Wall clock time and date at job start Wed Apr 1 2020 03:25:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 N 1.46500 * 109.47023 * 120.00071 * 2 1 3 5 5 C 1.36931 * 119.99971 * 274.99678 * 4 2 1 6 6 H 1.08005 * 120.00425 * 359.97438 * 5 4 2 7 7 C 1.38812 * 120.00390 * 180.02562 * 5 4 2 8 8 N 1.31624 * 119.99556 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00553 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47011 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.47353 * 119.99952 * 9 7 5 12 12 H 1.48499 * 109.47342 * 239.99965 * 9 7 5 13 13 C 1.50703 * 109.46912 * 239.99922 * 2 1 3 14 14 C 1.38233 * 119.99662 * 279.72689 * 13 2 1 15 15 C 1.38240 * 119.99763 * 179.76498 * 14 13 2 16 16 C 1.38238 * 119.99745 * 0.48587 * 15 14 13 17 17 C 1.50703 * 119.99977 * 179.76499 * 16 15 14 18 18 N 1.46498 * 109.47193 * 270.02537 * 17 16 15 19 19 C 1.34779 * 119.99760 * 179.97438 * 18 17 16 20 20 O 1.21270 * 120.00069 * 0.02562 * 19 18 17 21 21 C 1.50700 * 119.99750 * 179.97438 * 19 18 17 22 22 C 1.52997 * 109.47344 * 180.02562 * 21 19 18 23 23 H 1.09004 * 110.21605 * 306.93047 * 22 21 19 24 24 C 1.54476 * 110.24942 * 185.00409 * 22 21 19 25 25 C 1.54639 * 101.76357 * 215.58277 * 24 22 21 26 26 C 1.51276 * 104.19426 * 24.79828 * 25 24 22 27 27 O 1.21279 * 124.94224 * 163.75047 * 26 25 24 28 28 N 1.34422 * 110.11836 * 343.74159 * 26 25 24 29 29 C 1.38230 * 120.00026 * 359.79205 * 16 15 14 30 30 C 1.38231 * 120.00201 * 359.95424 * 29 16 15 31 31 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 32 32 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 33 33 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 34 34 H 0.97004 * 120.00223 * 94.99655 * 4 2 1 35 35 H 0.96997 * 119.99679 * 179.97438 * 8 7 5 36 36 H 1.08003 * 120.00479 * 0.02562 * 14 13 2 37 37 H 1.07996 * 120.00487 * 180.25275 * 15 14 13 38 38 H 1.09002 * 109.46637 * 30.02498 * 17 16 15 39 39 H 1.08998 * 109.47319 * 150.02276 * 17 16 15 40 40 H 0.97001 * 120.00089 * 0.02562 * 18 17 16 41 41 H 1.09004 * 109.47699 * 300.00440 * 21 19 18 42 42 H 1.08998 * 109.47096 * 60.00097 * 21 19 18 43 43 H 1.08999 * 110.97080 * 333.69855 * 24 22 21 44 44 H 1.08994 * 110.97605 * 97.46572 * 24 22 21 45 45 H 1.09003 * 110.48421 * 143.46952 * 25 24 22 46 46 H 1.08989 * 110.48484 * 266.11615 * 25 24 22 47 47 H 0.97000 * 124.35313 * 179.56592 * 28 26 25 48 48 H 1.08003 * 120.00063 * 179.97438 * 29 16 15 49 49 H 1.08003 * 120.00511 * 180.02562 * 30 29 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1491 -0.0075 2.3757 6 1 1.8927 1.0405 2.4242 7 6 2.6123 -0.6617 3.5090 8 7 2.9253 -1.9388 3.4499 9 14 2.7901 0.2700 5.1183 10 1 2.3753 1.6822 4.9211 11 1 1.9299 -0.3594 6.1523 12 1 4.2071 0.2280 5.5606 13 6 2.0323 -0.7104 -1.2305 14 6 2.0719 -2.0918 -1.2632 15 6 2.5281 -2.7436 -2.3937 16 6 2.9541 -2.0138 -3.4877 17 6 3.4563 -2.7242 -4.7182 18 7 4.9015 -2.9355 -4.6044 19 6 5.5717 -3.5573 -5.5947 20 8 4.9785 -3.9414 -6.5802 21 6 7.0584 -3.7742 -5.4779 22 6 7.5684 -4.4955 -6.7270 23 1 6.9897 -5.4028 -6.9007 24 6 9.0666 -4.8388 -6.5721 25 6 9.5840 -4.6518 -8.0173 26 6 8.6048 -3.6807 -8.6391 27 8 8.7987 -3.0577 -9.6614 28 7 7.4884 -3.6089 -7.8938 29 6 2.9198 -0.6324 -3.4528 30 6 2.4587 0.0193 -2.3243 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 2.2490 -1.6318 1.1526 35 1 3.2493 -2.3958 4.2417 36 1 1.7426 -2.6620 -0.4071 37 1 2.5553 -3.8229 -2.4208 38 1 2.9546 -3.6874 -4.8119 39 1 3.2461 -2.1178 -5.5992 40 1 5.3760 -2.6286 -3.8159 41 1 7.5600 -2.8109 -5.3848 42 1 7.2691 -4.3800 -4.5966 43 1 9.5571 -4.1450 -5.8893 44 1 9.1987 -5.8687 -6.2407 45 1 10.5886 -4.2289 -8.0111 46 1 9.5718 -5.6011 -8.5526 47 1 6.7279 -3.0433 -8.1003 48 1 3.2529 -0.0621 -4.3074 49 1 2.4315 1.0987 -2.2972 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001672943397.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:25:21 Heat of formation + Delta-G solvation = -48.249749 kcal Electronic energy + Delta-G solvation = -28646.993826 eV Core-core repulsion = 24573.366258 eV Total energy + Delta-G solvation = -4073.627568 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.94764 -39.88740 -39.18126 -36.93252 -36.02670 -34.62488 -32.49925 -31.69147 -31.64216 -30.78809 -30.20192 -28.40671 -26.62850 -25.12341 -23.91293 -22.67042 -22.00766 -21.62140 -20.98499 -20.62297 -19.77801 -17.80043 -17.59465 -17.37274 -16.89686 -16.34649 -15.83358 -15.64965 -15.21737 -14.96948 -14.84557 -14.41162 -14.12111 -14.10292 -13.81641 -13.56823 -13.44034 -13.26171 -13.15744 -13.04893 -12.97494 -12.70159 -12.31648 -12.14669 -12.06111 -11.91279 -11.69749 -11.52665 -11.22311 -10.98024 -10.90768 -10.68506 -10.34981 -10.24755 -10.17150 -10.03282 -9.74752 -9.45701 -9.35590 -9.04747 -8.72266 -8.40005 -7.06416 -5.85354 -3.14099 1.38296 1.60733 2.28705 2.30477 2.95336 3.04508 3.37542 3.43601 3.45512 3.86134 3.95463 4.01185 4.20501 4.40767 4.52274 4.61732 4.62504 4.76766 4.82351 4.90606 4.99421 5.13267 5.20819 5.22767 5.25003 5.31787 5.37321 5.49264 5.51342 5.57847 5.65090 5.70979 5.88911 5.95634 6.10251 6.17721 6.24598 6.28453 6.43793 6.48933 6.55366 6.64445 6.69720 6.75042 6.88969 7.09104 7.17835 7.21659 7.63101 7.87443 7.95831 8.33029 9.44629 9.99702 10.34982 11.37334 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.015892 B = 0.001752 C = 0.001646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.518402 B =15979.323206 C =17002.616277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.203 3.797 3 H 0.056 0.944 4 N -0.721 5.721 5 C -0.239 4.239 6 H 0.072 0.928 7 C -0.013 4.013 8 N -0.932 5.932 9 Si 0.907 3.093 10 H -0.280 1.280 11 H -0.291 1.291 12 H -0.291 1.291 13 C -0.052 4.052 14 C -0.106 4.106 15 C -0.099 4.099 16 C -0.132 4.132 17 C 0.167 3.833 18 N -0.722 5.722 19 C 0.509 3.491 20 O -0.544 6.544 21 C -0.155 4.155 22 C 0.147 3.853 23 H 0.092 0.908 24 C -0.131 4.131 25 C -0.157 4.157 26 C 0.516 3.484 27 O -0.540 6.540 28 N -0.718 5.718 29 C -0.102 4.102 30 C -0.121 4.121 31 H 0.057 0.943 32 H 0.038 0.962 33 H 0.048 0.952 34 H 0.385 0.615 35 H 0.255 0.745 36 H 0.129 0.871 37 H 0.119 0.881 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.405 0.595 41 H 0.103 0.897 42 H 0.113 0.887 43 H 0.086 0.914 44 H 0.094 0.906 45 H 0.102 0.898 46 H 0.105 0.895 47 H 0.414 0.586 48 H 0.117 0.883 49 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.717 -5.855 -18.778 21.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.093 3.907 3 H 0.074 0.926 4 N -0.364 5.364 5 C -0.370 4.370 6 H 0.090 0.910 7 C -0.209 4.209 8 N -0.580 5.580 9 Si 0.738 3.262 10 H -0.205 1.205 11 H -0.218 1.218 12 H -0.219 1.219 13 C -0.053 4.053 14 C -0.124 4.124 15 C -0.117 4.117 16 C -0.133 4.133 17 C 0.044 3.956 18 N -0.373 5.373 19 C 0.296 3.704 20 O -0.422 6.422 21 C -0.196 4.196 22 C 0.041 3.959 23 H 0.110 0.890 24 C -0.168 4.168 25 C -0.197 4.197 26 C 0.302 3.698 27 O -0.417 6.417 28 N -0.374 5.374 29 C -0.121 4.121 30 C -0.140 4.140 31 H 0.077 0.923 32 H 0.057 0.943 33 H 0.067 0.933 34 H 0.220 0.780 35 H 0.065 0.935 36 H 0.147 0.853 37 H 0.137 0.863 38 H 0.092 0.908 39 H 0.091 0.909 40 H 0.240 0.760 41 H 0.121 0.879 42 H 0.131 0.869 43 H 0.105 0.895 44 H 0.113 0.887 45 H 0.121 0.879 46 H 0.123 0.877 47 H 0.253 0.747 48 H 0.135 0.865 49 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 8.488 -5.753 -19.847 22.339 hybrid contribution -0.075 0.523 1.502 1.593 sum 8.413 -5.229 -18.344 20.848 Atomic orbital electron populations 1.22420 0.98184 1.01185 1.00199 1.19263 0.92194 0.95019 0.84200 0.92585 1.42524 1.78218 1.10699 1.04922 1.19290 1.36577 0.94036 0.87122 0.90997 1.24745 1.02015 0.96023 0.98124 1.69666 1.50812 1.08677 1.28888 0.86112 0.77326 0.78817 0.83895 1.20520 1.21837 1.21857 1.20544 0.95115 0.94062 0.95616 1.21098 0.99090 0.94442 0.97762 1.21013 0.98455 0.99459 0.92816 1.19638 1.04178 0.93842 0.95629 1.20145 0.79819 1.00017 0.95603 1.46205 1.09286 1.59741 1.22104 1.20637 0.89558 0.77418 0.82808 1.90727 1.70174 1.50516 1.30741 1.22131 0.93030 1.04018 1.00378 1.21431 0.96669 0.93496 0.84306 0.89002 1.22734 0.93560 1.03923 0.96628 1.22355 1.00114 1.00724 0.96480 1.20910 0.83441 0.82122 0.83329 1.90762 1.78941 1.47965 1.24060 1.46352 1.19387 1.45193 1.26511 1.20919 0.99645 0.93497 0.98024 1.21026 0.99965 0.99843 0.93150 0.92347 0.94302 0.93305 0.78013 0.93506 0.85341 0.86341 0.90788 0.90904 0.76023 0.87882 0.86888 0.89487 0.88710 0.87946 0.87705 0.74653 0.86527 0.86101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.78 9.47 37.16 0.35 -2.42 16 2 C 0.20 3.86 3.09 -69.08 -0.21 3.64 16 3 H 0.06 1.07 7.94 -51.93 -0.41 0.66 16 4 N -0.72 -17.20 5.07 -54.55 -0.28 -17.48 16 5 C -0.24 -6.38 9.93 -15.06 -0.15 -6.53 16 6 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 7 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 8 N -0.93 -27.15 13.06 55.49 0.72 -26.42 16 9 Si 0.91 21.72 29.55 -169.99 -5.02 16.70 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 12 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 13 C -0.05 -0.85 4.96 -104.62 -0.52 -1.37 16 14 C -0.11 -1.66 9.06 -39.58 -0.36 -2.02 16 15 C -0.10 -1.27 9.70 -39.58 -0.38 -1.66 16 16 C -0.13 -1.51 5.25 -104.62 -0.55 -2.06 16 17 C 0.17 1.64 5.80 -5.19 -0.03 1.61 16 18 N -0.72 -5.98 5.55 -61.47 -0.34 -6.32 16 19 C 0.51 4.33 7.66 -10.98 -0.08 4.25 16 20 O -0.54 -6.49 15.03 5.57 0.08 -6.41 16 21 C -0.15 -0.76 5.30 -27.88 -0.15 -0.91 16 22 C 0.15 0.83 3.00 -67.01 -0.20 0.63 16 23 H 0.09 0.58 7.91 -51.93 -0.41 0.17 16 24 C -0.13 -0.44 6.69 -25.09 -0.17 -0.61 16 25 C -0.16 -0.84 6.86 -26.74 -0.18 -1.02 16 26 C 0.52 5.06 8.43 -10.86 -0.09 4.97 16 27 O -0.54 -7.81 18.03 5.56 0.10 -7.71 16 28 N -0.72 -6.04 5.62 -52.76 -0.30 -6.33 16 29 C -0.10 -1.20 9.70 -39.59 -0.38 -1.59 16 30 C -0.12 -1.67 9.67 -39.59 -0.38 -2.05 16 31 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 32 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.38 9.64 6.05 -40.82 -0.25 9.40 16 35 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 36 H 0.13 2.20 6.90 -52.48 -0.36 1.83 16 37 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 38 H 0.07 0.76 8.09 -51.93 -0.42 0.34 16 39 H 0.07 0.73 8.09 -51.93 -0.42 0.31 16 40 H 0.41 2.87 8.46 -40.82 -0.35 2.53 16 41 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.11 0.32 8.14 -51.93 -0.42 -0.11 16 43 H 0.09 0.22 7.91 -51.93 -0.41 -0.20 16 44 H 0.09 0.16 8.14 -51.93 -0.42 -0.27 16 45 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.10 0.45 8.14 -51.94 -0.42 0.03 16 47 H 0.41 3.95 8.12 -40.82 -0.33 3.62 16 48 H 0.12 1.14 8.06 -52.48 -0.42 0.71 16 49 H 0.12 1.49 8.04 -52.48 -0.42 1.07 16 LS Contribution 408.20 15.07 6.15 6.15 Total: -1.00 -34.16 408.20 -10.02 -44.18 By element: Atomic # 1 Polarization: 18.79 SS G_CDS: -7.56 Total: 11.23 kcal Atomic # 6 Polarization: -4.00 SS G_CDS: -3.59 Total: -7.59 kcal Atomic # 7 Polarization: -56.37 SS G_CDS: -0.19 Total: -56.56 kcal Atomic # 8 Polarization: -14.30 SS G_CDS: 0.18 Total: -14.11 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -34.16 -10.02 -44.18 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672943397.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.069 kcal (2) G-P(sol) polarization free energy of solvation -34.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds