Wall clock time and date at job start Wed Apr 1 2020 04:50:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.47421 * 2 1 4 4 C 1.52999 * 109.46981 * 240.00093 * 2 1 3 5 5 C 1.50699 * 109.47059 * 65.00132 * 4 2 1 6 6 N 1.34785 * 119.99726 * 180.02562 * 5 4 2 7 7 O 1.21279 * 120.00180 * 359.97438 * 5 4 2 8 8 C 1.50699 * 109.47219 * 119.99810 * 2 1 3 9 9 O 1.21284 * 119.99480 * 119.99907 * 8 2 1 10 10 N 1.34774 * 120.00496 * 299.99949 * 8 2 1 11 11 C 1.46492 * 120.00502 * 179.97438 * 10 8 2 12 12 C 1.50701 * 109.47468 * 180.02562 * 11 10 8 13 13 C 1.37953 * 119.70962 * 260.00064 * 12 11 10 14 14 C 1.38218 * 119.82998 * 180.02562 * 13 12 11 15 15 C 1.38009 * 119.71253 * 0.26268 * 14 13 12 16 16 C 1.38780 * 120.50857 * 359.83548 * 15 14 13 17 17 C 1.37720 * 119.84533 * 359.44833 * 16 15 14 18 18 C 1.50592 * 122.84786 * 181.01754 * 17 16 15 19 19 C 1.52802 * 110.92404 * 340.15241 * 18 17 16 20 20 N 1.47221 * 107.90397 * 47.32076 * 19 18 17 21 21 C 1.36943 * 121.32456 * 115.78407 * 20 19 18 22 22 H 1.07999 * 119.99826 * 335.40647 * 21 20 19 23 23 C 1.38810 * 120.00015 * 155.41442 * 21 20 19 24 24 N 1.31621 * 119.99975 * 344.25957 * 23 21 20 25 25 Si 1.86800 * 119.99989 * 164.26592 * 23 21 20 26 26 H 1.48500 * 109.47023 * 89.99539 * 25 23 21 27 27 H 1.48499 * 109.47102 * 209.99410 * 25 23 21 28 28 H 1.48495 * 109.47228 * 329.99649 * 25 23 21 29 29 C 1.46683 * 117.35184 * 295.79915 * 20 19 18 30 30 H 1.08997 * 109.47184 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.47083 * 300.00185 * 1 2 3 32 32 H 1.08998 * 109.47014 * 59.99831 * 1 2 3 33 33 H 1.09001 * 109.46787 * 304.99695 * 4 2 1 34 34 H 1.09001 * 109.47367 * 184.99881 * 4 2 1 35 35 H 0.96994 * 119.99586 * 180.02562 * 6 5 4 36 36 H 0.97000 * 119.99999 * 359.71955 * 6 5 4 37 37 H 0.97001 * 119.99299 * 0.02562 * 10 8 2 38 38 H 1.09005 * 109.46891 * 299.99953 * 11 10 8 39 39 H 1.08994 * 109.47197 * 59.99894 * 11 10 8 40 40 H 1.07997 * 120.08498 * 0.09849 * 13 12 11 41 41 H 1.08001 * 120.14235 * 180.28353 * 14 13 12 42 42 H 1.08008 * 119.74292 * 179.86351 * 15 14 13 43 43 H 1.09004 * 109.34132 * 219.66981 * 18 17 16 44 44 H 1.08999 * 108.95483 * 100.39162 * 18 17 16 45 45 H 1.08992 * 109.76889 * 287.71978 * 19 18 17 46 46 H 1.08993 * 109.77054 * 166.92126 * 19 18 17 47 47 H 0.97001 * 119.99916 * 180.02562 * 24 23 21 48 48 H 1.09001 * 109.43309 * 284.33324 * 29 20 19 49 49 H 1.08993 * 109.44095 * 164.46442 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6413 0.0571 -2.4766 6 7 1.9844 -0.3919 -3.7002 7 8 1.0109 1.0870 -2.3633 8 6 2.0324 -0.7104 1.2305 9 8 2.7296 -1.6965 1.1191 10 7 1.7068 -0.2499 2.4546 11 6 2.1947 -0.9408 3.6507 12 6 1.6920 -0.2307 4.8812 13 6 2.5255 0.6340 5.5601 14 6 2.0672 1.2861 6.6892 15 6 0.7795 1.0630 7.1328 16 6 -0.0592 0.1919 6.4518 17 6 0.3911 -0.4474 5.3182 18 6 -0.4679 -1.3881 4.5151 19 6 -1.6423 -1.9001 5.3478 20 7 -2.2617 -0.7436 6.0159 21 6 -3.5452 -0.3604 5.7315 22 1 -3.9854 -0.6128 4.7781 23 6 -4.2804 0.3527 6.6684 24 7 -3.8826 0.3964 7.9223 25 14 -5.8345 1.2501 6.1497 26 1 -7.0011 0.3422 6.2917 27 1 -6.0281 2.4435 7.0119 28 1 -5.7097 1.6778 4.7331 29 6 -1.4491 -0.0180 6.9982 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.6053 -1.7198 -1.2951 34 1 3.1263 -0.7995 -1.2057 35 1 1.7281 0.1093 -4.4901 36 1 2.4915 -1.2139 -3.7906 37 1 1.1489 0.5385 2.5435 38 1 1.8309 -1.9683 3.6506 39 1 3.2847 -0.9413 3.6509 40 1 3.5331 0.8017 5.2094 41 1 2.7139 1.9676 7.2219 42 1 0.4216 1.5707 8.0163 43 1 0.1343 -2.2350 4.1860 44 1 -0.8509 -0.8598 3.6420 45 1 -1.2837 -2.6088 6.0942 46 1 -2.3712 -2.3847 4.6983 47 1 -4.3966 0.8944 8.5771 48 1 -1.3929 -0.5963 7.9204 49 1 -1.9075 0.9491 7.2047 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001673079580.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:50:46 Heat of formation + Delta-G solvation = -65.508330 kcal Electronic energy + Delta-G solvation = -30415.825590 eV Core-core repulsion = 26341.449634 eV Total energy + Delta-G solvation = -4074.375956 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.44547 -40.84257 -40.02230 -37.65599 -36.09223 -35.20010 -34.61307 -34.44271 -33.00113 -31.76849 -30.37025 -28.84185 -27.45039 -27.15449 -24.84611 -24.63642 -23.74709 -21.82803 -21.66154 -20.71141 -20.54669 -18.65421 -18.63065 -18.12824 -17.39332 -17.11003 -16.88411 -16.71684 -16.49289 -16.44323 -15.92410 -15.77120 -15.41683 -15.22325 -14.73297 -14.66264 -14.36418 -14.19670 -14.09257 -13.91593 -13.70244 -13.43145 -13.33025 -13.24200 -12.95867 -12.80443 -12.73525 -12.51241 -12.38752 -12.20279 -12.14585 -12.07036 -11.84727 -11.60609 -11.32463 -11.01506 -10.82582 -10.67385 -10.54765 -10.04705 -9.53698 -9.31212 -8.77593 -7.91299 -5.33584 0.36576 0.57562 1.45620 1.47338 1.56805 1.63812 1.67384 2.17762 2.49031 2.73754 2.99376 3.26128 3.57791 3.61860 3.70464 3.92911 3.94788 4.00249 4.04279 4.17399 4.21094 4.35245 4.40452 4.43818 4.57274 4.64644 4.68619 4.74219 4.76169 4.79500 4.83864 4.95037 5.00363 5.08202 5.13177 5.16474 5.18674 5.32851 5.39266 5.42141 5.46071 5.59112 5.64612 5.71408 5.95670 5.96027 6.17770 6.31469 6.48061 6.53916 7.10092 7.20731 7.39218 7.79133 8.34053 9.17571 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010331 B = 0.002980 C = 0.002498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2709.527390 B = 9393.192996 C =11204.166370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.089 4.089 3 H 0.107 0.893 4 C -0.119 4.119 5 C 0.517 3.483 6 N -0.839 5.839 7 O -0.583 6.583 8 C 0.523 3.477 9 O -0.574 6.574 10 N -0.714 5.714 11 C 0.171 3.829 12 C -0.115 4.115 13 C -0.104 4.104 14 C -0.122 4.122 15 C -0.124 4.124 16 C -0.109 4.109 17 C -0.058 4.058 18 C -0.085 4.085 19 C 0.137 3.863 20 N -0.611 5.611 21 C -0.258 4.258 22 H 0.072 0.928 23 C -0.052 4.052 24 N -0.939 5.939 25 Si 0.968 3.032 26 H -0.284 1.284 27 H -0.293 1.293 28 H -0.271 1.271 29 C 0.221 3.779 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.076 0.924 33 H 0.110 0.890 34 H 0.113 0.887 35 H 0.407 0.593 36 H 0.418 0.582 37 H 0.408 0.592 38 H 0.071 0.929 39 H 0.084 0.916 40 H 0.149 0.851 41 H 0.149 0.851 42 H 0.116 0.884 43 H 0.086 0.914 44 H 0.069 0.931 45 H 0.021 0.979 46 H 0.063 0.937 47 H 0.251 0.749 48 H 0.005 0.995 49 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.473 -1.298 -17.445 24.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.111 4.111 3 H 0.125 0.875 4 C -0.160 4.160 5 C 0.303 3.697 6 N -0.403 5.403 7 O -0.464 6.464 8 C 0.310 3.690 9 O -0.454 6.454 10 N -0.364 5.364 11 C 0.048 3.952 12 C -0.116 4.116 13 C -0.123 4.123 14 C -0.140 4.140 15 C -0.143 4.143 16 C -0.110 4.110 17 C -0.059 4.059 18 C -0.123 4.123 19 C 0.011 3.989 20 N -0.334 5.334 21 C -0.388 4.388 22 H 0.089 0.911 23 C -0.247 4.247 24 N -0.585 5.585 25 Si 0.795 3.205 26 H -0.211 1.211 27 H -0.219 1.219 28 H -0.195 1.195 29 C 0.095 3.905 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.094 0.906 33 H 0.128 0.872 34 H 0.132 0.868 35 H 0.238 0.762 36 H 0.249 0.751 37 H 0.243 0.757 38 H 0.089 0.911 39 H 0.102 0.898 40 H 0.167 0.833 41 H 0.167 0.833 42 H 0.135 0.865 43 H 0.104 0.896 44 H 0.088 0.912 45 H 0.040 0.960 46 H 0.081 0.919 47 H 0.060 0.940 48 H 0.022 0.978 49 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 17.477 -1.338 -17.149 24.522 hybrid contribution -1.445 0.628 0.264 1.597 sum 16.033 -0.710 -16.885 23.295 Atomic orbital electron populations 1.21858 0.92410 1.02471 1.03659 1.20963 0.98045 1.00983 0.91066 0.87460 1.21430 1.04431 1.00098 0.89995 1.20785 0.77865 0.84754 0.86295 1.43740 1.59058 1.30050 1.07436 1.90726 1.41741 1.26530 1.87371 1.20811 0.79217 0.83961 0.85004 1.90671 1.39772 1.27626 1.87314 1.46060 1.53259 1.32126 1.04985 1.20094 0.99087 0.95349 0.80657 1.19873 0.93432 1.00262 0.98009 1.21185 1.00191 0.95617 0.95271 1.21271 0.94955 1.00469 0.97266 1.21276 0.94782 0.98177 1.00041 1.20678 0.97247 0.97137 0.95947 1.19468 0.94055 0.97538 0.94789 1.20858 0.96109 0.97737 0.97610 1.21070 0.94213 0.88950 0.94625 1.44240 1.11194 1.30408 1.47511 1.19490 0.89787 1.31441 0.98066 0.91076 1.25760 1.01095 1.03081 0.94734 1.70170 1.41762 1.45075 1.01529 0.85272 0.79590 0.77906 0.77686 1.21061 1.21887 1.19541 1.19316 0.85531 0.96237 0.89367 0.92393 0.92151 0.90550 0.87226 0.86848 0.76166 0.75127 0.75661 0.91061 0.89827 0.83285 0.83325 0.86547 0.89617 0.91230 0.96046 0.91892 0.94030 0.97764 0.92125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.97 8.83 71.98 0.64 -2.34 16 2 C -0.09 -1.65 2.37 -11.54 -0.03 -1.68 16 3 H 0.11 1.96 7.96 -2.38 -0.02 1.94 16 4 C -0.12 -1.76 4.52 29.85 0.13 -1.63 16 5 C 0.52 8.32 7.82 87.66 0.69 9.00 16 6 N -0.84 -6.74 8.87 -173.53 -1.54 -8.28 16 7 O -0.58 -14.36 14.80 -3.03 -0.04 -14.41 16 8 C 0.52 11.58 7.15 87.66 0.63 12.21 16 9 O -0.57 -15.62 15.92 -3.04 -0.05 -15.67 16 10 N -0.71 -15.41 5.41 -466.81 -2.53 -17.94 16 11 C 0.17 3.93 5.10 85.63 0.44 4.37 16 12 C -0.12 -3.07 5.26 -19.77 -0.10 -3.18 16 13 C -0.10 -2.46 9.65 22.20 0.21 -2.24 16 14 C -0.12 -3.13 10.05 22.21 0.22 -2.91 16 15 C -0.12 -4.17 9.62 22.35 0.21 -3.95 16 16 C -0.11 -4.31 5.82 -19.82 -0.12 -4.43 16 17 C -0.06 -1.97 5.76 -19.85 -0.11 -2.09 16 18 C -0.08 -2.86 5.24 29.75 0.16 -2.70 16 19 C 0.14 5.70 6.52 86.18 0.56 6.26 16 20 N -0.61 -31.08 2.97 -704.23 -2.09 -33.17 16 21 C -0.26 -14.23 9.69 84.03 0.81 -13.42 16 22 H 0.07 3.79 7.88 -2.91 -0.02 3.77 16 23 C -0.05 -2.90 4.99 84.86 0.42 -2.47 16 24 N -0.94 -55.61 11.10 21.65 0.24 -55.37 16 25 Si 0.97 45.03 29.58 68.60 2.03 47.06 16 26 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 27 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16 28 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 29 C 0.22 11.00 4.85 85.63 0.42 11.41 16 30 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.06 1.25 7.56 -2.38 -0.02 1.23 16 32 H 0.08 1.73 5.95 -2.39 -0.01 1.72 16 33 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.11 1.45 7.96 -2.39 -0.02 1.43 16 35 H 0.41 2.70 8.93 -92.71 -0.83 1.87 16 36 H 0.42 0.85 8.83 -92.71 -0.82 0.03 16 37 H 0.41 8.52 7.88 -92.71 -0.73 7.79 16 38 H 0.07 1.77 6.34 -2.38 -0.02 1.75 16 39 H 0.08 1.74 7.99 -2.39 -0.02 1.73 16 40 H 0.15 2.54 8.03 -2.91 -0.02 2.52 16 41 H 0.15 2.85 8.06 -2.91 -0.02 2.83 16 42 H 0.12 3.85 8.05 -2.91 -0.02 3.83 16 43 H 0.09 2.48 6.25 -2.38 -0.01 2.47 16 44 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 45 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 46 H 0.06 2.52 7.96 -2.39 -0.02 2.51 16 47 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 48 H 0.00 0.25 8.14 -2.39 -0.02 0.23 16 49 H 0.06 3.38 6.34 -2.39 -0.02 3.36 16 Total: -1.00 -73.61 394.22 -0.17 -73.78 By element: Atomic # 1 Polarization: 25.15 SS G_CDS: -1.37 Total: 23.78 kcal Atomic # 6 Polarization: -4.97 SS G_CDS: 5.18 Total: 0.21 kcal Atomic # 7 Polarization: -108.84 SS G_CDS: -5.92 Total: -114.76 kcal Atomic # 8 Polarization: -29.98 SS G_CDS: -0.09 Total: -30.07 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -73.61 -0.17 -73.78 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673079580.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.272 kcal (2) G-P(sol) polarization free energy of solvation -73.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds