Wall clock time and date at job start Wed Apr 1 2020 03:51:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.46762 * 2 1 4 4 N 1.46506 * 109.46710 * 119.99420 * 2 1 3 5 5 C 1.34773 * 119.99968 * 275.00042 * 4 2 1 6 6 O 1.21283 * 120.00360 * 359.73034 * 5 4 2 7 7 C 1.50706 * 120.00081 * 180.02562 * 5 4 2 8 8 C 1.50696 * 109.47259 * 179.72770 * 7 5 4 9 9 C 1.38233 * 119.99904 * 269.72397 * 8 7 5 10 10 C 1.38231 * 119.99993 * 179.76482 * 9 8 7 11 11 C 1.38234 * 120.00100 * 0.48886 * 10 9 8 12 12 C 1.38243 * 119.99839 * 359.78963 * 11 10 9 13 13 C 1.38231 * 120.00100 * 89.99885 * 8 7 5 14 14 C 1.52995 * 109.47680 * 239.99372 * 2 1 3 15 15 C 1.53936 * 113.73450 * 156.72296 * 14 2 1 16 16 N 1.47954 * 86.18314 * 221.92264 * 15 14 2 17 17 C 1.46909 * 110.99911 * 137.58290 * 16 15 14 18 18 C 1.50699 * 109.46907 * 90.63965 * 17 16 15 19 19 O 1.21294 * 119.99765 * 0.02562 * 18 17 16 20 20 N 1.34775 * 119.99871 * 179.97438 * 18 17 16 21 21 C 1.37098 * 119.99833 * 180.02562 * 20 18 17 22 22 H 1.07994 * 119.99909 * 0.02562 * 21 20 18 23 23 C 1.38950 * 119.99993 * 180.02562 * 21 20 18 24 24 N 1.31423 * 119.99805 * 0.02562 * 23 21 20 25 25 Si 1.86794 * 120.00408 * 180.02562 * 23 21 20 26 26 H 1.48505 * 109.46874 * 0.02562 * 25 23 21 27 27 H 1.48496 * 109.47191 * 119.99575 * 25 23 21 28 28 H 1.48499 * 109.47347 * 240.00003 * 25 23 21 29 29 C 1.47965 * 90.76137 * 24.69339 * 16 15 14 30 30 H 1.08996 * 109.47804 * 300.00082 * 1 2 3 31 31 H 1.09002 * 109.46963 * 60.00572 * 1 2 3 32 32 H 1.09001 * 109.47185 * 180.02562 * 1 2 3 33 33 H 0.96998 * 119.99507 * 95.00898 * 4 2 1 34 34 H 1.09001 * 109.46564 * 299.73030 * 7 5 4 35 35 H 1.08998 * 109.47012 * 59.72084 * 7 5 4 36 36 H 1.08002 * 120.00456 * 0.02562 * 9 8 7 37 37 H 1.08006 * 120.00300 * 180.25191 * 10 9 8 38 38 H 1.08002 * 120.00376 * 179.76416 * 11 10 9 39 39 H 1.08001 * 119.99577 * 179.97438 * 12 11 10 40 40 H 1.08005 * 119.99934 * 0.02562 * 13 8 7 41 41 H 1.08996 * 112.93992 * 288.43553 * 14 2 1 42 42 H 1.09001 * 113.76037 * 336.24471 * 15 14 2 43 43 H 1.09006 * 113.75475 * 107.60606 * 15 14 2 44 44 H 1.08996 * 109.47001 * 210.64727 * 17 16 15 45 45 H 1.09006 * 109.46786 * 330.64438 * 17 16 15 46 46 H 0.96997 * 120.00109 * 0.02562 * 20 18 17 47 47 H 0.96993 * 119.99649 * 179.97438 * 24 23 21 48 48 H 1.09001 * 113.75631 * 220.98931 * 29 16 15 49 49 H 1.09004 * 113.76169 * 89.62834 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.1469 -0.0181 2.3572 6 8 1.8632 1.1599 2.4104 7 6 2.6497 -0.7282 3.5877 8 6 2.7066 0.2418 4.7395 9 6 3.8593 0.9671 4.9760 10 6 3.9099 1.8605 6.0296 11 6 2.8111 2.0211 6.8530 12 6 1.6603 1.2914 6.6200 13 6 1.6080 0.4020 5.5631 14 6 2.0401 -0.7213 -1.2491 15 6 3.4671 -0.3154 -1.6597 16 7 2.9607 -0.3148 -3.0498 17 6 3.4684 0.8452 -3.7946 18 6 4.7629 0.4788 -4.4736 19 8 5.2175 -0.6389 -4.3497 20 7 5.4149 1.3927 -5.2194 21 6 6.5923 1.0592 -5.8375 22 1 6.9971 0.0640 -5.7272 23 6 7.2648 2.0015 -6.6059 24 7 6.7725 3.2126 -6.7397 25 14 8.8686 1.5470 -7.4488 26 1 9.2050 0.1331 -7.1433 27 1 8.7209 1.7140 -8.9169 28 1 9.9547 2.4321 -6.9566 29 6 1.5824 -0.0740 -2.5686 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 2.2490 -1.6317 1.1528 34 1 1.9748 -1.5475 3.8355 35 1 3.6470 -1.1243 3.3965 36 1 4.7191 0.8390 4.3350 37 1 4.8091 2.4302 6.2119 38 1 2.8519 2.7163 7.6785 39 1 0.8020 1.4167 7.2635 40 1 0.7090 -0.1683 5.3812 41 1 1.8825 -1.7992 -1.2114 42 1 3.7641 0.6698 -1.3000 43 1 4.2154 -1.0838 -1.4651 44 1 2.7364 1.1441 -4.5448 45 1 3.6409 1.6721 -3.1056 46 1 5.0512 2.2864 -5.3187 47 1 7.2421 3.8705 -7.2758 48 1 0.8248 -0.6496 -3.1004 49 1 1.3281 0.9818 -2.4749 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001675322603.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:51:59 Heat of formation + Delta-G solvation = -15.510234 kcal Electronic energy + Delta-G solvation = -28940.816409 eV Core-core repulsion = 24868.608533 eV Total energy + Delta-G solvation = -4072.207876 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.63972 -39.89286 -38.86347 -37.73719 -35.41420 -33.85622 -33.25253 -31.58043 -31.14369 -31.13122 -29.46349 -27.80481 -26.19781 -25.55489 -24.16307 -22.83639 -22.56292 -21.41195 -20.65917 -19.59303 -19.15844 -17.87807 -17.30593 -17.08762 -16.58393 -16.07519 -15.88420 -15.44789 -15.18932 -15.00752 -14.83523 -14.63217 -14.29218 -13.96355 -13.71360 -13.66333 -13.44186 -13.36913 -13.05253 -12.80551 -12.69560 -12.55917 -12.36151 -12.23855 -11.84901 -11.60773 -11.41835 -11.35649 -11.26002 -11.07904 -10.94328 -10.67959 -10.64752 -10.32772 -10.19812 -10.05129 -9.48517 -9.30569 -9.14075 -8.97210 -8.69027 -8.14460 -7.93144 -6.39072 -3.79739 1.07493 1.18155 2.44879 2.91586 3.17785 3.27909 3.35260 3.59474 3.90808 3.96169 4.22606 4.31430 4.33036 4.52928 4.55558 4.70727 4.75406 4.85576 4.93310 4.98903 5.03067 5.11176 5.17251 5.22123 5.24491 5.25775 5.38566 5.39279 5.44895 5.52600 5.65680 5.70566 5.71904 5.76634 5.78800 5.79166 5.92101 6.02023 6.15099 6.20116 6.27194 6.30513 6.32134 6.34910 6.60451 6.75202 7.19182 7.28676 7.57766 8.03737 8.09224 8.65235 9.21335 9.57977 10.10412 10.78957 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013460 B = 0.001872 C = 0.001715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2079.804700 B =14952.345401 C =16321.495889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.150 3.850 3 H 0.088 0.912 4 N -0.725 5.725 5 C 0.514 3.486 6 O -0.531 6.531 7 C -0.104 4.104 8 C -0.065 4.065 9 C -0.105 4.105 10 C -0.119 4.119 11 C -0.122 4.122 12 C -0.121 4.121 13 C -0.106 4.106 14 C -0.125 4.125 15 C 0.018 3.982 16 N -0.449 5.449 17 C 0.010 3.990 18 C 0.447 3.553 19 O -0.576 6.576 20 N -0.568 5.568 21 C -0.297 4.297 22 H 0.103 0.897 23 C 0.020 3.980 24 N -0.903 5.903 25 Si 0.929 3.071 26 H -0.268 1.268 27 H -0.282 1.282 28 H -0.282 1.282 29 C 0.010 3.990 30 H 0.058 0.942 31 H 0.068 0.932 32 H 0.057 0.943 33 H 0.401 0.599 34 H 0.102 0.898 35 H 0.104 0.896 36 H 0.121 0.879 37 H 0.122 0.878 38 H 0.120 0.880 39 H 0.120 0.880 40 H 0.118 0.882 41 H 0.104 0.896 42 H 0.067 0.933 43 H 0.090 0.910 44 H 0.087 0.913 45 H 0.057 0.943 46 H 0.391 0.609 47 H 0.270 0.730 48 H 0.091 0.909 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.583 -5.430 24.357 28.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.045 3.955 3 H 0.106 0.894 4 N -0.377 5.377 5 C 0.300 3.700 6 O -0.406 6.406 7 C -0.144 4.144 8 C -0.066 4.066 9 C -0.123 4.123 10 C -0.137 4.137 11 C -0.140 4.140 12 C -0.139 4.139 13 C -0.124 4.124 14 C -0.144 4.144 15 C -0.111 4.111 16 N -0.171 5.171 17 C -0.122 4.122 18 C 0.232 3.768 19 O -0.459 6.459 20 N -0.205 5.205 21 C -0.427 4.427 22 H 0.121 0.879 23 C -0.181 4.181 24 N -0.545 5.545 25 Si 0.756 3.244 26 H -0.192 1.192 27 H -0.208 1.208 28 H -0.208 1.208 29 C -0.120 4.120 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.076 0.924 33 H 0.235 0.765 34 H 0.120 0.880 35 H 0.122 0.878 36 H 0.139 0.861 37 H 0.140 0.860 38 H 0.138 0.862 39 H 0.138 0.862 40 H 0.136 0.864 41 H 0.122 0.878 42 H 0.085 0.915 43 H 0.108 0.892 44 H 0.106 0.894 45 H 0.075 0.925 46 H 0.224 0.776 47 H 0.080 0.920 48 H 0.109 0.891 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -13.247 -5.707 23.900 27.915 hybrid contribution 0.578 0.858 -0.239 1.062 sum -12.668 -4.848 23.661 27.274 Atomic orbital electron populations 1.22134 0.95037 1.02171 1.02567 1.21044 0.94122 0.97237 0.83057 0.89401 1.46082 1.67839 1.14145 1.09590 1.20519 0.77674 0.87470 0.84294 1.90741 1.49282 1.15749 1.84864 1.20700 1.04137 0.98075 0.91508 1.19260 0.94356 0.97629 0.95334 1.21021 0.97694 0.96086 0.97483 1.21128 0.98710 0.98374 0.95474 1.21153 0.93575 0.99570 0.99689 1.21096 0.98069 0.96756 0.97950 1.20958 0.97518 0.98812 0.95151 1.23315 0.96985 1.01135 0.92978 1.23984 0.96213 1.01515 0.89409 1.68380 1.01887 1.36039 1.10804 1.22485 0.98046 0.92727 0.98990 1.19695 0.86548 0.86365 0.84185 1.90514 1.68788 1.21448 1.65177 1.41889 1.21776 1.12999 1.43865 1.19742 0.98051 0.99423 1.25437 0.87927 1.25261 0.99880 0.95017 0.97940 1.69626 1.40160 1.03803 1.40878 0.85803 0.81092 0.78776 0.78691 1.19247 1.20770 1.20795 1.23963 0.94229 0.99931 0.93878 0.92268 0.91351 0.92367 0.76509 0.87960 0.87764 0.86132 0.86034 0.86212 0.86158 0.86356 0.87801 0.91452 0.89151 0.89427 0.92468 0.77563 0.91981 0.89102 0.91200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.38 9.29 37.16 0.35 -1.03 16 2 C 0.15 1.44 2.42 -67.93 -0.16 1.27 16 3 H 0.09 1.06 7.37 -51.93 -0.38 0.68 16 4 N -0.72 -5.97 5.08 -53.80 -0.27 -6.24 16 5 C 0.51 5.17 7.79 -10.98 -0.09 5.08 16 6 O -0.53 -7.68 15.69 5.56 0.09 -7.59 16 7 C -0.10 -0.74 5.83 -29.03 -0.17 -0.91 16 8 C -0.07 -0.60 4.37 -104.63 -0.46 -1.06 16 9 C -0.10 -1.00 9.70 -39.59 -0.38 -1.38 16 10 C -0.12 -1.06 10.05 -39.59 -0.40 -1.46 16 11 C -0.12 -1.02 10.05 -39.58 -0.40 -1.42 16 12 C -0.12 -1.01 10.05 -39.58 -0.40 -1.41 16 13 C -0.11 -0.94 9.70 -39.59 -0.38 -1.33 16 14 C -0.12 -1.28 3.49 -89.69 -0.31 -1.59 16 15 C 0.02 0.25 7.51 -2.77 -0.02 0.23 16 16 N -0.45 -7.35 5.65 -239.72 -1.35 -8.70 16 17 C 0.01 0.17 5.28 -4.97 -0.03 0.15 16 18 C 0.45 10.85 7.83 -10.99 -0.09 10.77 16 19 O -0.58 -16.09 16.01 5.55 0.09 -16.00 16 20 N -0.57 -14.73 5.29 -10.96 -0.06 -14.79 16 21 C -0.30 -8.43 9.68 -14.93 -0.14 -8.58 16 22 H 0.10 3.06 7.16 -52.49 -0.38 2.69 16 23 C 0.02 0.55 5.50 -17.46 -0.10 0.46 16 24 N -0.90 -24.95 13.05 55.50 0.72 -24.23 16 25 Si 0.93 21.34 29.55 -169.99 -5.02 16.32 16 26 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 27 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 28 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 29 C 0.01 0.11 6.57 -2.76 -0.02 0.09 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.55 7.43 -51.93 -0.39 0.16 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.40 2.26 8.60 -40.82 -0.35 1.90 16 34 H 0.10 0.47 8.09 -51.93 -0.42 0.05 16 35 H 0.10 0.56 8.08 -51.93 -0.42 0.14 16 36 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 37 H 0.12 0.86 8.06 -52.48 -0.42 0.43 16 38 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 39 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 40 H 0.12 0.85 8.06 -52.48 -0.42 0.42 16 41 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 42 H 0.07 0.96 7.29 -51.93 -0.38 0.59 16 43 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 44 H 0.09 1.44 8.08 -51.93 -0.42 1.02 16 45 H 0.06 0.94 7.38 -51.93 -0.38 0.56 16 46 H 0.39 9.70 7.90 -40.82 -0.32 9.38 16 47 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 48 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 49 H 0.07 0.75 7.85 -51.93 -0.41 0.34 16 LS Contribution 411.27 15.07 6.20 6.20 Total: -1.00 -35.91 411.27 -10.42 -46.32 By element: Atomic # 1 Polarization: 18.43 SS G_CDS: -7.61 Total: 10.82 kcal Atomic # 6 Polarization: 1.09 SS G_CDS: -3.20 Total: -2.11 kcal Atomic # 7 Polarization: -53.00 SS G_CDS: -0.96 Total: -53.96 kcal Atomic # 8 Polarization: -23.77 SS G_CDS: 0.18 Total: -23.59 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -35.91 -10.42 -46.32 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675322603.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.813 kcal (2) G-P(sol) polarization free energy of solvation -35.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds