Wall clock time and date at job start Wed Apr 1 2020 03:51:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.46762 * 2 1 4 4 N 1.46506 * 109.46710 * 119.99420 * 2 1 3 5 5 C 1.34773 * 119.99968 * 275.00042 * 4 2 1 6 6 O 1.21283 * 120.00360 * 359.73034 * 5 4 2 7 7 C 1.50706 * 120.00081 * 180.02562 * 5 4 2 8 8 C 1.50696 * 109.47259 * 179.72770 * 7 5 4 9 9 C 1.38233 * 119.99904 * 269.72397 * 8 7 5 10 10 C 1.38231 * 119.99993 * 179.76482 * 9 8 7 11 11 C 1.38234 * 120.00100 * 0.48886 * 10 9 8 12 12 C 1.38243 * 119.99839 * 359.78963 * 11 10 9 13 13 C 1.38231 * 120.00100 * 89.99885 * 8 7 5 14 14 C 1.52995 * 109.47680 * 239.99372 * 2 1 3 15 15 C 1.53936 * 113.73450 * 156.72296 * 14 2 1 16 16 N 1.47954 * 86.18314 * 221.92264 * 15 14 2 17 17 C 1.46909 * 110.99911 * 137.58290 * 16 15 14 18 18 C 1.50699 * 109.46907 * 90.63965 * 17 16 15 19 19 O 1.21294 * 119.99765 * 0.02562 * 18 17 16 20 20 N 1.34775 * 119.99871 * 179.97438 * 18 17 16 21 21 C 1.37098 * 119.99833 * 180.02562 * 20 18 17 22 22 H 1.07994 * 119.99909 * 0.02562 * 21 20 18 23 23 C 1.38950 * 119.99993 * 180.02562 * 21 20 18 24 24 N 1.31423 * 119.99805 * 0.02562 * 23 21 20 25 25 Si 1.86794 * 120.00408 * 180.02562 * 23 21 20 26 26 H 1.48505 * 109.46874 * 0.02562 * 25 23 21 27 27 H 1.48496 * 109.47191 * 119.99575 * 25 23 21 28 28 H 1.48499 * 109.47347 * 240.00003 * 25 23 21 29 29 C 1.47965 * 90.76137 * 24.69339 * 16 15 14 30 30 H 1.08996 * 109.47804 * 300.00082 * 1 2 3 31 31 H 1.09002 * 109.46963 * 60.00572 * 1 2 3 32 32 H 1.09001 * 109.47185 * 180.02562 * 1 2 3 33 33 H 0.96998 * 119.99507 * 95.00898 * 4 2 1 34 34 H 1.09001 * 109.46564 * 299.73030 * 7 5 4 35 35 H 1.08998 * 109.47012 * 59.72084 * 7 5 4 36 36 H 1.08002 * 120.00456 * 0.02562 * 9 8 7 37 37 H 1.08006 * 120.00300 * 180.25191 * 10 9 8 38 38 H 1.08002 * 120.00376 * 179.76416 * 11 10 9 39 39 H 1.08001 * 119.99577 * 179.97438 * 12 11 10 40 40 H 1.08005 * 119.99934 * 0.02562 * 13 8 7 41 41 H 1.08996 * 112.93992 * 288.43553 * 14 2 1 42 42 H 1.09001 * 113.76037 * 336.24471 * 15 14 2 43 43 H 1.09006 * 113.75475 * 107.60606 * 15 14 2 44 44 H 1.08996 * 109.47001 * 210.64727 * 17 16 15 45 45 H 1.09006 * 109.46786 * 330.64438 * 17 16 15 46 46 H 0.96997 * 120.00109 * 0.02562 * 20 18 17 47 47 H 0.96993 * 119.99649 * 179.97438 * 24 23 21 48 48 H 1.09001 * 113.75631 * 220.98931 * 29 16 15 49 49 H 1.09004 * 113.76169 * 89.62834 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.1469 -0.0181 2.3572 6 8 1.8632 1.1599 2.4104 7 6 2.6497 -0.7282 3.5877 8 6 2.7066 0.2418 4.7395 9 6 3.8593 0.9671 4.9760 10 6 3.9099 1.8605 6.0296 11 6 2.8111 2.0211 6.8530 12 6 1.6603 1.2914 6.6200 13 6 1.6080 0.4020 5.5631 14 6 2.0401 -0.7213 -1.2491 15 6 3.4671 -0.3154 -1.6597 16 7 2.9607 -0.3148 -3.0498 17 6 3.4684 0.8452 -3.7946 18 6 4.7629 0.4788 -4.4736 19 8 5.2175 -0.6389 -4.3497 20 7 5.4149 1.3927 -5.2194 21 6 6.5923 1.0592 -5.8375 22 1 6.9971 0.0640 -5.7272 23 6 7.2648 2.0015 -6.6059 24 7 6.7725 3.2126 -6.7397 25 14 8.8686 1.5470 -7.4488 26 1 9.2050 0.1331 -7.1433 27 1 8.7209 1.7140 -8.9169 28 1 9.9547 2.4321 -6.9566 29 6 1.5824 -0.0740 -2.5686 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 2.2490 -1.6317 1.1528 34 1 1.9748 -1.5475 3.8355 35 1 3.6470 -1.1243 3.3965 36 1 4.7191 0.8390 4.3350 37 1 4.8091 2.4302 6.2119 38 1 2.8519 2.7163 7.6785 39 1 0.8020 1.4167 7.2635 40 1 0.7090 -0.1683 5.3812 41 1 1.8825 -1.7992 -1.2114 42 1 3.7641 0.6698 -1.3000 43 1 4.2154 -1.0838 -1.4651 44 1 2.7364 1.1441 -4.5448 45 1 3.6409 1.6721 -3.1056 46 1 5.0512 2.2864 -5.3187 47 1 7.2421 3.8705 -7.2758 48 1 0.8248 -0.6496 -3.1004 49 1 1.3281 0.9818 -2.4749 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001675322603.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:51:57 Heat of formation + Delta-G solvation = -41.639219 kcal Electronic energy + Delta-G solvation = -28941.949447 eV Core-core repulsion = 24868.608533 eV Total energy + Delta-G solvation = -4073.340914 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.59303 -40.80886 -39.79504 -39.38373 -36.35423 -35.89177 -33.91907 -33.31815 -32.41632 -31.75213 -30.63593 -28.44141 -27.54624 -26.88473 -25.59954 -23.50907 -23.46396 -22.24322 -21.43688 -20.99348 -20.48299 -19.90002 -18.13221 -17.80116 -17.79784 -17.35313 -16.64201 -16.57996 -16.49737 -16.26365 -16.00425 -15.70532 -15.50407 -15.38443 -14.92921 -14.68256 -14.29403 -14.22470 -14.06775 -13.88241 -13.69397 -13.54265 -13.44149 -13.34900 -12.99295 -12.87064 -12.70040 -12.66527 -12.42582 -12.13542 -12.00532 -11.85719 -11.82888 -11.78058 -11.63818 -11.51624 -10.89829 -10.38983 -10.10198 -10.02489 -9.78779 -9.63929 -9.58405 -8.48090 -5.97091 0.43584 0.53410 1.35240 1.39965 1.54600 1.69770 2.04126 2.21471 2.27689 2.77876 2.94655 3.17859 3.31680 3.46389 3.65335 3.71832 3.96648 4.02518 4.16560 4.17409 4.18960 4.23724 4.28996 4.35027 4.40177 4.44060 4.47755 4.51147 4.53220 4.61604 4.66580 4.76703 4.79864 4.82351 4.84461 5.00892 5.14662 5.17527 5.21987 5.33218 5.39122 5.43507 5.57095 5.59318 5.64129 5.68194 5.89335 6.08016 6.14497 6.59111 6.62338 7.11596 7.33111 7.54983 8.11248 8.69689 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013460 B = 0.001872 C = 0.001715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2079.804700 B =14952.345401 C =16321.495889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.156 3.844 3 H 0.062 0.938 4 N -0.714 5.714 5 C 0.513 3.487 6 O -0.580 6.580 7 C -0.098 4.098 8 C -0.080 4.080 9 C -0.127 4.127 10 C -0.134 4.134 11 C -0.132 4.132 12 C -0.130 4.130 13 C -0.120 4.120 14 C -0.096 4.096 15 C 0.010 3.990 16 N -0.482 5.482 17 C 0.023 3.977 18 C 0.442 3.558 19 O -0.618 6.618 20 N -0.577 5.577 21 C -0.333 4.333 22 H 0.078 0.922 23 C -0.015 4.015 24 N -0.922 5.922 25 Si 0.994 3.006 26 H -0.273 1.273 27 H -0.270 1.270 28 H -0.270 1.270 29 C 0.015 3.985 30 H 0.043 0.957 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.416 0.584 34 H 0.132 0.868 35 H 0.122 0.878 36 H 0.123 0.877 37 H 0.133 0.867 38 H 0.139 0.861 39 H 0.140 0.860 40 H 0.133 0.867 41 H 0.122 0.878 42 H 0.061 0.939 43 H 0.073 0.927 44 H 0.108 0.892 45 H 0.073 0.927 46 H 0.395 0.605 47 H 0.277 0.723 48 H 0.108 0.892 49 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.747 -6.085 24.854 29.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.051 3.949 3 H 0.080 0.920 4 N -0.366 5.366 5 C 0.301 3.699 6 O -0.460 6.460 7 C -0.138 4.138 8 C -0.080 4.080 9 C -0.145 4.145 10 C -0.152 4.152 11 C -0.150 4.150 12 C -0.148 4.148 13 C -0.138 4.138 14 C -0.115 4.115 15 C -0.119 4.119 16 N -0.204 5.204 17 C -0.109 4.109 18 C 0.229 3.771 19 O -0.503 6.503 20 N -0.215 5.215 21 C -0.462 4.462 22 H 0.096 0.904 23 C -0.215 4.215 24 N -0.563 5.563 25 Si 0.818 3.182 26 H -0.198 1.198 27 H -0.195 1.195 28 H -0.196 1.196 29 C -0.114 4.114 30 H 0.062 0.938 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.253 0.747 34 H 0.150 0.850 35 H 0.140 0.860 36 H 0.141 0.859 37 H 0.151 0.849 38 H 0.156 0.844 39 H 0.158 0.842 40 H 0.151 0.849 41 H 0.140 0.860 42 H 0.079 0.921 43 H 0.091 0.909 44 H 0.126 0.874 45 H 0.091 0.909 46 H 0.229 0.771 47 H 0.087 0.913 48 H 0.127 0.873 49 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -14.432 -6.376 24.397 29.054 hybrid contribution 0.921 1.060 -0.366 1.451 sum -13.511 -5.317 24.031 28.077 Atomic orbital electron populations 1.22070 0.93679 1.03225 1.02233 1.20871 0.94987 0.95893 0.83174 0.91991 1.45991 1.67035 1.14811 1.08798 1.21019 0.76739 0.86927 0.85240 1.90722 1.51611 1.17968 1.85670 1.20749 1.05739 0.97988 0.89282 1.19551 0.94342 0.98077 0.96051 1.21252 0.98299 0.96842 0.98085 1.21403 0.99581 0.98569 0.95614 1.21460 0.93467 0.99933 1.00172 1.21437 0.98760 0.96456 0.98158 1.21261 0.98013 0.99211 0.95315 1.23124 0.93618 1.02041 0.92731 1.23996 0.98174 1.00837 0.88911 1.68347 1.04710 1.35566 1.11811 1.22355 0.94969 0.93970 0.99595 1.20812 0.87899 0.85361 0.83005 1.90474 1.70344 1.23175 1.66343 1.41978 1.21602 1.13511 1.44410 1.19695 0.99865 0.99021 1.27638 0.90409 1.26073 1.02818 0.94752 0.97839 1.69686 1.41303 1.04338 1.40952 0.84852 0.77123 0.78232 0.78009 1.19785 1.19488 1.19563 1.24085 0.92009 1.01244 0.94038 0.93766 0.90574 0.90551 0.74686 0.84997 0.85972 0.85926 0.84887 0.84358 0.84227 0.84896 0.85974 0.92110 0.90869 0.87411 0.90885 0.77116 0.91314 0.87336 0.89939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 9.29 71.98 0.67 -1.60 16 2 C 0.16 2.73 2.42 44.99 0.11 2.84 16 3 H 0.06 1.46 7.37 -2.39 -0.02 1.45 16 4 N -0.71 -10.52 5.08 -442.53 -2.25 -12.77 16 5 C 0.51 9.80 7.79 87.66 0.68 10.48 16 6 O -0.58 -16.87 15.69 -3.04 -0.05 -16.92 16 7 C -0.10 -1.23 5.83 29.10 0.17 -1.06 16 8 C -0.08 -1.42 4.37 -19.87 -0.09 -1.51 16 9 C -0.13 -2.43 9.70 22.27 0.22 -2.21 16 10 C -0.13 -2.38 10.05 22.27 0.22 -2.16 16 11 C -0.13 -2.15 10.05 22.27 0.22 -1.92 16 12 C -0.13 -2.07 10.05 22.27 0.22 -1.85 16 13 C -0.12 -2.02 9.70 22.27 0.22 -1.80 16 14 C -0.10 -1.76 3.49 -10.15 -0.04 -1.80 16 15 C 0.01 0.27 7.51 86.41 0.65 0.92 16 16 N -0.48 -15.27 5.65 -912.33 -5.15 -20.42 16 17 C 0.02 0.81 5.28 85.56 0.45 1.27 16 18 C 0.44 21.86 7.83 87.66 0.69 22.55 16 19 O -0.62 -35.51 16.01 -3.07 -0.05 -35.56 16 20 N -0.58 -30.62 5.29 -306.99 -1.62 -32.24 16 21 C -0.33 -19.39 9.68 84.04 0.81 -18.57 16 22 H 0.08 4.84 7.16 -2.91 -0.02 4.82 16 23 C -0.02 -0.84 5.50 84.92 0.47 -0.37 16 24 N -0.92 -50.72 13.05 21.66 0.28 -50.44 16 25 Si 0.99 43.71 29.55 68.60 2.03 45.74 16 26 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 27 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 28 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 29 C 0.01 0.31 6.57 86.41 0.57 0.88 16 30 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.08 1.01 7.43 -2.39 -0.02 0.99 16 32 H 0.08 0.86 8.14 -2.39 -0.02 0.85 16 33 H 0.42 3.60 8.60 -92.71 -0.80 2.80 16 34 H 0.13 0.84 8.09 -2.39 -0.02 0.82 16 35 H 0.12 1.08 8.08 -2.39 -0.02 1.06 16 36 H 0.12 2.13 8.06 -2.91 -0.02 2.11 16 37 H 0.13 1.88 8.06 -2.91 -0.02 1.86 16 38 H 0.14 1.58 8.06 -2.91 -0.02 1.56 16 39 H 0.14 1.54 8.06 -2.91 -0.02 1.52 16 40 H 0.13 1.71 8.06 -2.91 -0.02 1.68 16 41 H 0.12 1.87 8.14 -2.39 -0.02 1.85 16 42 H 0.06 1.75 7.29 -2.39 -0.02 1.73 16 43 H 0.07 2.25 8.14 -2.38 -0.02 2.23 16 44 H 0.11 3.37 8.08 -2.39 -0.02 3.35 16 45 H 0.07 2.36 7.38 -2.38 -0.02 2.34 16 46 H 0.40 19.91 7.90 -92.71 -0.73 19.18 16 47 H 0.28 14.22 8.31 -92.71 -0.77 13.45 16 48 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 49 H 0.08 1.54 7.85 -2.38 -0.02 1.52 16 Total: -1.00 -80.22 411.27 -1.13 -81.34 By element: Atomic # 1 Polarization: 37.75 SS G_CDS: -0.56 Total: 37.19 kcal Atomic # 6 Polarization: -2.17 SS G_CDS: 6.25 Total: 4.08 kcal Atomic # 7 Polarization: -107.12 SS G_CDS: -8.74 Total: -115.87 kcal Atomic # 8 Polarization: -52.39 SS G_CDS: -0.10 Total: -52.49 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Total: -80.22 -1.13 -81.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675322603.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.705 kcal (2) G-P(sol) polarization free energy of solvation -80.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds