Wall clock time and date at job start Wed Apr 1 2020 04:50:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.47421 * 2 1 4 4 C 1.52999 * 109.46981 * 240.00093 * 2 1 3 5 5 C 1.50699 * 109.47059 * 65.00132 * 4 2 1 6 6 N 1.34785 * 119.99726 * 180.02562 * 5 4 2 7 7 O 1.21279 * 120.00180 * 359.97438 * 5 4 2 8 8 C 1.50699 * 109.47219 * 119.99810 * 2 1 3 9 9 O 1.21284 * 119.99480 * 119.99907 * 8 2 1 10 10 N 1.34774 * 120.00496 * 299.99949 * 8 2 1 11 11 C 1.46492 * 120.00502 * 179.97438 * 10 8 2 12 12 C 1.50701 * 109.47468 * 180.02562 * 11 10 8 13 13 C 1.37953 * 119.70962 * 260.00064 * 12 11 10 14 14 C 1.38218 * 119.82998 * 180.02562 * 13 12 11 15 15 C 1.38009 * 119.71253 * 0.26268 * 14 13 12 16 16 C 1.38780 * 120.50857 * 359.83548 * 15 14 13 17 17 C 1.37720 * 119.84533 * 359.44833 * 16 15 14 18 18 C 1.50592 * 122.84786 * 181.01754 * 17 16 15 19 19 C 1.52802 * 110.92404 * 340.15241 * 18 17 16 20 20 N 1.47221 * 107.90397 * 47.32076 * 19 18 17 21 21 C 1.36943 * 121.32456 * 115.78407 * 20 19 18 22 22 H 1.07999 * 119.99826 * 335.40647 * 21 20 19 23 23 C 1.38810 * 120.00015 * 155.41442 * 21 20 19 24 24 N 1.31621 * 119.99975 * 344.25957 * 23 21 20 25 25 Si 1.86800 * 119.99989 * 164.26592 * 23 21 20 26 26 H 1.48500 * 109.47023 * 89.99539 * 25 23 21 27 27 H 1.48499 * 109.47102 * 209.99410 * 25 23 21 28 28 H 1.48495 * 109.47228 * 329.99649 * 25 23 21 29 29 C 1.46683 * 117.35184 * 295.79915 * 20 19 18 30 30 H 1.08997 * 109.47184 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.47083 * 300.00185 * 1 2 3 32 32 H 1.08998 * 109.47014 * 59.99831 * 1 2 3 33 33 H 1.09001 * 109.46787 * 304.99695 * 4 2 1 34 34 H 1.09001 * 109.47367 * 184.99881 * 4 2 1 35 35 H 0.96994 * 119.99586 * 180.02562 * 6 5 4 36 36 H 0.97000 * 119.99999 * 359.71955 * 6 5 4 37 37 H 0.97001 * 119.99299 * 0.02562 * 10 8 2 38 38 H 1.09005 * 109.46891 * 299.99953 * 11 10 8 39 39 H 1.08994 * 109.47197 * 59.99894 * 11 10 8 40 40 H 1.07997 * 120.08498 * 0.09849 * 13 12 11 41 41 H 1.08001 * 120.14235 * 180.28353 * 14 13 12 42 42 H 1.08008 * 119.74292 * 179.86351 * 15 14 13 43 43 H 1.09004 * 109.34132 * 219.66981 * 18 17 16 44 44 H 1.08999 * 108.95483 * 100.39162 * 18 17 16 45 45 H 1.08992 * 109.76889 * 287.71978 * 19 18 17 46 46 H 1.08993 * 109.77054 * 166.92126 * 19 18 17 47 47 H 0.97001 * 119.99916 * 180.02562 * 24 23 21 48 48 H 1.09001 * 109.43309 * 284.33324 * 29 20 19 49 49 H 1.08993 * 109.44095 * 164.46442 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6413 0.0571 -2.4766 6 7 1.9844 -0.3919 -3.7002 7 8 1.0109 1.0870 -2.3633 8 6 2.0324 -0.7104 1.2305 9 8 2.7296 -1.6965 1.1191 10 7 1.7068 -0.2499 2.4546 11 6 2.1947 -0.9408 3.6507 12 6 1.6920 -0.2307 4.8812 13 6 2.5255 0.6340 5.5601 14 6 2.0672 1.2861 6.6892 15 6 0.7795 1.0630 7.1328 16 6 -0.0592 0.1919 6.4518 17 6 0.3911 -0.4474 5.3182 18 6 -0.4679 -1.3881 4.5151 19 6 -1.6423 -1.9001 5.3478 20 7 -2.2617 -0.7436 6.0159 21 6 -3.5452 -0.3604 5.7315 22 1 -3.9854 -0.6128 4.7781 23 6 -4.2804 0.3527 6.6684 24 7 -3.8826 0.3964 7.9223 25 14 -5.8345 1.2501 6.1497 26 1 -7.0011 0.3422 6.2917 27 1 -6.0281 2.4435 7.0119 28 1 -5.7097 1.6778 4.7331 29 6 -1.4491 -0.0180 6.9982 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.6053 -1.7198 -1.2951 34 1 3.1263 -0.7995 -1.2057 35 1 1.7281 0.1093 -4.4901 36 1 2.4915 -1.2139 -3.7906 37 1 1.1489 0.5385 2.5435 38 1 1.8309 -1.9683 3.6506 39 1 3.2847 -0.9413 3.6509 40 1 3.5331 0.8017 5.2094 41 1 2.7139 1.9676 7.2219 42 1 0.4216 1.5707 8.0163 43 1 0.1343 -2.2350 4.1860 44 1 -0.8509 -0.8598 3.6420 45 1 -1.2837 -2.6088 6.0942 46 1 -2.3712 -2.3847 4.6983 47 1 -4.3966 0.8944 8.5771 48 1 -1.3929 -0.5963 7.9204 49 1 -1.9075 0.9491 7.2047 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001673079580.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:50:47 Heat of formation + Delta-G solvation = -42.763807 kcal Electronic energy + Delta-G solvation = -30414.839313 eV Core-core repulsion = 26341.449634 eV Total energy + Delta-G solvation = -4073.389679 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -40.48457 -39.74345 -39.04844 -36.01542 -34.97531 -34.35818 -33.99751 -32.73047 -31.62808 -30.14076 -28.92682 -28.03596 -26.10515 -25.56417 -23.80079 -23.15689 -22.13134 -20.99552 -20.51729 -19.79478 -19.01280 -17.86227 -17.50210 -16.79790 -16.32077 -16.12471 -15.90267 -15.63005 -15.32275 -14.86731 -14.76417 -14.32464 -14.22486 -13.69028 -13.60441 -13.47249 -13.16852 -12.97898 -12.88649 -12.57303 -12.54947 -12.29838 -12.12769 -11.95850 -11.53809 -11.42044 -11.28389 -11.26210 -10.95791 -10.86848 -10.72200 -10.39120 -10.22235 -10.16352 -10.04580 -9.91339 -9.79482 -9.73886 -9.03657 -8.69806 -8.27406 -7.89280 -6.80101 -5.85718 -3.25208 1.60491 1.86422 2.33709 2.60086 3.01768 3.35055 3.42351 3.44629 3.47429 4.20565 4.33452 4.44737 4.66085 4.74028 4.82785 4.95254 5.13492 5.21241 5.25576 5.31001 5.40209 5.41681 5.44422 5.51127 5.53571 5.73114 5.76282 5.82797 5.88235 5.98156 6.10189 6.12830 6.17345 6.21297 6.39627 6.44620 6.47291 6.53854 6.64428 6.82460 6.84141 6.93748 6.96029 7.09744 7.19660 7.43748 7.48810 7.59690 7.73516 7.93936 8.17088 8.32673 9.13461 9.75932 10.33768 11.24818 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010331 B = 0.002980 C = 0.002498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2709.527390 B = 9393.192996 C =11204.166370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.094 4.094 3 H 0.104 0.896 4 C -0.124 4.124 5 C 0.518 3.482 6 N -0.858 5.858 7 O -0.539 6.539 8 C 0.518 3.482 9 O -0.550 6.550 10 N -0.717 5.717 11 C 0.166 3.834 12 C -0.125 4.125 13 C -0.118 4.118 14 C -0.132 4.132 15 C -0.113 4.113 16 C -0.077 4.077 17 C -0.045 4.045 18 C -0.099 4.099 19 C 0.142 3.858 20 N -0.593 5.593 21 C -0.248 4.248 22 H 0.069 0.931 23 C 0.001 3.999 24 N -0.908 5.908 25 Si 0.904 3.096 26 H -0.287 1.287 27 H -0.289 1.289 28 H -0.279 1.279 29 C 0.205 3.795 30 H 0.057 0.943 31 H 0.064 0.936 32 H 0.085 0.915 33 H 0.102 0.898 34 H 0.102 0.898 35 H 0.400 0.600 36 H 0.402 0.598 37 H 0.405 0.595 38 H 0.077 0.923 39 H 0.069 0.931 40 H 0.113 0.887 41 H 0.115 0.885 42 H 0.119 0.881 43 H 0.062 0.938 44 H 0.070 0.930 45 H 0.026 0.974 46 H 0.060 0.940 47 H 0.255 0.745 48 H 0.041 0.959 49 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.017 -1.423 -15.274 21.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.116 4.116 3 H 0.122 0.878 4 C -0.164 4.164 5 C 0.303 3.697 6 N -0.422 5.422 7 O -0.416 6.416 8 C 0.305 3.695 9 O -0.428 6.428 10 N -0.368 5.368 11 C 0.043 3.957 12 C -0.126 4.126 13 C -0.137 4.137 14 C -0.150 4.150 15 C -0.132 4.132 16 C -0.079 4.079 17 C -0.046 4.046 18 C -0.138 4.138 19 C 0.015 3.985 20 N -0.315 5.315 21 C -0.377 4.377 22 H 0.087 0.913 23 C -0.197 4.197 24 N -0.553 5.553 25 Si 0.734 3.266 26 H -0.214 1.214 27 H -0.215 1.215 28 H -0.204 1.204 29 C 0.079 3.921 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.103 0.897 33 H 0.120 0.880 34 H 0.121 0.879 35 H 0.231 0.769 36 H 0.230 0.770 37 H 0.239 0.761 38 H 0.095 0.905 39 H 0.087 0.913 40 H 0.131 0.869 41 H 0.133 0.867 42 H 0.137 0.863 43 H 0.080 0.920 44 H 0.088 0.912 45 H 0.044 0.956 46 H 0.079 0.921 47 H 0.065 0.935 48 H 0.058 0.942 49 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 14.987 -1.423 -14.929 21.202 hybrid contribution -0.784 0.729 -0.379 1.136 sum 14.203 -0.694 -15.308 20.894 Atomic orbital electron populations 1.21929 0.91946 1.02717 1.04326 1.21003 0.98592 1.00819 0.91185 0.87766 1.21455 1.03811 1.00177 0.90964 1.20720 0.78330 0.85342 0.85300 1.43897 1.60206 1.29760 1.08319 1.90737 1.39525 1.24631 1.86712 1.20571 0.79856 0.84427 0.84696 1.90678 1.38591 1.26544 1.87012 1.46095 1.53372 1.32145 1.05159 1.20159 0.98384 0.95952 0.81204 1.19798 0.94785 1.00443 0.97547 1.20751 0.98988 0.97504 0.96423 1.20937 0.96098 1.00687 0.97270 1.21195 0.93606 0.98403 0.99985 1.21039 0.98994 0.94078 0.93764 1.19443 0.92649 0.97317 0.95216 1.21043 0.97260 0.96975 0.98504 1.20909 0.93025 0.89964 0.94579 1.43991 1.11391 1.28916 1.47176 1.19157 0.88739 1.31764 0.98070 0.91298 1.25005 0.98023 1.01979 0.94712 1.70000 1.40550 1.44151 1.00615 0.86267 0.83055 0.79387 0.77921 1.21362 1.21526 1.20446 1.19768 0.83176 0.98822 0.90296 0.92401 0.91742 0.89656 0.87959 0.87942 0.76909 0.76960 0.76055 0.90459 0.91271 0.86886 0.86679 0.86264 0.91950 0.91175 0.95601 0.92127 0.93510 0.94166 0.88533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 8.83 37.16 0.33 -1.29 16 2 C -0.09 -0.96 2.37 -91.77 -0.22 -1.18 16 3 H 0.10 1.04 7.96 -51.93 -0.41 0.63 16 4 C -0.12 -1.05 4.52 -27.88 -0.13 -1.17 16 5 C 0.52 4.60 7.82 -10.98 -0.09 4.52 16 6 N -0.86 -4.40 8.87 31.22 0.28 -4.12 16 7 O -0.54 -6.88 14.80 5.56 0.08 -6.80 16 8 C 0.52 6.36 7.15 -10.99 -0.08 6.28 16 9 O -0.55 -8.20 15.92 5.55 0.09 -8.11 16 10 N -0.72 -8.68 5.41 -61.48 -0.33 -9.01 16 11 C 0.17 2.17 5.10 -5.20 -0.03 2.14 16 12 C -0.13 -1.85 5.26 -104.47 -0.55 -2.39 16 13 C -0.12 -1.63 9.65 -39.69 -0.38 -2.01 16 14 C -0.13 -1.90 10.05 -39.67 -0.40 -2.30 16 15 C -0.11 -1.92 9.62 -39.46 -0.38 -2.30 16 16 C -0.08 -1.50 5.82 -104.56 -0.61 -2.11 16 17 C -0.05 -0.80 5.76 -104.61 -0.60 -1.40 16 18 C -0.10 -1.71 5.24 -28.04 -0.15 -1.85 16 19 C 0.14 2.90 6.52 -3.75 -0.02 2.87 16 20 N -0.59 -14.49 2.97 -173.94 -0.52 -15.01 16 21 C -0.25 -6.64 9.69 -15.06 -0.15 -6.78 16 22 H 0.07 1.80 7.88 -52.49 -0.41 1.39 16 23 C 0.00 0.02 4.99 -17.43 -0.09 -0.06 16 24 N -0.91 -25.65 11.10 55.49 0.62 -25.04 16 25 Si 0.90 21.37 29.58 -169.99 -5.03 16.34 16 26 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 27 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 28 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 29 C 0.20 4.79 4.85 -5.04 -0.02 4.77 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.70 7.56 -51.92 -0.39 0.30 16 32 H 0.08 0.99 5.95 -51.93 -0.31 0.68 16 33 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.10 0.79 7.96 -51.93 -0.41 0.38 16 35 H 0.40 1.74 8.93 -40.82 -0.36 1.37 16 36 H 0.40 0.95 8.83 -40.82 -0.36 0.59 16 37 H 0.40 4.70 7.88 -40.82 -0.32 4.38 16 38 H 0.08 1.07 6.34 -51.93 -0.33 0.74 16 39 H 0.07 0.87 7.99 -51.93 -0.41 0.46 16 40 H 0.11 1.30 8.03 -52.49 -0.42 0.88 16 41 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 42 H 0.12 1.91 8.05 -52.48 -0.42 1.49 16 43 H 0.06 0.96 6.25 -51.93 -0.32 0.63 16 44 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 45 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.06 1.20 7.96 -51.93 -0.41 0.78 16 47 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 48 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 49 H 0.10 2.50 6.34 -51.93 -0.33 2.18 16 LS Contribution 394.22 15.07 5.94 5.94 Total: -1.00 -32.76 394.22 -9.75 -42.51 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: -7.31 Total: 7.57 kcal Atomic # 6 Polarization: -0.71 SS G_CDS: -3.56 Total: -4.27 kcal Atomic # 7 Polarization: -53.22 SS G_CDS: 0.04 Total: -53.18 kcal Atomic # 8 Polarization: -15.08 SS G_CDS: 0.17 Total: -14.91 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.03 Total: 16.34 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -32.76 -9.75 -42.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673079580.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.258 kcal (2) G-P(sol) polarization free energy of solvation -32.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds