Wall clock time and date at job start Wed Apr 1 2020 03:25:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.47274 * 2 1 4 4 N 1.46492 * 109.46988 * 120.00159 * 2 1 3 5 5 C 1.36942 * 120.00142 * 274.99635 * 4 2 1 6 6 H 1.08000 * 119.99545 * 0.02562 * 5 4 2 7 7 C 1.38810 * 119.99795 * 179.97438 * 5 4 2 8 8 N 1.31622 * 120.00536 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 119.99860 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47306 * 89.99761 * 9 7 5 11 11 H 1.48494 * 109.47315 * 210.00518 * 9 7 5 12 12 H 1.48509 * 109.47007 * 330.00183 * 9 7 5 13 13 C 1.50703 * 109.47181 * 240.00257 * 2 1 3 14 14 C 1.38238 * 119.99869 * 99.99529 * 13 2 1 15 15 C 1.38232 * 119.99501 * 179.97438 * 14 13 2 16 16 C 1.38233 * 120.00473 * 0.02562 * 15 14 13 17 17 C 1.50699 * 119.99932 * 179.97438 * 16 15 14 18 18 N 1.46496 * 109.47747 * 89.99905 * 17 16 15 19 19 C 1.34771 * 120.00225 * 180.02562 * 18 17 16 20 20 O 1.21284 * 119.99883 * 359.97438 * 19 18 17 21 21 C 1.50699 * 120.00318 * 179.97438 * 19 18 17 22 22 C 1.53002 * 109.47492 * 179.97438 * 21 19 18 23 23 H 1.08994 * 110.28196 * 53.02327 * 22 21 19 24 24 C 1.54479 * 110.24544 * 174.99871 * 22 21 19 25 25 C 1.54623 * 101.76448 * 144.41635 * 24 22 21 26 26 C 1.51286 * 104.19583 * 335.20040 * 25 24 22 27 27 O 1.21283 * 124.94068 * 196.22850 * 26 25 24 28 28 N 1.34417 * 110.11517 * 16.49747 * 26 25 24 29 29 C 1.38234 * 119.99729 * 0.24799 * 16 15 14 30 30 C 1.38231 * 120.00061 * 279.97778 * 13 2 1 31 31 H 1.09002 * 109.47201 * 300.00082 * 1 2 3 32 32 H 1.09003 * 109.47374 * 59.99647 * 1 2 3 33 33 H 1.08996 * 109.47518 * 179.97438 * 1 2 3 34 34 H 0.97007 * 120.00270 * 95.00607 * 4 2 1 35 35 H 0.96996 * 120.00384 * 179.97438 * 8 7 5 36 36 H 1.07994 * 120.00077 * 359.97438 * 14 13 2 37 37 H 1.08008 * 119.99760 * 179.97438 * 15 14 13 38 38 H 1.09000 * 109.47391 * 329.98923 * 17 16 15 39 39 H 1.09011 * 109.46764 * 210.00012 * 17 16 15 40 40 H 0.97001 * 119.99602 * 359.97438 * 18 17 16 41 41 H 1.09005 * 109.47263 * 59.99549 * 21 19 18 42 42 H 1.08998 * 109.46827 * 300.00134 * 21 19 18 43 43 H 1.09006 * 110.97141 * 26.29683 * 24 22 21 44 44 H 1.09002 * 110.97085 * 262.53716 * 24 22 21 45 45 H 1.09000 * 110.48720 * 216.52574 * 25 24 22 46 46 H 1.09003 * 110.60041 * 93.93250 * 25 24 22 47 47 H 0.96995 * 124.34982 * 180.16393 * 28 26 25 48 48 H 1.07997 * 119.99962 * 179.72915 * 29 16 15 49 49 H 1.08005 * 119.99767 * 0.02562 * 30 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1491 -0.0075 2.3757 6 1 1.8919 1.0403 2.4243 7 6 2.6113 -0.6621 3.5092 8 7 2.9243 -1.9392 3.4501 9 14 2.7891 0.2695 5.1185 10 1 1.5211 0.1784 5.8860 11 1 3.8933 -0.3238 5.9146 12 1 3.0943 1.6949 4.8343 13 6 2.0323 -0.7104 -1.2305 14 6 2.4586 0.0196 -2.3243 15 6 2.9199 -0.6321 -3.4528 16 6 2.9544 -2.0135 -3.4877 17 6 3.4568 -2.7238 -4.7182 18 7 4.9020 -2.9350 -4.6045 19 6 5.5723 -3.5557 -5.5953 20 8 4.9790 -3.9398 -6.5809 21 6 7.0591 -3.7723 -5.4787 22 6 7.5690 -4.4936 -6.7280 23 1 7.2572 -3.9602 -7.6259 24 6 9.1085 -4.6137 -6.6850 25 6 9.3356 -5.9942 -7.3435 26 6 8.0390 -6.7365 -7.1055 27 8 7.8954 -7.9359 -7.2137 28 7 7.0680 -5.8726 -6.7626 29 6 2.5228 -2.7435 -2.3960 30 6 2.0672 -2.0918 -1.2653 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 2.2491 -1.6318 1.1525 35 1 3.2475 -2.3965 4.2421 36 1 2.4313 1.0988 -2.2972 37 1 3.2526 -0.0618 -4.3076 38 1 3.2463 -2.1175 -5.5992 39 1 2.9551 -3.6871 -4.8119 40 1 5.3765 -2.6274 -3.8164 41 1 7.2699 -4.3789 -4.5979 42 1 7.5603 -2.8090 -5.3848 43 1 9.4718 -4.6073 -5.6572 44 1 9.5781 -3.8214 -7.2680 45 1 10.1658 -6.5134 -6.8646 46 1 9.5213 -5.8836 -8.4118 47 1 6.1541 -6.1281 -6.5614 48 1 2.5457 -3.8228 -2.4249 49 1 1.7340 -2.6620 -0.4107 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672943398.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:25:24 Heat of formation + Delta-G solvation = -72.650972 kcal Electronic energy + Delta-G solvation = -28666.550397 eV Core-core repulsion = 24591.864713 eV Total energy + Delta-G solvation = -4074.685684 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.56591 -40.77494 -40.12698 -37.72192 -37.32812 -35.71143 -34.12211 -32.48305 -32.12271 -31.86380 -31.37503 -29.99288 -27.48886 -26.08832 -25.50221 -23.79486 -22.98495 -22.31402 -21.62250 -21.28153 -21.03571 -19.39088 -18.37572 -18.21176 -17.47992 -17.29189 -16.96408 -16.61752 -16.37919 -15.99931 -15.80959 -15.67234 -15.11370 -15.06162 -14.78238 -14.75063 -14.44857 -14.30217 -14.23517 -13.80754 -13.74505 -13.49977 -13.41486 -13.39009 -13.04191 -12.83522 -12.71877 -12.64740 -12.43666 -12.31761 -12.13010 -12.00567 -11.90268 -11.60239 -11.53686 -11.01425 -10.95879 -10.92522 -10.12901 -10.08327 -9.78669 -9.53068 -9.02381 -7.94121 -5.22430 0.32171 0.53710 1.47802 1.49017 1.57217 1.57945 1.65620 2.26161 2.44877 2.56305 2.94291 3.40241 3.42542 3.54350 3.67660 3.84193 3.87926 3.93957 3.99405 4.05172 4.15930 4.25594 4.35819 4.40963 4.45715 4.54300 4.60206 4.65209 4.73689 4.77102 4.80667 4.88342 4.91751 5.00568 5.06972 5.12496 5.14081 5.22392 5.27332 5.40161 5.42287 5.50874 5.56128 5.64024 5.84683 5.85036 6.08233 6.10669 6.28192 6.55438 7.21339 7.25332 7.34424 8.09187 8.33105 9.29344 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.014085 B = 0.001804 C = 0.001678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1987.413155 B =15518.383441 C =16686.755038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.198 3.802 3 H 0.056 0.944 4 N -0.734 5.734 5 C -0.237 4.237 6 H 0.077 0.923 7 C -0.077 4.077 8 N -0.970 5.970 9 Si 0.971 3.029 10 H -0.290 1.290 11 H -0.297 1.297 12 H -0.268 1.268 13 C -0.074 4.074 14 C -0.121 4.121 15 C -0.091 4.091 16 C -0.114 4.114 17 C 0.172 3.828 18 N -0.717 5.717 19 C 0.507 3.493 20 O -0.582 6.582 21 C -0.146 4.146 22 C 0.141 3.859 23 H 0.087 0.913 24 C -0.116 4.116 25 C -0.150 4.150 26 C 0.501 3.499 27 O -0.601 6.601 28 N -0.721 5.721 29 C -0.100 4.100 30 C -0.125 4.125 31 H 0.042 0.958 32 H 0.069 0.931 33 H 0.038 0.962 34 H 0.374 0.626 35 H 0.250 0.750 36 H 0.138 0.862 37 H 0.150 0.850 38 H 0.080 0.920 39 H 0.066 0.934 40 H 0.413 0.587 41 H 0.113 0.887 42 H 0.148 0.852 43 H 0.102 0.898 44 H 0.124 0.876 45 H 0.111 0.889 46 H 0.118 0.882 47 H 0.403 0.597 48 H 0.128 0.872 49 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.486 2.155 -23.153 25.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.090 3.910 3 H 0.074 0.926 4 N -0.375 5.375 5 C -0.369 4.369 6 H 0.095 0.905 7 C -0.269 4.269 8 N -0.621 5.621 9 Si 0.801 3.199 10 H -0.217 1.217 11 H -0.224 1.224 12 H -0.193 1.193 13 C -0.075 4.075 14 C -0.139 4.139 15 C -0.110 4.110 16 C -0.115 4.115 17 C 0.049 3.951 18 N -0.369 5.369 19 C 0.295 3.705 20 O -0.462 6.462 21 C -0.186 4.186 22 C 0.036 3.964 23 H 0.105 0.895 24 C -0.153 4.153 25 C -0.190 4.190 26 C 0.289 3.711 27 O -0.483 6.483 28 N -0.373 5.373 29 C -0.119 4.119 30 C -0.143 4.143 31 H 0.061 0.939 32 H 0.088 0.912 33 H 0.057 0.943 34 H 0.208 0.792 35 H 0.059 0.941 36 H 0.156 0.844 37 H 0.167 0.833 38 H 0.098 0.902 39 H 0.084 0.916 40 H 0.249 0.751 41 H 0.132 0.868 42 H 0.166 0.834 43 H 0.121 0.879 44 H 0.142 0.858 45 H 0.129 0.871 46 H 0.136 0.864 47 H 0.241 0.759 48 H 0.146 0.854 49 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 11.104 1.493 -23.810 26.314 hybrid contribution -0.731 -0.391 1.937 2.107 sum 10.373 1.102 -21.873 24.233 Atomic orbital electron populations 1.22269 0.97004 1.00790 1.00905 1.19426 0.92900 0.94801 0.83841 0.92574 1.42721 1.78454 1.10445 1.05919 1.19634 1.34781 0.94318 0.88175 0.90465 1.25532 1.03056 0.96909 1.01388 1.69812 1.52692 1.10208 1.29356 0.85169 0.76759 0.78148 0.79870 1.21711 1.22376 1.19281 1.20317 0.97434 0.94141 0.95633 1.21208 0.99313 1.00683 0.92728 1.21222 0.98090 0.93511 0.98131 1.19763 1.02450 0.94004 0.95282 1.20020 0.80821 0.99547 0.94748 1.46129 1.08575 1.59734 1.22447 1.21272 0.91018 0.76311 0.81893 1.90724 1.71248 1.52008 1.32238 1.22175 0.90444 1.05586 1.00381 1.21674 0.95288 0.81192 0.98242 0.89458 1.22793 0.91791 0.96645 1.04084 1.22402 0.94591 0.96994 1.05003 1.21803 0.88883 0.85953 0.74430 1.90720 1.85620 1.16594 1.55347 1.46594 1.12750 1.09008 1.68975 1.21107 0.98131 1.00147 0.92504 1.20960 1.00813 0.94515 0.98056 0.93880 0.91194 0.94267 0.79245 0.94121 0.84377 0.83266 0.90197 0.91605 0.75062 0.86840 0.83397 0.87942 0.85798 0.87057 0.86368 0.75914 0.85395 0.88097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.19 9.47 71.98 0.68 -4.51 16 2 C 0.20 7.55 3.09 44.25 0.14 7.69 16 3 H 0.06 2.11 7.94 -2.38 -0.02 2.09 16 4 N -0.73 -35.99 5.07 -326.50 -1.66 -37.65 16 5 C -0.24 -12.83 9.93 84.03 0.83 -11.99 16 6 H 0.08 3.99 7.83 -2.91 -0.02 3.96 16 7 C -0.08 -4.33 5.50 84.86 0.47 -3.86 16 8 N -0.97 -58.45 13.06 21.65 0.28 -58.17 16 9 Si 0.97 45.30 29.55 68.60 2.03 47.33 16 10 H -0.29 -13.39 7.11 99.48 0.71 -12.69 16 11 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 12 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 13 C -0.07 -2.38 4.95 -19.87 -0.10 -2.48 16 14 C -0.12 -3.01 9.67 22.27 0.22 -2.79 16 15 C -0.09 -1.81 9.70 22.27 0.22 -1.59 16 16 C -0.11 -2.34 5.25 -19.87 -0.10 -2.44 16 17 C 0.17 2.97 5.80 85.63 0.50 3.47 16 18 N -0.72 -10.03 5.55 -466.79 -2.59 -12.62 16 19 C 0.51 7.50 7.66 87.66 0.67 8.17 16 20 O -0.58 -13.22 15.03 -3.04 -0.05 -13.26 16 21 C -0.15 -0.96 5.31 29.85 0.16 -0.80 16 22 C 0.14 1.24 2.99 45.44 0.14 1.38 16 23 H 0.09 0.88 7.91 -2.39 -0.02 0.86 16 24 C -0.12 -0.33 6.69 31.65 0.21 -0.11 16 25 C -0.15 -1.32 6.86 30.59 0.21 -1.11 16 26 C 0.50 10.06 8.43 87.90 0.74 10.80 16 27 O -0.60 -18.68 18.03 -3.04 -0.05 -18.74 16 28 N -0.72 -12.11 5.63 -439.44 -2.47 -14.59 16 29 C -0.10 -2.55 9.70 22.27 0.22 -2.34 16 30 C -0.12 -4.03 9.06 22.27 0.20 -3.83 16 31 H 0.04 1.58 8.14 -2.39 -0.02 1.57 16 32 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.37 19.72 6.07 -92.70 -0.56 19.15 16 35 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 36 H 0.14 2.92 8.04 -2.91 -0.02 2.89 16 37 H 0.15 2.06 8.06 -2.91 -0.02 2.04 16 38 H 0.08 1.33 8.09 -2.39 -0.02 1.32 16 39 H 0.07 1.28 8.08 -2.38 -0.02 1.26 16 40 H 0.41 4.59 8.46 -92.71 -0.78 3.80 16 41 H 0.11 0.62 8.14 -2.38 -0.02 0.60 16 42 H 0.15 -0.02 8.14 -2.39 -0.02 -0.04 16 43 H 0.10 0.04 7.91 -2.38 -0.02 0.03 16 44 H 0.12 -0.28 8.14 -2.39 -0.02 -0.30 16 45 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 46 H 0.12 0.74 8.14 -2.39 -0.02 0.72 16 47 H 0.40 8.22 8.12 -92.71 -0.75 7.47 16 48 H 0.13 2.93 8.06 -2.91 -0.02 2.90 16 49 H 0.10 3.75 6.92 -2.91 -0.02 3.73 16 Total: -1.00 -78.79 408.22 -0.23 -79.02 By element: Atomic # 1 Polarization: 36.15 SS G_CDS: -1.11 Total: 35.04 kcal Atomic # 6 Polarization: -11.75 SS G_CDS: 5.39 Total: -6.36 kcal Atomic # 7 Polarization: -116.59 SS G_CDS: -6.44 Total: -123.02 kcal Atomic # 8 Polarization: -31.90 SS G_CDS: -0.10 Total: -32.00 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Total: -78.79 -0.23 -79.02 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672943398.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.372 kcal (2) G-P(sol) polarization free energy of solvation -78.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds