Wall clock time and date at job start Wed Apr 1 2020 03:25:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.47274 * 2 1 4 4 N 1.46492 * 109.46988 * 120.00159 * 2 1 3 5 5 C 1.36942 * 120.00142 * 274.99635 * 4 2 1 6 6 H 1.08000 * 119.99545 * 0.02562 * 5 4 2 7 7 C 1.38810 * 119.99795 * 179.97438 * 5 4 2 8 8 N 1.31622 * 120.00536 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 119.99860 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47306 * 89.99761 * 9 7 5 11 11 H 1.48494 * 109.47315 * 210.00518 * 9 7 5 12 12 H 1.48509 * 109.47007 * 330.00183 * 9 7 5 13 13 C 1.50703 * 109.47181 * 240.00257 * 2 1 3 14 14 C 1.38238 * 119.99869 * 99.99529 * 13 2 1 15 15 C 1.38232 * 119.99501 * 179.97438 * 14 13 2 16 16 C 1.38233 * 120.00473 * 0.02562 * 15 14 13 17 17 C 1.50699 * 119.99932 * 179.97438 * 16 15 14 18 18 N 1.46496 * 109.47747 * 89.99905 * 17 16 15 19 19 C 1.34771 * 120.00225 * 180.02562 * 18 17 16 20 20 O 1.21284 * 119.99883 * 359.97438 * 19 18 17 21 21 C 1.50699 * 120.00318 * 179.97438 * 19 18 17 22 22 C 1.53002 * 109.47492 * 179.97438 * 21 19 18 23 23 H 1.08994 * 110.28196 * 53.02327 * 22 21 19 24 24 C 1.54479 * 110.24544 * 174.99871 * 22 21 19 25 25 C 1.54623 * 101.76448 * 144.41635 * 24 22 21 26 26 C 1.51286 * 104.19583 * 335.20040 * 25 24 22 27 27 O 1.21283 * 124.94068 * 196.22850 * 26 25 24 28 28 N 1.34417 * 110.11517 * 16.49747 * 26 25 24 29 29 C 1.38234 * 119.99729 * 0.24799 * 16 15 14 30 30 C 1.38231 * 120.00061 * 279.97778 * 13 2 1 31 31 H 1.09002 * 109.47201 * 300.00082 * 1 2 3 32 32 H 1.09003 * 109.47374 * 59.99647 * 1 2 3 33 33 H 1.08996 * 109.47518 * 179.97438 * 1 2 3 34 34 H 0.97007 * 120.00270 * 95.00607 * 4 2 1 35 35 H 0.96996 * 120.00384 * 179.97438 * 8 7 5 36 36 H 1.07994 * 120.00077 * 359.97438 * 14 13 2 37 37 H 1.08008 * 119.99760 * 179.97438 * 15 14 13 38 38 H 1.09000 * 109.47391 * 329.98923 * 17 16 15 39 39 H 1.09011 * 109.46764 * 210.00012 * 17 16 15 40 40 H 0.97001 * 119.99602 * 359.97438 * 18 17 16 41 41 H 1.09005 * 109.47263 * 59.99549 * 21 19 18 42 42 H 1.08998 * 109.46827 * 300.00134 * 21 19 18 43 43 H 1.09006 * 110.97141 * 26.29683 * 24 22 21 44 44 H 1.09002 * 110.97085 * 262.53716 * 24 22 21 45 45 H 1.09000 * 110.48720 * 216.52574 * 25 24 22 46 46 H 1.09003 * 110.60041 * 93.93250 * 25 24 22 47 47 H 0.96995 * 124.34982 * 180.16393 * 28 26 25 48 48 H 1.07997 * 119.99962 * 179.72915 * 29 16 15 49 49 H 1.08005 * 119.99767 * 0.02562 * 30 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1491 -0.0075 2.3757 6 1 1.8919 1.0403 2.4243 7 6 2.6113 -0.6621 3.5092 8 7 2.9243 -1.9392 3.4501 9 14 2.7891 0.2695 5.1185 10 1 1.5211 0.1784 5.8860 11 1 3.8933 -0.3238 5.9146 12 1 3.0943 1.6949 4.8343 13 6 2.0323 -0.7104 -1.2305 14 6 2.4586 0.0196 -2.3243 15 6 2.9199 -0.6321 -3.4528 16 6 2.9544 -2.0135 -3.4877 17 6 3.4568 -2.7238 -4.7182 18 7 4.9020 -2.9350 -4.6045 19 6 5.5723 -3.5557 -5.5953 20 8 4.9790 -3.9398 -6.5809 21 6 7.0591 -3.7723 -5.4787 22 6 7.5690 -4.4936 -6.7280 23 1 7.2572 -3.9602 -7.6259 24 6 9.1085 -4.6137 -6.6850 25 6 9.3356 -5.9942 -7.3435 26 6 8.0390 -6.7365 -7.1055 27 8 7.8954 -7.9359 -7.2137 28 7 7.0680 -5.8726 -6.7626 29 6 2.5228 -2.7435 -2.3960 30 6 2.0672 -2.0918 -1.2653 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 2.2491 -1.6318 1.1525 35 1 3.2475 -2.3965 4.2421 36 1 2.4313 1.0988 -2.2972 37 1 3.2526 -0.0618 -4.3076 38 1 3.2463 -2.1175 -5.5992 39 1 2.9551 -3.6871 -4.8119 40 1 5.3765 -2.6274 -3.8164 41 1 7.2699 -4.3789 -4.5979 42 1 7.5603 -2.8090 -5.3848 43 1 9.4718 -4.6073 -5.6572 44 1 9.5781 -3.8214 -7.2680 45 1 10.1658 -6.5134 -6.8646 46 1 9.5213 -5.8836 -8.4118 47 1 6.1541 -6.1281 -6.5614 48 1 2.5457 -3.8228 -2.4249 49 1 1.7340 -2.6620 -0.4107 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001672943398.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:25:25 Heat of formation + Delta-G solvation = -48.194589 kcal Electronic energy + Delta-G solvation = -28665.489888 eV Core-core repulsion = 24591.864713 eV Total energy + Delta-G solvation = -4073.625176 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.93663 -39.88184 -39.17797 -36.91865 -36.02251 -34.62239 -32.49565 -31.68493 -31.63483 -30.78704 -30.19979 -28.40195 -26.62562 -25.12085 -23.90732 -22.66968 -22.00225 -21.62012 -20.97722 -20.61677 -19.77459 -17.78626 -17.59480 -17.36739 -16.88623 -16.32690 -15.89789 -15.55946 -15.26623 -14.92367 -14.85577 -14.41326 -14.12188 -14.08693 -13.80464 -13.55651 -13.44453 -13.29270 -13.12210 -13.04957 -12.97618 -12.69927 -12.31100 -12.14461 -12.05876 -11.91104 -11.69635 -11.51949 -11.21886 -10.97798 -10.89273 -10.67667 -10.36343 -10.24982 -10.15577 -10.04639 -9.73909 -9.44204 -9.35444 -9.03609 -8.72180 -8.39859 -7.05984 -5.84502 -3.13488 1.38422 1.60823 2.29219 2.31812 2.95439 3.05998 3.38360 3.43683 3.45198 3.86458 3.95957 4.01451 4.20670 4.40997 4.52745 4.61868 4.62801 4.77538 4.82522 4.90711 4.98425 5.13212 5.20793 5.23013 5.25426 5.32116 5.37388 5.49697 5.51398 5.58096 5.65261 5.71337 5.89028 5.95706 6.10320 6.17833 6.24719 6.28704 6.43967 6.50740 6.55481 6.64442 6.69989 6.76924 6.89208 7.09335 7.17957 7.21775 7.62982 7.87600 7.97599 8.33749 9.45209 10.00349 10.35513 11.38061 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.014085 B = 0.001804 C = 0.001678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1987.413155 B =15518.383441 C =16686.755038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.203 3.797 3 H 0.056 0.944 4 N -0.721 5.721 5 C -0.240 4.240 6 H 0.071 0.929 7 C -0.013 4.013 8 N -0.932 5.932 9 Si 0.908 3.092 10 H -0.289 1.289 11 H -0.291 1.291 12 H -0.282 1.282 13 C -0.052 4.052 14 C -0.121 4.121 15 C -0.102 4.102 16 C -0.132 4.132 17 C 0.167 3.833 18 N -0.722 5.722 19 C 0.509 3.491 20 O -0.544 6.544 21 C -0.155 4.155 22 C 0.147 3.853 23 H 0.091 0.909 24 C -0.130 4.130 25 C -0.157 4.157 26 C 0.516 3.484 27 O -0.539 6.539 28 N -0.719 5.719 29 C -0.099 4.099 30 C -0.105 4.105 31 H 0.057 0.943 32 H 0.038 0.962 33 H 0.048 0.952 34 H 0.385 0.615 35 H 0.256 0.744 36 H 0.121 0.879 37 H 0.117 0.883 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.405 0.595 41 H 0.104 0.896 42 H 0.112 0.888 43 H 0.087 0.913 44 H 0.094 0.906 45 H 0.102 0.898 46 H 0.105 0.895 47 H 0.414 0.586 48 H 0.118 0.882 49 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.775 -0.326 -21.545 23.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.093 3.907 3 H 0.074 0.926 4 N -0.364 5.364 5 C -0.371 4.371 6 H 0.089 0.911 7 C -0.209 4.209 8 N -0.580 5.580 9 Si 0.739 3.261 10 H -0.217 1.217 11 H -0.218 1.218 12 H -0.207 1.207 13 C -0.053 4.053 14 C -0.140 4.140 15 C -0.121 4.121 16 C -0.133 4.133 17 C 0.044 3.956 18 N -0.373 5.373 19 C 0.296 3.704 20 O -0.422 6.422 21 C -0.196 4.196 22 C 0.041 3.959 23 H 0.109 0.891 24 C -0.168 4.168 25 C -0.197 4.197 26 C 0.302 3.698 27 O -0.416 6.416 28 N -0.375 5.375 29 C -0.117 4.117 30 C -0.124 4.124 31 H 0.076 0.924 32 H 0.057 0.943 33 H 0.067 0.933 34 H 0.220 0.780 35 H 0.066 0.934 36 H 0.139 0.861 37 H 0.135 0.865 38 H 0.091 0.909 39 H 0.092 0.908 40 H 0.240 0.760 41 H 0.122 0.878 42 H 0.130 0.870 43 H 0.105 0.895 44 H 0.112 0.888 45 H 0.120 0.880 46 H 0.123 0.877 47 H 0.254 0.746 48 H 0.136 0.864 49 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 9.399 -1.081 -22.187 24.120 hybrid contribution -0.123 0.356 1.593 1.637 sum 9.276 -0.725 -20.594 22.598 Atomic orbital electron populations 1.22423 0.98201 1.01189 1.00188 1.19260 0.92180 0.95013 0.84208 0.92589 1.42519 1.78226 1.10705 1.04908 1.19239 1.36742 0.94017 0.87124 0.91056 1.24746 1.01992 0.96015 0.98115 1.69652 1.50725 1.08683 1.28971 0.86183 0.77339 0.78794 0.83819 1.21682 1.21758 1.20737 1.20545 0.95106 0.94050 0.95624 1.21023 1.00006 0.99829 0.93144 1.20914 0.99686 0.93468 0.98015 1.19635 1.04160 0.93851 0.95644 1.20145 0.79820 1.00017 0.95600 1.46201 1.09268 1.59799 1.22055 1.20639 0.89622 0.77409 0.82756 1.90730 1.70176 1.50555 1.30712 1.22129 0.93150 1.03738 1.00537 1.21423 0.93522 0.83015 0.97925 0.89070 1.22728 0.93908 0.97388 1.02802 1.22352 0.97230 0.96355 1.03740 1.20909 0.87004 0.86447 0.75465 1.90766 1.84387 1.13907 1.52584 1.46350 1.13354 1.07592 1.70170 1.21017 0.98393 0.99473 0.92857 1.21098 0.99086 0.94452 0.97746 0.92351 0.94307 0.93310 0.78011 0.93436 0.86095 0.86505 0.90857 0.90839 0.76023 0.87803 0.86966 0.89468 0.88755 0.87953 0.87719 0.74605 0.86366 0.85355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.78 9.47 37.16 0.35 -2.43 16 2 C 0.20 3.86 3.09 -69.09 -0.21 3.65 16 3 H 0.06 1.07 7.94 -51.93 -0.41 0.66 16 4 N -0.72 -17.26 5.07 -54.55 -0.28 -17.54 16 5 C -0.24 -6.42 9.93 -15.06 -0.15 -6.57 16 6 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 7 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 8 N -0.93 -27.30 13.06 55.49 0.72 -26.58 16 9 Si 0.91 21.78 29.55 -169.99 -5.02 16.76 16 10 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 12 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 13 C -0.05 -0.85 4.95 -104.62 -0.52 -1.37 16 14 C -0.12 -1.66 9.67 -39.58 -0.38 -2.04 16 15 C -0.10 -1.19 9.70 -39.59 -0.38 -1.57 16 16 C -0.13 -1.51 5.25 -104.63 -0.55 -2.06 16 17 C 0.17 1.64 5.80 -5.20 -0.03 1.61 16 18 N -0.72 -5.99 5.55 -61.47 -0.34 -6.33 16 19 C 0.51 4.34 7.66 -10.99 -0.08 4.25 16 20 O -0.54 -6.50 15.03 5.55 0.08 -6.41 16 21 C -0.15 -0.76 5.31 -27.88 -0.15 -0.91 16 22 C 0.15 0.83 2.99 -67.01 -0.20 0.63 16 23 H 0.09 0.57 7.91 -51.93 -0.41 0.16 16 24 C -0.13 -0.44 6.69 -25.10 -0.17 -0.60 16 25 C -0.16 -0.85 6.86 -26.74 -0.18 -1.04 16 26 C 0.52 5.18 8.43 -10.86 -0.09 5.09 16 27 O -0.54 -7.97 18.03 5.55 0.10 -7.87 16 28 N -0.72 -6.21 5.63 -52.76 -0.30 -6.51 16 29 C -0.10 -1.29 9.70 -39.59 -0.38 -1.67 16 30 C -0.11 -1.67 9.06 -39.59 -0.36 -2.03 16 31 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 32 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.38 9.70 6.07 -40.82 -0.25 9.45 16 35 H 0.26 7.27 8.31 -40.82 -0.34 6.94 16 36 H 0.12 1.47 8.04 -52.49 -0.42 1.04 16 37 H 0.12 1.10 8.06 -52.48 -0.42 0.67 16 38 H 0.07 0.72 8.09 -51.93 -0.42 0.30 16 39 H 0.07 0.76 8.08 -51.92 -0.42 0.34 16 40 H 0.41 2.87 8.46 -40.82 -0.35 2.53 16 41 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.11 0.28 8.14 -51.93 -0.42 -0.14 16 43 H 0.09 0.22 7.91 -51.93 -0.41 -0.19 16 44 H 0.09 0.14 8.14 -51.93 -0.42 -0.28 16 45 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.41 4.10 8.12 -40.82 -0.33 3.77 16 48 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 49 H 0.13 2.22 6.92 -52.48 -0.36 1.86 16 LS Contribution 408.22 15.07 6.15 6.15 Total: -1.00 -34.33 408.22 -10.02 -44.36 By element: Atomic # 1 Polarization: 19.03 SS G_CDS: -7.56 Total: 11.47 kcal Atomic # 6 Polarization: -3.91 SS G_CDS: -3.59 Total: -7.50 kcal Atomic # 7 Polarization: -56.76 SS G_CDS: -0.19 Total: -56.95 kcal Atomic # 8 Polarization: -14.47 SS G_CDS: 0.18 Total: -14.29 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -34.33 -10.02 -44.36 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672943398.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.839 kcal (2) G-P(sol) polarization free energy of solvation -34.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds