Wall clock time and date at job start Wed Apr 1 2020 03:27:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09010 * 109.46792 * 2 1 4 4 N 1.46496 * 109.47000 * 119.99895 * 2 1 3 5 5 C 1.36936 * 120.00445 * 274.99686 * 4 2 1 6 6 H 1.08001 * 119.99600 * 0.02562 * 5 4 2 7 7 C 1.38813 * 120.00115 * 180.02562 * 5 4 2 8 8 N 1.31613 * 120.00130 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99748 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.47133 * 60.00473 * 9 7 5 11 11 H 1.48505 * 109.47091 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.47521 * 300.00241 * 9 7 5 13 13 C 1.50697 * 109.46852 * 240.00553 * 2 1 3 14 14 C 1.38232 * 120.00310 * 100.00065 * 13 2 1 15 15 C 1.38240 * 120.00061 * 179.97438 * 14 13 2 16 16 C 1.38233 * 119.99761 * 359.97438 * 15 14 13 17 17 C 1.50703 * 119.99932 * 180.02562 * 16 15 14 18 18 N 1.46502 * 109.47135 * 90.00425 * 17 16 15 19 19 C 1.34778 * 120.00220 * 180.02562 * 18 17 16 20 20 O 1.21279 * 119.99485 * 359.97438 * 19 18 17 21 21 C 1.50696 * 120.00042 * 179.97438 * 19 18 17 22 22 H 1.09002 * 109.67213 * 59.99845 * 21 19 18 23 23 C 1.53343 * 109.67336 * 180.49795 * 21 19 18 24 24 C 1.52914 * 108.67581 * 187.30181 * 23 21 19 25 25 N 1.45758 * 110.48916 * 309.24217 * 24 23 21 26 26 C 1.33351 * 124.10235 * 19.05768 * 25 24 23 27 27 O 1.21278 * 118.24770 * 177.82433 * 26 25 24 28 28 C 1.50181 * 123.51026 * 357.81557 * 26 25 24 29 29 C 1.38238 * 120.00200 * 0.27837 * 16 15 14 30 30 C 1.38234 * 119.99928 * 359.50943 * 29 16 15 31 31 H 1.09000 * 109.46875 * 299.99913 * 1 2 3 32 32 H 1.09001 * 109.46973 * 59.99843 * 1 2 3 33 33 H 1.08993 * 109.46973 * 179.97438 * 1 2 3 34 34 H 0.97005 * 119.99268 * 95.00369 * 4 2 1 35 35 H 0.96997 * 120.00019 * 179.97438 * 8 7 5 36 36 H 1.07998 * 119.99966 * 359.97438 * 14 13 2 37 37 H 1.08000 * 120.00197 * 179.97438 * 15 14 13 38 38 H 1.09001 * 109.47151 * 330.00499 * 17 16 15 39 39 H 1.08997 * 109.47270 * 210.00186 * 17 16 15 40 40 H 0.97001 * 119.99708 * 359.97438 * 18 17 16 41 41 H 1.09009 * 109.60086 * 307.05350 * 23 21 19 42 42 H 1.08996 * 109.60675 * 67.54060 * 23 21 19 43 43 H 1.08998 * 109.30752 * 69.55627 * 24 23 21 44 44 H 1.09004 * 109.30470 * 188.93368 * 24 23 21 45 45 H 0.96992 * 117.95288 * 199.06882 * 25 24 23 46 46 H 1.09003 * 109.38643 * 257.42773 * 28 26 25 47 47 H 1.09002 * 109.41266 * 137.69036 * 28 26 25 48 48 H 1.07993 * 119.99851 * 179.72980 * 29 16 15 49 49 H 1.07994 * 120.00096 * 180.27532 * 30 29 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1492 -0.0075 2.3757 6 1 1.8920 1.0403 2.4243 7 6 2.6124 -0.6618 3.5090 8 7 2.9262 -1.9386 3.4496 9 14 2.7902 0.2699 5.1182 10 1 1.4674 0.8057 5.5288 11 1 3.2992 -0.6485 6.1683 12 1 3.7445 1.3931 4.9372 13 6 2.0323 -0.7103 -1.2305 14 6 2.4586 0.0196 -2.3243 15 6 2.9199 -0.6320 -3.4529 16 6 2.9552 -2.0135 -3.4874 17 6 3.4585 -2.7239 -4.7175 18 7 4.9038 -2.9342 -4.6029 19 6 5.5751 -3.5548 -5.5932 20 8 4.9826 -3.9396 -6.5789 21 6 7.0619 -3.7707 -5.4755 22 1 7.2762 -4.3767 -4.5952 23 6 7.5813 -4.4819 -6.7308 24 6 9.0486 -4.8524 -6.5120 25 7 9.8050 -3.6929 -6.0560 26 6 9.2533 -2.6049 -5.5173 27 8 9.9872 -1.7173 -5.1373 28 6 7.7717 -2.4197 -5.3563 29 6 2.5239 -2.7435 -2.3955 30 6 2.0668 -2.0918 -1.2654 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 2.2490 -1.6318 1.1525 35 1 3.2503 -2.3957 4.2414 36 1 2.4314 1.0989 -2.2971 37 1 3.2526 -0.0618 -4.3076 38 1 3.2483 -2.1177 -5.5987 39 1 2.9575 -3.6873 -4.8112 40 1 5.3777 -2.6261 -3.8146 41 1 6.9981 -5.3860 -6.9066 42 1 7.4963 -3.8163 -7.5898 43 1 9.1132 -5.6418 -5.7632 44 1 9.4728 -5.2133 -7.4490 45 1 10.7701 -3.7138 -6.1504 46 1 7.4045 -1.7481 -6.1324 47 1 7.5649 -1.9871 -4.3774 48 1 2.5474 -3.8227 -2.4242 49 1 1.7340 -2.6620 -0.4107 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672937546.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:27:04 Heat of formation + Delta-G solvation = -73.841323 kcal Electronic energy + Delta-G solvation = -29146.347278 eV Core-core repulsion = 25071.609977 eV Total energy + Delta-G solvation = -4074.737302 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.71278 -40.74326 -40.15576 -37.57018 -37.21894 -35.75346 -34.37603 -33.94692 -31.92039 -31.63474 -30.63116 -30.00474 -27.52307 -26.11903 -25.61543 -24.10378 -23.70028 -22.86312 -21.46763 -21.06294 -20.18517 -19.38858 -18.70393 -18.03139 -17.53883 -17.15766 -16.91297 -16.59890 -16.38014 -16.25396 -15.89808 -15.74849 -15.18983 -15.09638 -15.07196 -14.74289 -14.59567 -14.44662 -14.40191 -14.20231 -13.76475 -13.44972 -13.39684 -13.05219 -12.85908 -12.82377 -12.71141 -12.68284 -12.42181 -12.18850 -12.09042 -12.05445 -11.99939 -11.59505 -11.53660 -11.41556 -10.99049 -10.69285 -10.11027 -10.07854 -9.77316 -9.52069 -9.01980 -7.93837 -5.21940 0.33032 0.55044 1.47578 1.49997 1.53028 1.55842 1.59311 2.20512 2.31471 2.56458 2.94255 3.40424 3.43794 3.59574 3.66514 3.72966 3.77690 3.88912 4.00899 4.05454 4.16867 4.19711 4.25711 4.38094 4.42341 4.55321 4.60821 4.62932 4.70643 4.73565 4.77665 4.82056 4.87537 5.01237 5.02104 5.08194 5.13390 5.21296 5.23600 5.38534 5.42621 5.50690 5.57185 5.65106 5.81090 5.85686 6.11858 6.28555 6.29369 6.50556 7.16357 7.18498 7.34862 8.09579 8.33834 9.29491 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011672 B = 0.002138 C = 0.001926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2398.226827 B =13093.899421 C =14537.355815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.198 3.802 3 H 0.053 0.947 4 N -0.734 5.734 5 C -0.239 4.239 6 H 0.076 0.924 7 C -0.075 4.075 8 N -0.969 5.969 9 Si 0.970 3.030 10 H -0.279 1.279 11 H -0.297 1.297 12 H -0.279 1.279 13 C -0.075 4.075 14 C -0.123 4.123 15 C -0.093 4.093 16 C -0.115 4.115 17 C 0.172 3.828 18 N -0.717 5.717 19 C 0.522 3.478 20 O -0.572 6.572 21 C -0.104 4.104 22 H 0.125 0.875 23 C -0.115 4.115 24 C 0.110 3.890 25 N -0.711 5.711 26 C 0.520 3.480 27 O -0.607 6.607 28 C -0.122 4.122 29 C -0.098 4.098 30 C -0.124 4.124 31 H 0.042 0.958 32 H 0.069 0.931 33 H 0.040 0.960 34 H 0.375 0.625 35 H 0.250 0.750 36 H 0.135 0.865 37 H 0.147 0.853 38 H 0.080 0.920 39 H 0.074 0.926 40 H 0.411 0.589 41 H 0.099 0.901 42 H 0.072 0.928 43 H 0.088 0.912 44 H 0.107 0.893 45 H 0.405 0.595 46 H 0.108 0.892 47 H 0.112 0.888 48 H 0.133 0.867 49 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.918 -6.191 -24.648 26.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.090 3.910 3 H 0.071 0.929 4 N -0.375 5.375 5 C -0.371 4.371 6 H 0.094 0.906 7 C -0.267 4.267 8 N -0.620 5.620 9 Si 0.800 3.200 10 H -0.205 1.205 11 H -0.223 1.223 12 H -0.205 1.205 13 C -0.076 4.076 14 C -0.141 4.141 15 C -0.112 4.112 16 C -0.116 4.116 17 C 0.049 3.951 18 N -0.368 5.368 19 C 0.309 3.691 20 O -0.451 6.451 21 C -0.125 4.125 22 H 0.143 0.857 23 C -0.153 4.153 24 C -0.013 4.013 25 N -0.362 5.362 26 C 0.308 3.692 27 O -0.490 6.490 28 C -0.162 4.162 29 C -0.116 4.116 30 C -0.143 4.143 31 H 0.061 0.939 32 H 0.088 0.912 33 H 0.059 0.941 34 H 0.208 0.792 35 H 0.059 0.941 36 H 0.153 0.847 37 H 0.165 0.835 38 H 0.099 0.901 39 H 0.092 0.908 40 H 0.247 0.753 41 H 0.117 0.883 42 H 0.090 0.910 43 H 0.106 0.894 44 H 0.125 0.875 45 H 0.241 0.759 46 H 0.126 0.874 47 H 0.130 0.870 48 H 0.151 0.849 49 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 7.591 -5.891 -25.019 26.800 hybrid contribution 0.480 0.141 1.818 1.886 sum 8.071 -5.751 -23.200 25.228 Atomic orbital electron populations 1.22260 0.96900 1.00878 1.00857 1.19416 0.92975 0.94693 0.83879 0.92864 1.42702 1.78494 1.10443 1.05882 1.19588 1.35003 0.94286 0.88244 0.90610 1.25511 1.02963 0.96900 1.01337 1.69798 1.52538 1.10173 1.29464 0.85256 0.77932 0.77337 0.79508 1.20468 1.22312 1.20487 1.20314 0.97450 0.94280 0.95518 1.21191 0.99486 1.00595 0.92857 1.21224 0.98125 0.93713 0.98091 1.19775 1.02470 0.93882 0.95458 1.20079 0.80341 0.99959 0.94748 1.46157 1.08838 1.59491 1.22330 1.20734 0.89779 0.76548 0.81990 1.90708 1.70821 1.51661 1.31923 1.21463 0.90057 0.97899 1.03101 0.85745 1.21722 0.95187 1.02451 0.95988 1.21653 0.90780 0.86730 1.02183 1.45537 1.11912 1.17305 1.61421 1.20269 0.91464 0.81439 0.76027 1.90780 1.63271 1.42771 1.52144 1.21610 0.90085 0.98007 1.06515 1.21136 0.97850 1.00338 0.92294 1.20972 1.00780 0.94381 0.98154 0.93931 0.91234 0.94080 0.79184 0.94082 0.84668 0.83519 0.90133 0.90769 0.75296 0.88252 0.90967 0.89420 0.87511 0.75854 0.87389 0.87008 0.84875 0.87916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.25 9.47 71.98 0.68 -4.57 16 2 C 0.20 7.73 3.09 44.25 0.14 7.87 16 3 H 0.05 2.08 7.94 -2.38 -0.02 2.06 16 4 N -0.73 -36.54 5.07 -326.50 -1.66 -38.20 16 5 C -0.24 -13.15 9.93 84.03 0.83 -12.32 16 6 H 0.08 3.98 7.83 -2.91 -0.02 3.96 16 7 C -0.07 -4.27 5.50 84.86 0.47 -3.80 16 8 N -0.97 -58.84 13.06 21.65 0.28 -58.56 16 9 Si 0.97 45.94 29.55 68.60 2.03 47.96 16 10 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 11 H -0.30 -14.20 7.11 99.48 0.71 -13.50 16 12 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 13 C -0.07 -2.46 4.95 -19.87 -0.10 -2.56 16 14 C -0.12 -3.22 9.67 22.27 0.22 -3.00 16 15 C -0.09 -1.96 9.70 22.27 0.22 -1.75 16 16 C -0.12 -2.41 5.25 -19.86 -0.10 -2.51 16 17 C 0.17 2.98 5.80 85.63 0.50 3.48 16 18 N -0.72 -10.95 5.46 -466.79 -2.55 -13.50 16 19 C 0.52 8.47 7.13 87.66 0.63 9.10 16 20 O -0.57 -13.24 15.90 -3.03 -0.05 -13.29 16 21 C -0.10 -1.10 2.60 -11.40 -0.03 -1.13 16 22 H 0.12 0.96 8.13 -2.39 -0.02 0.94 16 23 C -0.12 -0.98 4.71 30.68 0.14 -0.83 16 24 C 0.11 0.51 7.17 86.49 0.62 1.13 16 25 N -0.71 -7.49 5.45 -467.32 -2.55 -10.03 16 26 C 0.52 9.08 7.71 87.72 0.68 9.76 16 27 O -0.61 -16.85 17.78 -3.02 -0.05 -16.91 16 28 C -0.12 -1.57 5.20 29.71 0.15 -1.42 16 29 C -0.10 -2.46 9.70 22.27 0.22 -2.25 16 30 C -0.12 -4.03 9.06 22.27 0.20 -3.83 16 31 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 33 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.37 19.93 6.07 -92.70 -0.56 19.36 16 35 H 0.25 14.82 8.31 -92.71 -0.77 14.04 16 36 H 0.14 3.09 8.04 -2.91 -0.02 3.07 16 37 H 0.15 2.28 8.06 -2.91 -0.02 2.25 16 38 H 0.08 1.35 8.09 -2.39 -0.02 1.33 16 39 H 0.07 1.35 8.08 -2.39 -0.02 1.33 16 40 H 0.41 5.49 8.19 -92.71 -0.76 4.73 16 41 H 0.10 0.85 7.89 -2.38 -0.02 0.84 16 42 H 0.07 0.76 8.12 -2.39 -0.02 0.74 16 43 H 0.09 0.20 8.14 -2.39 -0.02 0.18 16 44 H 0.11 0.07 8.14 -2.39 -0.02 0.05 16 45 H 0.41 3.71 8.80 -92.71 -0.82 2.89 16 46 H 0.11 1.37 8.09 -2.39 -0.02 1.36 16 47 H 0.11 1.39 7.95 -2.39 -0.02 1.37 16 48 H 0.13 2.90 8.06 -2.91 -0.02 2.88 16 49 H 0.10 3.80 6.92 -2.91 -0.02 3.78 16 Total: -1.00 -76.27 405.51 -0.24 -76.51 By element: Atomic # 1 Polarization: 35.80 SS G_CDS: -1.15 Total: 34.65 kcal Atomic # 6 Polarization: -14.09 SS G_CDS: 5.45 Total: -8.64 kcal Atomic # 7 Polarization: -113.82 SS G_CDS: -6.47 Total: -120.29 kcal Atomic # 8 Polarization: -30.09 SS G_CDS: -0.10 Total: -30.19 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 2.03 Total: 47.96 kcal Total: -76.27 -0.24 -76.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672937546.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.668 kcal (2) G-P(sol) polarization free energy of solvation -76.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds