Wall clock time and date at job start Wed Apr 1 2020 03:25:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 N 1.46500 * 109.47023 * 120.00071 * 2 1 3 5 5 C 1.36931 * 119.99971 * 274.99678 * 4 2 1 6 6 H 1.08005 * 120.00425 * 359.97438 * 5 4 2 7 7 C 1.38812 * 120.00390 * 180.02562 * 5 4 2 8 8 N 1.31624 * 119.99556 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00553 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47011 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.47353 * 119.99952 * 9 7 5 12 12 H 1.48499 * 109.47342 * 239.99965 * 9 7 5 13 13 C 1.50703 * 109.46912 * 239.99922 * 2 1 3 14 14 C 1.38233 * 119.99662 * 279.72689 * 13 2 1 15 15 C 1.38240 * 119.99763 * 179.76498 * 14 13 2 16 16 C 1.38238 * 119.99745 * 0.48587 * 15 14 13 17 17 C 1.50703 * 119.99977 * 179.76499 * 16 15 14 18 18 N 1.46498 * 109.47193 * 270.02537 * 17 16 15 19 19 C 1.34779 * 119.99760 * 179.97438 * 18 17 16 20 20 O 1.21270 * 120.00069 * 0.02562 * 19 18 17 21 21 C 1.50700 * 119.99750 * 179.97438 * 19 18 17 22 22 C 1.52997 * 109.47344 * 180.02562 * 21 19 18 23 23 H 1.09004 * 110.21605 * 306.93047 * 22 21 19 24 24 C 1.54476 * 110.24942 * 185.00409 * 22 21 19 25 25 C 1.54639 * 101.76357 * 215.58277 * 24 22 21 26 26 C 1.51276 * 104.19426 * 24.79828 * 25 24 22 27 27 O 1.21279 * 124.94224 * 163.75047 * 26 25 24 28 28 N 1.34422 * 110.11836 * 343.74159 * 26 25 24 29 29 C 1.38230 * 120.00026 * 359.79205 * 16 15 14 30 30 C 1.38231 * 120.00201 * 359.95424 * 29 16 15 31 31 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 32 32 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 33 33 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 34 34 H 0.97004 * 120.00223 * 94.99655 * 4 2 1 35 35 H 0.96997 * 119.99679 * 179.97438 * 8 7 5 36 36 H 1.08003 * 120.00479 * 0.02562 * 14 13 2 37 37 H 1.07996 * 120.00487 * 180.25275 * 15 14 13 38 38 H 1.09002 * 109.46637 * 30.02498 * 17 16 15 39 39 H 1.08998 * 109.47319 * 150.02276 * 17 16 15 40 40 H 0.97001 * 120.00089 * 0.02562 * 18 17 16 41 41 H 1.09004 * 109.47699 * 300.00440 * 21 19 18 42 42 H 1.08998 * 109.47096 * 60.00097 * 21 19 18 43 43 H 1.08999 * 110.97080 * 333.69855 * 24 22 21 44 44 H 1.08994 * 110.97605 * 97.46572 * 24 22 21 45 45 H 1.09003 * 110.48421 * 143.46952 * 25 24 22 46 46 H 1.08989 * 110.48484 * 266.11615 * 25 24 22 47 47 H 0.97000 * 124.35313 * 179.56592 * 28 26 25 48 48 H 1.08003 * 120.00063 * 179.97438 * 29 16 15 49 49 H 1.08003 * 120.00511 * 180.02562 * 30 29 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1491 -0.0075 2.3757 6 1 1.8927 1.0405 2.4242 7 6 2.6123 -0.6617 3.5090 8 7 2.9253 -1.9388 3.4499 9 14 2.7901 0.2700 5.1183 10 1 2.3753 1.6822 4.9211 11 1 1.9299 -0.3594 6.1523 12 1 4.2071 0.2280 5.5606 13 6 2.0323 -0.7104 -1.2305 14 6 2.0719 -2.0918 -1.2632 15 6 2.5281 -2.7436 -2.3937 16 6 2.9541 -2.0138 -3.4877 17 6 3.4563 -2.7242 -4.7182 18 7 4.9015 -2.9355 -4.6044 19 6 5.5717 -3.5573 -5.5947 20 8 4.9785 -3.9414 -6.5802 21 6 7.0584 -3.7742 -5.4779 22 6 7.5684 -4.4955 -6.7270 23 1 6.9897 -5.4028 -6.9007 24 6 9.0666 -4.8388 -6.5721 25 6 9.5840 -4.6518 -8.0173 26 6 8.6048 -3.6807 -8.6391 27 8 8.7987 -3.0577 -9.6614 28 7 7.4884 -3.6089 -7.8938 29 6 2.9198 -0.6324 -3.4528 30 6 2.4587 0.0193 -2.3243 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 2.2490 -1.6318 1.1526 35 1 3.2493 -2.3958 4.2417 36 1 1.7426 -2.6620 -0.4071 37 1 2.5553 -3.8229 -2.4208 38 1 2.9546 -3.6874 -4.8119 39 1 3.2461 -2.1178 -5.5992 40 1 5.3760 -2.6286 -3.8159 41 1 7.5600 -2.8109 -5.3848 42 1 7.2691 -4.3800 -4.5966 43 1 9.5571 -4.1450 -5.8893 44 1 9.1987 -5.8687 -6.2407 45 1 10.5886 -4.2289 -8.0111 46 1 9.5718 -5.6011 -8.5526 47 1 6.7279 -3.0433 -8.1003 48 1 3.2529 -0.0621 -4.3074 49 1 2.4315 1.0987 -2.2972 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672943397.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:25:20 Heat of formation + Delta-G solvation = -72.387607 kcal Electronic energy + Delta-G solvation = -28648.040522 eV Core-core repulsion = 24573.366258 eV Total energy + Delta-G solvation = -4074.674264 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.56815 -40.77568 -40.12827 -37.72083 -37.32906 -35.71251 -34.12070 -32.48190 -32.12258 -31.86433 -31.37322 -29.99334 -27.48914 -26.08747 -25.50242 -23.79300 -22.98803 -22.31522 -21.61822 -21.28163 -21.04041 -19.39179 -18.37554 -18.21126 -17.48881 -17.29806 -16.89946 -16.71921 -16.29995 -16.04438 -15.78657 -15.67490 -15.12555 -15.05465 -14.78205 -14.74232 -14.46212 -14.31103 -14.21796 -13.81721 -13.73807 -13.49421 -13.42744 -13.38196 -13.04382 -12.86755 -12.70911 -12.64831 -12.43580 -12.31720 -12.08859 -12.00620 -11.90404 -11.60354 -11.53552 -11.02389 -10.95984 -10.92352 -10.12851 -10.08385 -9.78778 -9.53177 -9.01992 -7.94090 -5.22122 0.32062 0.53565 1.48097 1.48525 1.58191 1.58238 1.65582 2.26018 2.44833 2.56387 2.94153 3.40426 3.42548 3.54316 3.67583 3.84096 3.87408 3.93834 3.99722 4.05124 4.15785 4.25292 4.36036 4.40442 4.45262 4.54663 4.59426 4.65548 4.73823 4.77075 4.80635 4.88261 4.91644 5.00536 5.07208 5.12206 5.14062 5.22509 5.26808 5.40065 5.42113 5.51423 5.56115 5.63866 5.84547 5.85279 6.08244 6.10394 6.28646 6.55339 7.21656 7.25479 7.34951 8.09230 8.33655 9.29565 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.015892 B = 0.001752 C = 0.001646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.518402 B =15979.323206 C =17002.616277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.198 3.802 3 H 0.054 0.946 4 N -0.733 5.733 5 C -0.237 4.237 6 H 0.076 0.924 7 C -0.076 4.076 8 N -0.969 5.969 9 Si 0.970 3.030 10 H -0.267 1.267 11 H -0.296 1.296 12 H -0.294 1.294 13 C -0.074 4.074 14 C -0.124 4.124 15 C -0.097 4.097 16 C -0.114 4.114 17 C 0.172 3.828 18 N -0.717 5.717 19 C 0.507 3.493 20 O -0.582 6.582 21 C -0.146 4.146 22 C 0.141 3.859 23 H 0.085 0.915 24 C -0.116 4.116 25 C -0.150 4.150 26 C 0.502 3.498 27 O -0.600 6.600 28 N -0.719 5.719 29 C -0.094 4.094 30 C -0.122 4.122 31 H 0.042 0.958 32 H 0.068 0.932 33 H 0.040 0.960 34 H 0.375 0.625 35 H 0.250 0.750 36 H 0.104 0.896 37 H 0.133 0.867 38 H 0.071 0.929 39 H 0.075 0.925 40 H 0.413 0.587 41 H 0.118 0.882 42 H 0.144 0.856 43 H 0.103 0.897 44 H 0.121 0.879 45 H 0.112 0.888 46 H 0.117 0.883 47 H 0.404 0.596 48 H 0.145 0.855 49 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.992 -5.670 -19.266 22.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.090 3.910 3 H 0.072 0.928 4 N -0.375 5.375 5 C -0.369 4.369 6 H 0.094 0.906 7 C -0.268 4.268 8 N -0.619 5.619 9 Si 0.800 3.200 10 H -0.191 1.191 11 H -0.223 1.223 12 H -0.221 1.221 13 C -0.075 4.075 14 C -0.142 4.142 15 C -0.116 4.116 16 C -0.115 4.115 17 C 0.049 3.951 18 N -0.369 5.369 19 C 0.295 3.705 20 O -0.462 6.462 21 C -0.186 4.186 22 C 0.036 3.964 23 H 0.103 0.897 24 C -0.154 4.154 25 C -0.190 4.190 26 C 0.291 3.709 27 O -0.481 6.481 28 N -0.372 5.372 29 C -0.113 4.113 30 C -0.141 4.141 31 H 0.061 0.939 32 H 0.087 0.913 33 H 0.059 0.941 34 H 0.209 0.791 35 H 0.059 0.941 36 H 0.122 0.878 37 H 0.151 0.849 38 H 0.089 0.911 39 H 0.093 0.907 40 H 0.249 0.751 41 H 0.136 0.864 42 H 0.162 0.838 43 H 0.122 0.878 44 H 0.139 0.861 45 H 0.131 0.869 46 H 0.135 0.865 47 H 0.242 0.758 48 H 0.162 0.838 49 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 9.743 -5.546 -20.316 23.204 hybrid contribution -0.546 0.463 1.514 1.675 sum 9.197 -5.083 -18.801 21.539 Atomic orbital electron populations 1.22264 0.96953 1.00871 1.00855 1.19418 0.92939 0.94738 0.83881 0.92769 1.42711 1.78446 1.10460 1.05868 1.19661 1.34743 0.94279 0.88211 0.90574 1.25512 1.03036 0.96921 1.01312 1.69814 1.52673 1.10131 1.29324 0.85114 0.76743 0.78212 0.79941 1.19092 1.22307 1.22114 1.20311 0.97420 0.94268 0.95522 1.20981 1.00697 0.94389 0.98162 1.21126 0.97886 1.00318 0.92242 1.19764 1.02485 0.93856 0.95389 1.20018 0.80852 0.99680 0.94584 1.46133 1.08603 1.59645 1.22512 1.21267 0.90940 0.76360 0.81917 1.90720 1.71262 1.52040 1.32183 1.22171 0.90059 1.05295 1.01059 1.21652 0.98517 0.92722 0.83506 0.89691 1.22792 0.91199 1.05987 0.95419 1.22401 0.99266 0.99803 0.97536 1.21754 0.84445 0.82082 0.82652 1.90717 1.80231 1.50520 1.26681 1.46566 1.18612 1.44829 1.27178 1.21199 0.98285 0.93717 0.98051 1.21184 0.99452 1.00595 0.92836 0.93886 0.91307 0.94095 0.79148 0.94085 0.87839 0.84891 0.91106 0.90684 0.75060 0.86438 0.83802 0.87833 0.86078 0.86944 0.86502 0.75817 0.83752 0.84650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.18 9.47 71.98 0.68 -4.50 16 2 C 0.20 7.56 3.09 44.25 0.14 7.70 16 3 H 0.05 2.06 7.94 -2.39 -0.02 2.04 16 4 N -0.73 -35.75 5.07 -326.49 -1.66 -37.41 16 5 C -0.24 -12.78 9.93 84.03 0.83 -11.95 16 6 H 0.08 3.94 7.83 -2.91 -0.02 3.92 16 7 C -0.08 -4.24 5.50 84.86 0.47 -3.77 16 8 N -0.97 -57.77 13.06 21.65 0.28 -57.49 16 9 Si 0.97 45.11 29.55 68.60 2.03 47.14 16 10 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 11 H -0.30 -13.83 7.11 99.48 0.71 -13.13 16 12 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 13 C -0.07 -2.38 4.96 -19.87 -0.10 -2.48 16 14 C -0.12 -3.92 9.06 22.27 0.20 -3.72 16 15 C -0.10 -2.39 9.70 22.27 0.22 -2.17 16 16 C -0.11 -2.34 5.25 -19.87 -0.10 -2.44 16 17 C 0.17 2.97 5.80 85.63 0.50 3.47 16 18 N -0.72 -10.02 5.55 -466.80 -2.59 -12.61 16 19 C 0.51 7.50 7.66 87.66 0.67 8.17 16 20 O -0.58 -13.22 15.03 -3.00 -0.05 -13.26 16 21 C -0.15 -0.96 5.30 29.85 0.16 -0.80 16 22 C 0.14 1.25 3.00 45.44 0.14 1.39 16 23 H 0.09 0.91 7.91 -2.38 -0.02 0.89 16 24 C -0.12 -0.35 6.69 31.65 0.21 -0.14 16 25 C -0.15 -1.28 6.86 30.59 0.21 -1.07 16 26 C 0.50 9.70 8.43 87.90 0.74 10.44 16 27 O -0.60 -18.00 18.03 -3.03 -0.05 -18.06 16 28 N -0.72 -11.54 5.62 -439.44 -2.47 -14.01 16 29 C -0.09 -1.94 9.70 22.27 0.22 -1.73 16 30 C -0.12 -3.12 9.67 22.27 0.22 -2.90 16 31 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.38 19.53 6.05 -92.71 -0.56 18.97 16 35 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 36 H 0.10 3.75 6.90 -2.91 -0.02 3.73 16 37 H 0.13 2.82 8.06 -2.91 -0.02 2.80 16 38 H 0.07 1.31 8.09 -2.39 -0.02 1.29 16 39 H 0.07 1.31 8.09 -2.39 -0.02 1.29 16 40 H 0.41 4.58 8.46 -92.71 -0.78 3.80 16 41 H 0.12 0.52 8.14 -2.39 -0.02 0.50 16 42 H 0.14 0.14 8.14 -2.39 -0.02 0.12 16 43 H 0.10 0.03 7.91 -2.39 -0.02 0.01 16 44 H 0.12 -0.18 8.14 -2.39 -0.02 -0.20 16 45 H 0.11 0.76 8.14 -2.39 -0.02 0.75 16 46 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16 47 H 0.40 7.76 8.12 -92.71 -0.75 7.01 16 48 H 0.14 2.23 8.06 -2.91 -0.02 2.21 16 49 H 0.14 3.00 8.04 -2.91 -0.02 2.98 16 Total: -1.00 -77.56 408.20 -0.23 -77.79 By element: Atomic # 1 Polarization: 35.54 SS G_CDS: -1.11 Total: 34.43 kcal Atomic # 6 Polarization: -11.90 SS G_CDS: 5.39 Total: -6.51 kcal Atomic # 7 Polarization: -115.09 SS G_CDS: -6.43 Total: -121.52 kcal Atomic # 8 Polarization: -31.22 SS G_CDS: -0.10 Total: -31.32 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -77.56 -0.23 -77.79 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672943397.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.402 kcal (2) G-P(sol) polarization free energy of solvation -77.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds