Wall clock time and date at job start Wed Apr 1 2020 03:52:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.47663 * 2 1 4 4 N 1.46507 * 109.46985 * 239.99850 * 2 1 3 5 5 C 1.34777 * 119.99688 * 85.00062 * 4 2 1 6 6 O 1.21286 * 120.00309 * 0.02562 * 5 4 2 7 7 C 1.50695 * 120.00058 * 179.97438 * 5 4 2 8 8 C 1.50704 * 109.47235 * 179.97438 * 7 5 4 9 9 C 1.38239 * 119.99426 * 90.00623 * 8 7 5 10 10 C 1.38238 * 119.99750 * 179.97438 * 9 8 7 11 11 C 1.38240 * 119.99754 * 0.08668 * 10 9 8 12 12 C 1.38227 * 120.00144 * 359.86997 * 11 10 9 13 13 C 1.38230 * 120.00475 * 269.98178 * 8 7 5 14 14 C 1.53000 * 109.47396 * 120.00508 * 2 1 3 15 15 C 1.53936 * 113.73041 * 281.72829 * 14 2 1 16 16 N 1.47954 * 86.18097 * 221.91852 * 15 14 2 17 17 C 1.46900 * 111.00265 * 137.58455 * 16 15 14 18 18 C 1.50702 * 109.47367 * 90.63911 * 17 16 15 19 19 O 1.21291 * 119.99646 * 0.02562 * 18 17 16 20 20 N 1.34780 * 119.99728 * 180.02562 * 18 17 16 21 21 C 1.37091 * 119.99512 * 179.97438 * 20 18 17 22 22 H 1.08000 * 120.00604 * 0.02562 * 21 20 18 23 23 C 1.38949 * 119.99929 * 180.02562 * 21 20 18 24 24 N 1.31404 * 119.99979 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 120.00080 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47301 * 359.97438 * 25 23 21 27 27 H 1.48504 * 109.47154 * 119.99977 * 25 23 21 28 28 H 1.48501 * 109.47170 * 239.99957 * 25 23 21 29 29 C 1.47963 * 90.76409 * 24.68901 * 16 15 14 30 30 H 1.09004 * 109.46891 * 300.04780 * 1 2 3 31 31 H 1.08996 * 109.47279 * 60.04692 * 1 2 3 32 32 H 1.08997 * 109.47692 * 180.02562 * 1 2 3 33 33 H 0.96996 * 120.00194 * 265.00067 * 4 2 1 34 34 H 1.09002 * 109.47138 * 60.00650 * 7 5 4 35 35 H 1.08994 * 109.47616 * 300.00694 * 7 5 4 36 36 H 1.07995 * 120.00264 * 359.69727 * 9 8 7 37 37 H 1.07999 * 119.99919 * 179.97438 * 10 9 8 38 38 H 1.08002 * 119.99929 * 179.97438 * 11 10 9 39 39 H 1.08000 * 120.00203 * 180.02562 * 12 11 10 40 40 H 1.08003 * 119.99529 * 359.97438 * 13 8 7 41 41 H 1.09004 * 112.93979 * 53.43096 * 14 2 1 42 42 H 1.09000 * 113.76146 * 336.23653 * 15 14 2 43 43 H 1.08999 * 113.76215 * 107.59946 * 15 14 2 44 44 H 1.09003 * 109.47451 * 210.64568 * 17 16 15 45 45 H 1.09002 * 109.46684 * 330.63448 * 17 16 15 46 46 H 0.96997 * 120.00133 * 0.02562 * 20 18 17 47 47 H 0.97001 * 120.00435 * 180.02562 * 24 23 21 48 48 H 1.09002 * 113.75890 * 220.99300 * 29 16 15 49 49 H 1.09000 * 113.85931 * 89.63813 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1962 5 6 2.1470 -0.0183 -2.3572 6 8 1.8590 1.1586 -2.4116 7 6 2.6498 -0.7285 -3.5875 8 6 2.6998 0.2397 -4.7413 9 6 3.8470 0.9736 -4.9784 10 6 3.8931 1.8614 -6.0371 11 6 2.7913 2.0165 -6.8575 12 6 1.6445 1.2819 -6.6209 13 6 1.5987 0.3935 -5.5628 14 6 2.0400 -0.7213 1.2492 15 6 1.9765 0.1337 2.5276 16 7 3.3109 -0.4204 2.8459 17 6 4.2040 0.6234 3.3663 18 6 4.0865 0.6825 4.8676 19 8 3.3333 -0.0712 5.4470 20 7 4.8185 1.5728 5.5663 21 6 4.7112 1.6268 6.9319 22 1 4.0405 0.9558 7.4479 23 6 5.4653 2.5450 7.6522 24 7 6.2817 3.3612 7.0245 25 14 5.3197 2.6182 9.5131 26 1 4.3402 1.6013 9.9734 27 1 6.6446 2.3423 10.1245 28 1 4.8582 3.9695 9.9207 29 6 3.5700 -0.6731 1.4112 30 1 -0.3633 0.5146 0.8896 31 1 -0.3633 0.5131 -0.8904 32 1 -0.3634 -1.0276 0.0005 33 1 2.2490 -1.6318 -1.1527 34 1 1.9775 -1.5507 -3.8326 35 1 3.6490 -1.1204 -3.3980 36 1 4.7056 0.8568 -4.3339 37 1 4.7892 2.4351 -6.2221 38 1 2.8271 2.7103 -7.6843 39 1 0.7839 1.4027 -7.2621 40 1 0.7027 -0.1805 -5.3779 41 1 1.6178 -1.7195 1.3655 42 1 1.9804 1.2072 2.3387 43 1 1.1959 -0.1739 3.2234 44 1 5.2330 0.3917 3.0911 45 1 3.9227 1.5871 2.9416 46 1 5.4205 2.1758 5.1028 47 1 6.8085 4.0020 7.5273 48 1 4.0627 -1.6254 1.2150 49 1 4.0402 0.1634 0.8941 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001675322604.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:52:03 Heat of formation + Delta-G solvation = -15.747183 kcal Electronic energy + Delta-G solvation = -28908.369068 eV Core-core repulsion = 24836.150917 eV Total energy + Delta-G solvation = -4072.218151 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.66331 -39.89728 -38.88130 -37.73341 -35.42220 -33.85554 -33.28468 -31.57811 -31.16274 -31.14482 -29.50667 -27.82036 -25.99665 -25.76074 -24.15395 -22.86844 -22.54838 -21.40731 -20.64121 -19.66415 -19.17684 -17.88117 -17.33420 -17.12051 -16.55216 -16.02981 -15.88798 -15.52398 -15.35361 -15.04440 -14.76806 -14.58308 -14.28817 -13.93412 -13.72095 -13.69589 -13.50873 -13.39039 -12.99557 -12.80005 -12.72376 -12.56492 -12.34170 -12.25800 -11.93371 -11.55599 -11.44182 -11.30607 -11.28293 -11.06987 -10.91172 -10.84897 -10.57672 -10.32403 -10.19466 -10.07532 -9.48425 -9.32212 -9.17108 -9.00276 -8.69956 -8.14540 -7.93143 -6.38953 -3.79611 1.04414 1.15066 2.42079 2.88289 3.18015 3.28181 3.35605 3.56339 3.90619 3.95874 4.23431 4.28227 4.33130 4.49751 4.55516 4.68387 4.72468 4.82624 4.89633 4.99082 5.04882 5.07018 5.14975 5.21421 5.22693 5.27148 5.35371 5.42254 5.45937 5.53515 5.67356 5.69209 5.69831 5.74654 5.75575 5.78829 5.94942 6.01028 6.16953 6.21063 6.24191 6.28706 6.29713 6.31302 6.59924 6.72120 7.18648 7.26493 7.57896 8.01240 8.09303 8.65333 9.21474 9.58034 10.10475 10.79075 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.018762 B = 0.001723 C = 0.001632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.020896 B =16249.462973 C =17153.611350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.150 3.850 3 H 0.088 0.912 4 N -0.725 5.725 5 C 0.514 3.486 6 O -0.530 6.530 7 C -0.104 4.104 8 C -0.066 4.066 9 C -0.105 4.105 10 C -0.119 4.119 11 C -0.122 4.122 12 C -0.120 4.120 13 C -0.106 4.106 14 C -0.126 4.126 15 C 0.023 3.977 16 N -0.448 5.448 17 C 0.010 3.990 18 C 0.447 3.553 19 O -0.576 6.576 20 N -0.568 5.568 21 C -0.297 4.297 22 H 0.103 0.897 23 C 0.021 3.979 24 N -0.903 5.903 25 Si 0.929 3.071 26 H -0.268 1.268 27 H -0.282 1.282 28 H -0.282 1.282 29 C 0.005 3.995 30 H 0.069 0.931 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.400 0.600 34 H 0.102 0.898 35 H 0.103 0.897 36 H 0.120 0.880 37 H 0.121 0.879 38 H 0.120 0.880 39 H 0.121 0.879 40 H 0.119 0.881 41 H 0.104 0.896 42 H 0.069 0.931 43 H 0.094 0.906 44 H 0.087 0.913 45 H 0.057 0.943 46 H 0.391 0.609 47 H 0.270 0.730 48 H 0.087 0.913 49 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.860 -7.439 -28.263 30.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.046 3.954 3 H 0.106 0.894 4 N -0.376 5.376 5 C 0.300 3.700 6 O -0.405 6.405 7 C -0.144 4.144 8 C -0.066 4.066 9 C -0.123 4.123 10 C -0.137 4.137 11 C -0.140 4.140 12 C -0.138 4.138 13 C -0.124 4.124 14 C -0.145 4.145 15 C -0.107 4.107 16 N -0.170 5.170 17 C -0.122 4.122 18 C 0.232 3.768 19 O -0.459 6.459 20 N -0.205 5.205 21 C -0.427 4.427 22 H 0.121 0.879 23 C -0.181 4.181 24 N -0.545 5.545 25 Si 0.756 3.244 26 H -0.192 1.192 27 H -0.208 1.208 28 H -0.208 1.208 29 C -0.124 4.124 30 H 0.088 0.912 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.234 0.766 34 H 0.120 0.880 35 H 0.122 0.878 36 H 0.138 0.862 37 H 0.140 0.860 38 H 0.138 0.862 39 H 0.139 0.861 40 H 0.137 0.863 41 H 0.123 0.877 42 H 0.087 0.913 43 H 0.112 0.888 44 H 0.105 0.895 45 H 0.075 0.925 46 H 0.224 0.776 47 H 0.080 0.920 48 H 0.105 0.895 49 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -7.374 -7.460 -27.314 29.259 hybrid contribution 0.593 0.854 0.216 1.062 sum -6.781 -6.606 -27.098 28.704 Atomic orbital electron populations 1.22130 0.94965 1.02177 1.02666 1.21042 0.94282 0.97143 0.82952 0.89422 1.46069 1.67829 1.14110 1.09625 1.20522 0.77779 0.87474 0.84267 1.90749 1.49147 1.15855 1.84798 1.20695 1.04069 0.98105 0.91503 1.19263 0.94380 0.97629 0.95346 1.21003 0.97725 0.96130 0.97438 1.21125 0.98669 0.98433 0.95485 1.21153 0.93564 0.99519 0.99723 1.21099 0.98116 0.96693 0.97926 1.20966 0.97487 0.98818 0.95141 1.23342 0.96460 1.00941 0.93777 1.23917 0.94612 0.97409 0.94735 1.68377 1.01835 1.33495 1.13334 1.22483 0.98677 0.94467 0.96596 1.19692 0.85005 0.84312 0.87797 1.90517 1.41053 1.43572 1.70736 1.41888 1.38531 1.32652 1.07451 1.19746 1.23324 1.18032 0.81578 0.87908 1.25255 0.96171 0.95995 1.00643 1.69618 1.26549 1.21753 1.36558 0.85805 0.78126 0.78123 0.82314 1.19233 1.20774 1.20801 1.23967 0.95545 1.02077 0.90823 0.91232 0.92270 0.92381 0.76579 0.87963 0.87836 0.86194 0.86049 0.86199 0.86138 0.86335 0.87733 0.91256 0.88784 0.89514 0.92460 0.77573 0.91979 0.89469 0.91471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.47 9.44 37.16 0.35 -1.12 16 2 C 0.15 1.44 2.29 -67.93 -0.16 1.28 16 3 H 0.09 1.05 7.48 -51.93 -0.39 0.66 16 4 N -0.72 -5.56 4.94 -53.80 -0.27 -5.83 16 5 C 0.51 4.87 7.79 -10.99 -0.09 4.78 16 6 O -0.53 -7.46 15.70 5.55 0.09 -7.37 16 7 C -0.10 -0.67 5.83 -29.04 -0.17 -0.84 16 8 C -0.07 -0.57 4.37 -104.62 -0.46 -1.03 16 9 C -0.10 -0.93 9.70 -39.58 -0.38 -1.31 16 10 C -0.12 -1.00 10.05 -39.58 -0.40 -1.39 16 11 C -0.12 -0.97 10.05 -39.58 -0.40 -1.37 16 12 C -0.12 -0.97 10.05 -39.59 -0.40 -1.37 16 13 C -0.11 -0.90 9.70 -39.59 -0.38 -1.29 16 14 C -0.13 -1.29 3.35 -89.69 -0.30 -1.59 16 15 C 0.02 0.32 7.41 -2.77 -0.02 0.30 16 16 N -0.45 -7.33 5.65 -239.74 -1.35 -8.68 16 17 C 0.01 0.18 5.28 -4.97 -0.03 0.15 16 18 C 0.45 10.84 7.83 -10.98 -0.09 10.75 16 19 O -0.58 -16.07 16.01 5.55 0.09 -15.98 16 20 N -0.57 -14.72 5.29 -10.96 -0.06 -14.78 16 21 C -0.30 -8.44 9.68 -14.94 -0.14 -8.58 16 22 H 0.10 3.07 7.16 -52.49 -0.38 2.69 16 23 C 0.02 0.56 5.50 -17.47 -0.10 0.46 16 24 N -0.90 -24.95 13.05 55.50 0.72 -24.22 16 25 Si 0.93 21.34 29.55 -169.99 -5.02 16.31 16 26 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 27 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 28 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 29 C 0.01 0.06 7.38 -2.77 -0.02 0.04 16 30 H 0.07 0.64 8.09 -51.93 -0.42 0.22 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.40 1.98 8.60 -40.82 -0.35 1.63 16 34 H 0.10 0.42 8.08 -51.93 -0.42 0.00 16 35 H 0.10 0.46 8.09 -51.93 -0.42 0.04 16 36 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 37 H 0.12 0.79 8.06 -52.49 -0.42 0.36 16 38 H 0.12 0.71 8.06 -52.49 -0.42 0.28 16 39 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 40 H 0.12 0.82 8.06 -52.48 -0.42 0.40 16 41 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 42 H 0.07 0.95 7.36 -51.93 -0.38 0.57 16 43 H 0.09 1.42 8.14 -51.93 -0.42 0.99 16 44 H 0.09 1.43 8.08 -51.93 -0.42 1.01 16 45 H 0.06 0.95 7.38 -51.93 -0.38 0.56 16 46 H 0.39 9.69 7.90 -40.82 -0.32 9.37 16 47 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 48 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 49 H 0.07 0.76 7.88 -51.93 -0.41 0.35 16 LS Contribution 412.62 15.07 6.22 6.22 Total: -1.00 -35.81 412.62 -10.41 -46.22 By element: Atomic # 1 Polarization: 17.88 SS G_CDS: -7.65 Total: 10.22 kcal Atomic # 6 Polarization: 1.05 SS G_CDS: -3.17 Total: -2.12 kcal Atomic # 7 Polarization: -52.55 SS G_CDS: -0.95 Total: -53.50 kcal Atomic # 8 Polarization: -23.53 SS G_CDS: 0.18 Total: -23.35 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -35.81 -10.41 -46.22 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675322604.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.474 kcal (2) G-P(sol) polarization free energy of solvation -35.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds