Wall clock time and date at job start Wed Apr 1 2020 03:52:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.47663 * 2 1 4 4 N 1.46507 * 109.46985 * 239.99850 * 2 1 3 5 5 C 1.34777 * 119.99688 * 85.00062 * 4 2 1 6 6 O 1.21286 * 120.00309 * 0.02562 * 5 4 2 7 7 C 1.50695 * 120.00058 * 179.97438 * 5 4 2 8 8 C 1.50704 * 109.47235 * 179.97438 * 7 5 4 9 9 C 1.38239 * 119.99426 * 90.00623 * 8 7 5 10 10 C 1.38238 * 119.99750 * 179.97438 * 9 8 7 11 11 C 1.38240 * 119.99754 * 0.08668 * 10 9 8 12 12 C 1.38227 * 120.00144 * 359.86997 * 11 10 9 13 13 C 1.38230 * 120.00475 * 269.98178 * 8 7 5 14 14 C 1.53000 * 109.47396 * 120.00508 * 2 1 3 15 15 C 1.53936 * 113.73041 * 281.72829 * 14 2 1 16 16 N 1.47954 * 86.18097 * 221.91852 * 15 14 2 17 17 C 1.46900 * 111.00265 * 137.58455 * 16 15 14 18 18 C 1.50702 * 109.47367 * 90.63911 * 17 16 15 19 19 O 1.21291 * 119.99646 * 0.02562 * 18 17 16 20 20 N 1.34780 * 119.99728 * 180.02562 * 18 17 16 21 21 C 1.37091 * 119.99512 * 179.97438 * 20 18 17 22 22 H 1.08000 * 120.00604 * 0.02562 * 21 20 18 23 23 C 1.38949 * 119.99929 * 180.02562 * 21 20 18 24 24 N 1.31404 * 119.99979 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 120.00080 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47301 * 359.97438 * 25 23 21 27 27 H 1.48504 * 109.47154 * 119.99977 * 25 23 21 28 28 H 1.48501 * 109.47170 * 239.99957 * 25 23 21 29 29 C 1.47963 * 90.76409 * 24.68901 * 16 15 14 30 30 H 1.09004 * 109.46891 * 300.04780 * 1 2 3 31 31 H 1.08996 * 109.47279 * 60.04692 * 1 2 3 32 32 H 1.08997 * 109.47692 * 180.02562 * 1 2 3 33 33 H 0.96996 * 120.00194 * 265.00067 * 4 2 1 34 34 H 1.09002 * 109.47138 * 60.00650 * 7 5 4 35 35 H 1.08994 * 109.47616 * 300.00694 * 7 5 4 36 36 H 1.07995 * 120.00264 * 359.69727 * 9 8 7 37 37 H 1.07999 * 119.99919 * 179.97438 * 10 9 8 38 38 H 1.08002 * 119.99929 * 179.97438 * 11 10 9 39 39 H 1.08000 * 120.00203 * 180.02562 * 12 11 10 40 40 H 1.08003 * 119.99529 * 359.97438 * 13 8 7 41 41 H 1.09004 * 112.93979 * 53.43096 * 14 2 1 42 42 H 1.09000 * 113.76146 * 336.23653 * 15 14 2 43 43 H 1.08999 * 113.76215 * 107.59946 * 15 14 2 44 44 H 1.09003 * 109.47451 * 210.64568 * 17 16 15 45 45 H 1.09002 * 109.46684 * 330.63448 * 17 16 15 46 46 H 0.96997 * 120.00133 * 0.02562 * 20 18 17 47 47 H 0.97001 * 120.00435 * 180.02562 * 24 23 21 48 48 H 1.09002 * 113.75890 * 220.99300 * 29 16 15 49 49 H 1.09000 * 113.85931 * 89.63813 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1962 5 6 2.1470 -0.0183 -2.3572 6 8 1.8590 1.1586 -2.4116 7 6 2.6498 -0.7285 -3.5875 8 6 2.6998 0.2397 -4.7413 9 6 3.8470 0.9736 -4.9784 10 6 3.8931 1.8614 -6.0371 11 6 2.7913 2.0165 -6.8575 12 6 1.6445 1.2819 -6.6209 13 6 1.5987 0.3935 -5.5628 14 6 2.0400 -0.7213 1.2492 15 6 1.9765 0.1337 2.5276 16 7 3.3109 -0.4204 2.8459 17 6 4.2040 0.6234 3.3663 18 6 4.0865 0.6825 4.8676 19 8 3.3333 -0.0712 5.4470 20 7 4.8185 1.5728 5.5663 21 6 4.7112 1.6268 6.9319 22 1 4.0405 0.9558 7.4479 23 6 5.4653 2.5450 7.6522 24 7 6.2817 3.3612 7.0245 25 14 5.3197 2.6182 9.5131 26 1 4.3402 1.6013 9.9734 27 1 6.6446 2.3423 10.1245 28 1 4.8582 3.9695 9.9207 29 6 3.5700 -0.6731 1.4112 30 1 -0.3633 0.5146 0.8896 31 1 -0.3633 0.5131 -0.8904 32 1 -0.3634 -1.0276 0.0005 33 1 2.2490 -1.6318 -1.1527 34 1 1.9775 -1.5507 -3.8326 35 1 3.6490 -1.1204 -3.3980 36 1 4.7056 0.8568 -4.3339 37 1 4.7892 2.4351 -6.2221 38 1 2.8271 2.7103 -7.6843 39 1 0.7839 1.4027 -7.2621 40 1 0.7027 -0.1805 -5.3779 41 1 1.6178 -1.7195 1.3655 42 1 1.9804 1.2072 2.3387 43 1 1.1959 -0.1739 3.2234 44 1 5.2330 0.3917 3.0911 45 1 3.9227 1.5871 2.9416 46 1 5.4205 2.1758 5.1028 47 1 6.8085 4.0020 7.5273 48 1 4.0627 -1.6254 1.2150 49 1 4.0402 0.1634 0.8941 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001675322604.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:52:01 Heat of formation + Delta-G solvation = -41.667848 kcal Electronic energy + Delta-G solvation = -28909.493072 eV Core-core repulsion = 24836.150917 eV Total energy + Delta-G solvation = -4073.342155 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.59544 -40.78583 -39.78767 -39.36216 -36.34889 -35.88872 -33.90124 -33.31640 -32.39048 -31.73512 -30.69346 -28.41300 -27.43329 -26.98815 -25.64198 -23.44966 -23.43529 -22.22466 -21.38321 -20.99430 -20.56299 -19.90133 -18.11664 -17.86177 -17.71878 -17.25346 -16.75076 -16.57397 -16.48278 -16.25924 -15.99690 -15.64402 -15.50483 -15.37877 -14.90967 -14.71321 -14.26303 -14.18622 -14.05125 -13.88940 -13.70429 -13.54026 -13.47727 -13.33649 -12.99505 -12.88997 -12.83717 -12.44910 -12.41527 -12.13529 -12.00998 -11.87335 -11.84735 -11.82258 -11.59881 -11.51104 -10.88382 -10.38813 -10.08734 -10.02282 -9.77028 -9.63977 -9.57720 -8.47811 -5.96800 0.45205 0.55121 1.35570 1.40380 1.55023 1.72532 2.04304 2.20352 2.27728 2.77293 2.95934 3.18184 3.35166 3.44574 3.66825 3.73982 3.98663 4.04165 4.16189 4.17349 4.19315 4.21888 4.30455 4.35241 4.39328 4.44539 4.48688 4.50775 4.53539 4.64177 4.68695 4.76868 4.80143 4.81803 4.83300 4.99800 5.16559 5.19233 5.20633 5.33786 5.39232 5.43019 5.56533 5.59550 5.65837 5.69757 5.89319 6.07901 6.16188 6.59392 6.65763 7.11926 7.36336 7.55219 8.11518 8.69973 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.018762 B = 0.001723 C = 0.001632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.020896 B =16249.462973 C =17153.611350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.159 3.841 3 H 0.063 0.937 4 N -0.710 5.710 5 C 0.513 3.487 6 O -0.581 6.581 7 C -0.097 4.097 8 C -0.080 4.080 9 C -0.124 4.124 10 C -0.134 4.134 11 C -0.134 4.134 12 C -0.132 4.132 13 C -0.122 4.122 14 C -0.097 4.097 15 C 0.013 3.987 16 N -0.481 5.481 17 C 0.023 3.977 18 C 0.442 3.558 19 O -0.617 6.617 20 N -0.577 5.577 21 C -0.333 4.333 22 H 0.078 0.922 23 C -0.015 4.015 24 N -0.922 5.922 25 Si 0.994 3.006 26 H -0.273 1.273 27 H -0.270 1.270 28 H -0.271 1.271 29 C 0.013 3.987 30 H 0.064 0.936 31 H 0.045 0.955 32 H 0.075 0.925 33 H 0.418 0.582 34 H 0.130 0.870 35 H 0.128 0.872 36 H 0.127 0.873 37 H 0.134 0.866 38 H 0.137 0.863 39 H 0.137 0.863 40 H 0.131 0.869 41 H 0.122 0.878 42 H 0.068 0.932 43 H 0.076 0.924 44 H 0.106 0.894 45 H 0.073 0.927 46 H 0.395 0.605 47 H 0.277 0.723 48 H 0.108 0.892 49 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.565 -8.546 -29.410 31.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.053 3.947 3 H 0.081 0.919 4 N -0.362 5.362 5 C 0.301 3.699 6 O -0.461 6.461 7 C -0.136 4.136 8 C -0.080 4.080 9 C -0.142 4.142 10 C -0.152 4.152 11 C -0.152 4.152 12 C -0.150 4.150 13 C -0.140 4.140 14 C -0.116 4.116 15 C -0.117 4.117 16 N -0.204 5.204 17 C -0.108 4.108 18 C 0.229 3.771 19 O -0.503 6.503 20 N -0.215 5.215 21 C -0.463 4.463 22 H 0.096 0.904 23 C -0.214 4.214 24 N -0.563 5.563 25 Si 0.818 3.182 26 H -0.198 1.198 27 H -0.195 1.195 28 H -0.196 1.196 29 C -0.115 4.115 30 H 0.083 0.917 31 H 0.064 0.936 32 H 0.094 0.906 33 H 0.255 0.745 34 H 0.148 0.852 35 H 0.146 0.854 36 H 0.145 0.855 37 H 0.152 0.848 38 H 0.155 0.845 39 H 0.155 0.845 40 H 0.149 0.851 41 H 0.140 0.860 42 H 0.086 0.914 43 H 0.095 0.905 44 H 0.124 0.876 45 H 0.091 0.909 46 H 0.229 0.771 47 H 0.087 0.913 48 H 0.126 0.874 49 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -7.056 -8.598 -28.489 30.583 hybrid contribution 0.478 1.198 0.533 1.395 sum -6.577 -7.400 -27.955 29.657 Atomic orbital electron populations 1.22082 0.94537 1.03067 1.01821 1.20783 0.94500 0.95989 0.83386 0.91883 1.45897 1.66988 1.14815 1.08546 1.21048 0.76758 0.86887 0.85182 1.90736 1.51508 1.18232 1.85599 1.20744 1.05969 0.97860 0.89012 1.19570 0.94297 0.98105 0.96050 1.21265 0.98384 0.96612 0.97927 1.21414 0.99452 0.98666 0.95622 1.21452 0.93537 0.99891 1.00275 1.21418 0.98797 0.96576 0.98218 1.21263 0.98059 0.99245 0.95407 1.23127 0.95657 1.00791 0.92026 1.23954 0.93298 0.98013 0.96427 1.68347 1.02425 1.33079 1.16506 1.22346 1.00460 0.96248 0.91784 1.20799 0.83247 0.82617 0.90388 1.90477 1.42472 1.44892 1.72442 1.41975 1.39173 1.33368 1.06971 1.19701 1.24444 1.19046 0.83070 0.90388 1.26061 0.95284 0.95048 1.05022 1.69678 1.26559 1.21805 1.38251 0.84853 0.78349 0.78269 0.76746 1.19785 1.19489 1.19591 1.24053 0.96570 1.03244 0.87643 0.91659 0.93585 0.90572 0.74498 0.85167 0.85418 0.85474 0.84790 0.84516 0.84501 0.85104 0.86009 0.91416 0.90545 0.87607 0.90860 0.77130 0.91312 0.87399 0.90850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.67 9.44 71.98 0.68 -1.99 16 2 C 0.16 2.78 2.29 44.99 0.10 2.88 16 3 H 0.06 1.47 7.48 -2.39 -0.02 1.46 16 4 N -0.71 -9.05 4.94 -442.53 -2.19 -11.23 16 5 C 0.51 8.80 7.79 87.66 0.68 9.48 16 6 O -0.58 -16.15 15.70 -3.05 -0.05 -16.20 16 7 C -0.10 -0.99 5.83 29.10 0.17 -0.82 16 8 C -0.08 -1.28 4.37 -19.86 -0.09 -1.37 16 9 C -0.12 -2.10 9.70 22.27 0.22 -1.89 16 10 C -0.13 -2.17 10.05 22.27 0.22 -1.95 16 11 C -0.13 -2.05 10.05 22.27 0.22 -1.83 16 12 C -0.13 -2.03 10.05 22.27 0.22 -1.81 16 13 C -0.12 -1.95 9.70 22.27 0.22 -1.73 16 14 C -0.10 -1.77 3.35 -10.15 -0.03 -1.81 16 15 C 0.01 0.35 7.41 86.41 0.64 0.99 16 16 N -0.48 -15.19 5.65 -912.41 -5.15 -20.35 16 17 C 0.02 0.83 5.28 85.56 0.45 1.28 16 18 C 0.44 21.84 7.83 87.66 0.69 22.52 16 19 O -0.62 -35.45 16.01 -3.06 -0.05 -35.50 16 20 N -0.58 -30.57 5.29 -306.98 -1.62 -32.19 16 21 C -0.33 -19.40 9.68 84.04 0.81 -18.58 16 22 H 0.08 4.85 7.16 -2.91 -0.02 4.83 16 23 C -0.01 -0.80 5.50 84.93 0.47 -0.33 16 24 N -0.92 -50.68 13.05 21.66 0.28 -50.40 16 25 Si 0.99 43.69 29.55 68.60 2.03 45.72 16 26 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 27 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 28 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 29 C 0.01 0.27 7.38 86.40 0.64 0.91 16 30 H 0.06 1.16 8.09 -2.38 -0.02 1.14 16 31 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.42 2.52 8.60 -92.71 -0.80 1.72 16 34 H 0.13 0.60 8.08 -2.39 -0.02 0.58 16 35 H 0.13 0.69 8.09 -2.39 -0.02 0.68 16 36 H 0.13 1.82 8.06 -2.91 -0.02 1.80 16 37 H 0.13 1.67 8.06 -2.91 -0.02 1.64 16 38 H 0.14 1.48 8.06 -2.91 -0.02 1.46 16 39 H 0.14 1.50 8.06 -2.91 -0.02 1.47 16 40 H 0.13 1.62 8.06 -2.91 -0.02 1.60 16 41 H 0.12 1.90 8.14 -2.38 -0.02 1.88 16 42 H 0.07 1.87 7.36 -2.39 -0.02 1.85 16 43 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 44 H 0.11 3.34 8.08 -2.39 -0.02 3.32 16 45 H 0.07 2.36 7.38 -2.39 -0.02 2.35 16 46 H 0.40 19.89 7.90 -92.71 -0.73 19.15 16 47 H 0.28 14.21 8.31 -92.71 -0.77 13.44 16 48 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 49 H 0.07 1.46 7.88 -2.39 -0.02 1.44 16 Total: -1.00 -80.04 412.62 -1.00 -81.04 By element: Atomic # 1 Polarization: 35.71 SS G_CDS: -0.56 Total: 35.15 kcal Atomic # 6 Polarization: -2.35 SS G_CDS: 6.31 Total: 3.96 kcal Atomic # 7 Polarization: -105.49 SS G_CDS: -8.68 Total: -114.17 kcal Atomic # 8 Polarization: -51.60 SS G_CDS: -0.10 Total: -51.70 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Total: -80.04 -1.00 -81.04 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675322604.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.377 kcal (2) G-P(sol) polarization free energy of solvation -80.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds