C -0.102 4.102 16 C -0.133 4.133 17 C 0.167 3.833 18 N -0.721 5.721 19 C 0.519 3.481 20 O -0.539 6.539 21 C -0.113 4.113 22 H 0.108 0.892 23 C -0.117 4.117 24 C 0.109 3.891 25 N -0.722 5.722 26 C 0.524 3.476 27 O -0.552 6.552 28 C -0.128 4.128 29 C -0.099 4.099 30 C -0.106 4.106 31 H 0.057 0.943 32 H 0.038 0.962 33 H 0.048 0.952 34 H 0.385 0.615 35 H 0.256 0.744 36 H 0.121 0.879 37 H 0.117 0.883 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.405 0.595 41 H 0.096 0.904 42 H 0.080 0.920 43 H 0.070 0.930 44 H 0.082 0.918 45 H 0.401 0.599 46 H 0.107 0.893 47 H 0.109 0.891 48 H 0.118 0.882 49 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.404 -6.212 -22.663 24.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.093 3.907 3 H 0.074 0.926 4 N -0.363 5.363 5 C -0.372 4.372 6 H 0.089 0.911 7 C -0.208 4.208 8 N -0.581 5.581 9 Si 0.739 3.261 10 H -0.212 1.212 11 H -0.217 1.217 12 H -0.212 1.212 13 C -0.053 4.053 14 C -0.140 4.140 15 C -0.120 4.120 16 C -0.133 4.133 17 C 0.044 3.956 18 N -0.373 5.373 19 C 0.305 3.695 20 O -0.416 6.416 21 C -0.134 4.134 22 H 0.126 0.874 23 C -0.155 4.155 24 C -0.016 4.016 25 N -0.374 5.374 26 C 0.311 3.689 27 O -0.430 6.430 28 C -0.168 4.168 29 C -0.117 4.117 30 C -0.124 4.124 31 H 0.076 0.924 32 H 0.057 0.943 33 H 0.067 0.933 34 H 0.220 0.780 35 H 0.066 0.934 36 H 0.139 0.861 37 H 0.135 0.865 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.240 0.760 41 H 0.115 0.885 42 H 0.099 0.901 43 H 0.088 0.912 44 H 0.101 0.899 45 H 0.236 0.764 46 H 0.125 0.875 47 H 0.128 0.872 48 H 0.136 0.864 49 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 7.100 -5.914 -22.991 24.778 hybrid contribution 0.671 0.185 1.378 1.543 sum 7.771 -5.730 -21.613 23.671 Atomic orbital electron populations 1.22422 0.98221 1.01166 1.00176 1.19258 0.92167 0.95023 0.84210 0.92603 1.42508 1.78238 1.10687 1.04903 1.19195 1.36825 0.93994 0.87148 0.91120 1.24735 1.01958 0.96004 0.98101 1.69640 1.50641 1.08695 1.29097 0.86262 0.77811 0.78628 0.83446 1.21237 1.21680 1.21225 1.20542 0.95115 0.94061 0.95605 1.21026 0.99962 0.99845 0.93136 1.20923 0.99590 0.93481 0.98043 1.19635 1.04178 0.93854 0.95659 1.20157 0.79708 1.00049 0.95645 1.46209 1.09269 1.59714 1.22063 1.20370 0.88911 0.77476 0.82759 1.90715 1.69952 1.50286 1.30682 1.21480 0.92210 0.98004 1.01756 0.87383 1.21724 0.94171 1.02689 0.96912 1.21457 0.92058 0.87601 1.00440 1.45498 1.11307 1.17536 1.63071 1.19970 0.90999 0.81475 0.76499 1.90804 1.62073 1.40693 1.49424 1.21669 0.91274 0.97526 1.06298 1.21010 0.98426 0.99452 0.92856 1.21092 0.99130 0.94439 0.97737 0.92365 0.94312 0.93319 0.78013 0.93402 0.86098 0.86473 0.90821 0.90754 0.76021 0.88506 0.90121 0.91193 0.89939 0.76387 0.87525 0.87239 0.86351 0.85372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.82 9.47 37.16 0.35 -2.46 16 2 C 0.20 3.93 3.09 -69.09 -0.21 3.72 16 3 H 0.06 1.09 7.94 -51.92 -0.41 0.68 16 4 N -0.72 -17.49 5.07 -54.55 -0.28 -17.76 16 5 C -0.24 -6.51 9.93 -15.06 -0.15 -6.66 16 6 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 7 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 8 N -0.93 -27.54 13.06 55.49 0.72 -26.82 16 9 Si 0.91 22.05 29.55 -169.99 -5.02 17.03 16 10 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 12 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 13 C -0.05 -0.86 4.95 -104.62 -0.52 -1.38 16 14 C -0.12 -1.70 9.67 -39.58 -0.38 -2.09 16 15 C -0.10 -1.22 9.70 -39.58 -0.38 -1.61 16 16 C -0.13 -1.54 5.25 -104.62 -0.55 -2.09 16 17 C 0.17 1.67 5.80 -5.19 -0.03 1.64 16 18 N -0.72 -6.38 5.46 -61.47 -0.34 -6.72 16 19 C 0.52 4.77 7.13 -10.99 -0.08 4.70 16 20 O -0.54 -6.75 15.90 5.56 0.09 -6.66 16 21 C -0.11 -0.73 2.60 -91.56 -0.24 -0.97 16 22 H 0.11 0.57 8.13 -51.93 -0.42 0.15 16 23 C -0.12 -0.63 4.71 -26.60 -0.13 -0.76 16 24 C 0.11 0.41 7.17 -4.49 -0.03 0.38 16 25 N -0.72 -4.48 5.45 -61.39 -0.33 -4.81 16 26 C 0.52 4.84 7.71 -11.87 -0.09 4.75 16 27 O -0.55 -7.64 17.78 5.56 0.10 -7.54 16 28 C -0.13 -0.92 5.20 -28.10 -0.15 -1.07 16 29 C -0.10 -1.30 9.70 -39.58 -0.38 -1.69 16 30 C -0.11 -1.69 9.06 -39.58 -0.36 -2.05 16 31 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.38 9.80 6.07 -40.82 -0.25 9.56 16 35 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 36 H 0.12 1.53 8.04 -52.49 -0.42 1.10 16 37 H 0.12 1.16 8.06 -52.49 -0.42 0.73 16 38 H 0.07 0.74 8.09 -51.93 -0.42 0.32 16 39 H 0.07 0.77 8.08 -51.93 -0.42 0.35 16 40 H 0.40 3.20 8.19 -40.82 -0.33 2.87 16 41 H 0.10 0.54 7.89 -51.92 -0.41 0.13 16 42 H 0.08 0.50 8.12 -51.93 -0.42 0.08 16 43 H 0.07 0.21 8.14 -51.93 -0.42 -0.22 16 44 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 45 H 0.40 2.16 8.80 -40.82 -0.36 1.80 16 46 H 0.11 0.75 8.09 -51.93 -0.42 0.33 16 47 H 0.11 0.76 7.95 -51.93 -0.41 0.35 16 48 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 49 H 0.13 2.23 6.92 -52.49 -0.36 1.87 16 LS Contribution 405.51 15.07 6.11 6.11 Total: -1.00 -34.41 405.51 -9.94 -44.36 By element: Atomic # 1 Polarization: 18.46 SS G_CDS: -7.57 Total: 10.89 kcal Atomic # 6 Polarization: -4.64 SS G_CDS: -3.43 Total: -8.07 kcal Atomic # 7 Polarization: -55.89 SS G_CDS: -0.22 Total: -56.11 kcal Atomic # 8 Polarization: -14.39 SS G_CDS: 0.19 Total: -14.20 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -34.41 -9.94 -44.36 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672937546.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.373 kcal (2) G-P(sol) polarization free energy of solvation -34.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds