Wall clock time and date at job start Wed Apr 1 2020 04:14:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08992 * 109.47210 * 2 1 4 4 C 1.52996 * 109.46644 * 240.00024 * 2 1 3 5 5 C 1.53009 * 109.46924 * 174.99916 * 4 2 1 6 6 C 1.52996 * 109.46924 * 180.02562 * 5 4 2 7 7 N 1.46504 * 109.46681 * 179.97438 * 6 5 4 8 8 C 1.36943 * 119.99781 * 180.02562 * 7 6 5 9 9 H 1.08002 * 119.99788 * 359.97438 * 8 7 6 10 10 C 1.38811 * 119.99622 * 180.27904 * 8 7 6 11 11 N 1.31614 * 120.00467 * 359.72375 * 10 8 7 12 12 Si 1.86801 * 119.99700 * 179.72266 * 10 8 7 13 13 H 1.48501 * 109.46896 * 89.99850 * 12 10 8 14 14 H 1.48499 * 109.47039 * 210.00011 * 12 10 8 15 15 H 1.48501 * 109.47275 * 329.99811 * 12 10 8 16 16 N 1.46500 * 109.47009 * 120.00499 * 2 1 3 17 17 C 1.34781 * 119.99688 * 274.99517 * 16 2 1 18 18 O 1.21280 * 120.00158 * 0.02562 * 17 16 2 19 19 C 1.50703 * 119.99566 * 180.02562 * 17 16 2 20 20 C 1.53001 * 109.46547 * 180.02562 * 19 17 16 21 21 H 1.09001 * 110.45766 * 56.15614 * 20 19 17 22 22 C 1.51143 * 110.50563 * 178.90162 * 20 19 17 23 23 C 1.37679 * 132.84856 * 298.64042 * 22 20 19 24 24 C 1.38401 * 119.91098 * 180.02562 * 23 22 20 25 25 C 1.38298 * 119.82547 * 0.02562 * 24 23 22 26 26 C 1.37946 * 120.37952 * 359.97438 * 25 24 23 27 27 C 1.38899 * 106.34215 * 118.64951 * 22 20 19 28 28 N 1.39536 * 110.22989 * 359.97438 * 27 22 20 29 29 C 1.34367 * 112.24485 * 0.02562 * 28 27 22 30 30 O 1.21283 * 126.44178 * 179.97438 * 29 28 27 31 31 H 1.09001 * 109.47086 * 299.99483 * 1 2 3 32 32 H 1.08992 * 109.47419 * 59.99335 * 1 2 3 33 33 H 1.08992 * 109.47210 * 180.02562 * 1 2 3 34 34 H 1.09006 * 109.47179 * 55.00474 * 4 2 1 35 35 H 1.08997 * 109.47540 * 294.99936 * 4 2 1 36 36 H 1.08998 * 109.46895 * 60.00008 * 5 4 2 37 37 H 1.08997 * 109.47029 * 300.00333 * 5 4 2 38 38 H 1.09006 * 109.47179 * 60.00557 * 6 5 4 39 39 H 1.08997 * 109.47540 * 300.00020 * 6 5 4 40 40 H 0.97000 * 120.00410 * 0.02562 * 7 6 5 41 41 H 0.96995 * 120.00147 * 180.02562 * 11 10 8 42 42 H 0.96999 * 120.00124 * 94.99880 * 16 2 1 43 43 H 1.08998 * 109.47229 * 300.00236 * 19 17 16 44 44 H 1.08993 * 109.46880 * 60.00288 * 19 17 16 45 45 H 1.07991 * 120.04684 * 359.97438 * 23 22 20 46 46 H 1.07991 * 120.08763 * 180.02562 * 24 23 22 47 47 H 1.08004 * 119.81031 * 180.02562 * 25 24 23 48 48 H 1.07994 * 119.93660 * 180.02562 * 26 25 24 49 49 H 0.96995 * 123.87461 * 180.02562 * 28 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5648 -0.6133 -1.3138 6 6 4.0746 -1.3340 -2.5634 7 7 5.5347 -1.2301 -2.6254 8 6 6.2183 -1.8033 -3.6643 9 1 5.6812 -2.3324 -4.4376 10 6 7.6022 -1.7098 -3.7200 11 7 8.2568 -1.0656 -2.7773 12 14 8.5354 -2.4984 -5.1331 13 1 8.6728 -1.5207 -6.2423 14 1 9.8836 -2.9109 -4.6668 15 1 7.7916 -3.6906 -5.6134 16 7 2.0183 -0.6907 1.1961 17 6 2.1471 -0.0184 2.3571 18 8 1.8583 1.1583 2.4118 19 6 2.6500 -0.7288 3.5874 20 6 2.7008 0.2542 4.7588 21 1 1.7223 0.7070 4.9189 22 6 3.1772 -0.4413 6.0133 23 6 2.6747 -1.4895 6.7511 24 6 3.3444 -1.9203 7.8831 25 6 4.5163 -1.2952 8.2686 26 6 5.0219 -0.2448 7.5312 27 6 4.3536 0.1941 6.3897 28 7 4.6576 1.2179 5.4917 29 6 3.7455 1.3214 4.5105 30 8 3.7567 2.1199 3.5977 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8898 33 1 -0.3633 -1.0276 0.0005 34 1 1.6053 -0.2616 -2.1370 35 1 1.7516 -1.7715 -1.2056 36 1 3.9994 -1.0728 -0.4261 37 1 3.8532 0.4369 -1.3574 38 1 3.6400 -0.8740 -3.4509 39 1 3.7863 -2.3842 -2.5202 40 1 6.0171 -0.7552 -1.9307 41 1 9.2237 -1.0000 -2.8165 42 1 2.2490 -1.6319 1.1525 43 1 1.9778 -1.5511 3.8324 44 1 3.6492 -1.1205 3.3977 45 1 1.7587 -1.9743 6.4475 46 1 2.9530 -2.7424 8.4637 47 1 5.0389 -1.6319 9.1518 48 1 5.9378 0.2379 7.8385 49 1 5.4378 1.7892 5.5671 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001676029837.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:14:28 Heat of formation + Delta-G solvation = -37.554840 kcal Electronic energy + Delta-G solvation = -29485.485550 eV Core-core repulsion = 25412.321748 eV Total energy + Delta-G solvation = -4073.163802 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.91252 -39.71827 -38.54011 -36.72143 -35.84971 -34.79108 -33.79856 -32.52356 -31.26111 -30.39455 -29.46810 -29.16577 -26.41331 -25.56793 -23.07761 -22.92459 -21.85220 -21.65383 -20.80558 -20.59622 -20.15977 -18.16285 -17.51044 -16.99272 -16.79255 -16.39523 -16.10600 -15.96778 -15.15836 -14.77289 -14.65344 -14.41731 -14.34570 -14.12219 -13.88921 -13.56027 -13.45500 -13.31696 -13.17475 -12.95018 -12.84022 -12.50849 -12.36600 -12.09099 -12.02435 -11.97147 -11.27927 -11.25947 -11.09324 -11.08079 -10.83334 -10.75995 -10.42036 -10.35518 -10.14487 -9.97659 -9.72669 -9.65163 -9.26858 -8.97230 -8.83322 -8.34973 -6.88027 -5.72833 -3.01524 0.81741 0.92137 2.32669 2.70152 2.76977 3.14725 3.42160 3.45380 3.49899 3.51953 3.81838 4.04074 4.42248 4.52151 4.59782 4.63629 4.74614 4.83416 4.92875 4.95276 5.04267 5.11747 5.20870 5.23229 5.26379 5.48027 5.50342 5.54029 5.60767 5.63722 5.69201 5.74162 5.86234 5.98226 6.03116 6.09572 6.11875 6.18957 6.27626 6.29333 6.41256 6.46061 6.55565 6.59942 6.69024 6.91845 6.94972 7.54204 7.72550 7.85986 8.30869 8.46195 9.56776 10.16500 10.50784 11.50200 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.009797 B = 0.002321 C = 0.002029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2857.191741 B =12063.366631 C =13793.550412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.142 3.858 3 H 0.088 0.912 4 C -0.122 4.122 5 C -0.125 4.125 6 C 0.153 3.847 7 N -0.735 5.735 8 C -0.239 4.239 9 H 0.070 0.930 10 C -0.016 4.016 11 N -0.934 5.934 12 Si 0.907 3.093 13 H -0.290 1.290 14 H -0.291 1.291 15 H -0.282 1.282 16 N -0.723 5.723 17 C 0.505 3.495 18 O -0.513 6.513 19 C -0.120 4.120 20 C -0.062 4.062 21 H 0.129 0.871 22 C -0.143 4.143 23 C -0.062 4.062 24 C -0.145 4.145 25 C -0.083 4.083 26 C -0.143 4.143 27 C 0.153 3.847 28 N -0.668 5.668 29 C 0.526 3.474 30 O -0.458 6.458 31 H 0.057 0.943 32 H 0.064 0.936 33 H 0.054 0.946 34 H 0.077 0.923 35 H 0.066 0.934 36 H 0.060 0.940 37 H 0.061 0.939 38 H 0.017 0.983 39 H 0.016 0.984 40 H 0.383 0.617 41 H 0.255 0.745 42 H 0.399 0.601 43 H 0.107 0.893 44 H 0.099 0.901 45 H 0.129 0.871 46 H 0.129 0.871 47 H 0.130 0.870 48 H 0.126 0.874 49 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.503 -2.024 25.114 29.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.038 3.962 3 H 0.107 0.893 4 C -0.160 4.160 5 C -0.163 4.163 6 C 0.025 3.975 7 N -0.379 5.379 8 C -0.370 4.370 9 H 0.088 0.912 10 C -0.212 4.212 11 N -0.583 5.583 12 Si 0.738 3.262 13 H -0.217 1.217 14 H -0.218 1.218 15 H -0.208 1.208 16 N -0.376 5.376 17 C 0.290 3.710 18 O -0.387 6.387 19 C -0.161 4.161 20 C -0.084 4.084 21 H 0.146 0.854 22 C -0.146 4.146 23 C -0.080 4.080 24 C -0.164 4.164 25 C -0.101 4.101 26 C -0.165 4.165 27 C 0.055 3.945 28 N -0.312 5.312 29 C 0.311 3.689 30 O -0.326 6.326 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.074 0.926 34 H 0.096 0.904 35 H 0.085 0.915 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.035 0.965 39 H 0.034 0.966 40 H 0.217 0.783 41 H 0.065 0.935 42 H 0.233 0.767 43 H 0.125 0.875 44 H 0.117 0.883 45 H 0.147 0.853 46 H 0.147 0.853 47 H 0.147 0.853 48 H 0.144 0.856 49 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -15.778 -0.772 24.345 29.021 hybrid contribution 1.430 -0.504 -0.453 1.583 sum -14.348 -1.276 23.891 27.898 Atomic orbital electron populations 1.22157 0.95598 1.01799 1.02322 1.21009 0.93434 0.97896 0.83900 0.89345 1.21842 0.96837 1.00666 0.96697 1.21721 0.93699 1.01467 0.99390 1.20652 0.86155 0.96390 0.94265 1.42397 1.00253 1.66285 1.28947 1.19249 0.89425 1.27085 1.01235 0.91216 1.24758 0.96456 1.01324 0.98656 1.69666 1.07142 1.47108 1.34371 0.86181 0.79366 0.78836 0.81772 1.21718 1.21778 1.20780 1.46039 1.67910 1.13980 1.09679 1.20406 0.78486 0.87558 0.84596 1.90800 1.48233 1.14976 1.84726 1.21467 1.04455 0.98459 0.91702 1.20393 1.01059 0.94624 0.92334 0.85365 1.19795 0.96933 0.99561 0.98316 1.20291 0.99440 0.94413 0.93876 1.21062 0.96370 1.01392 0.97599 1.20901 0.95763 0.94513 0.98951 1.20404 1.01398 0.99967 0.94680 1.18202 0.94970 0.89669 0.91637 1.43906 1.27522 1.33604 1.26199 1.20474 0.82583 0.84946 0.80871 1.90927 1.74264 1.37658 1.29789 0.92383 0.91690 0.92648 0.90392 0.91506 0.92145 0.91981 0.96526 0.96605 0.78340 0.93546 0.76704 0.87469 0.88287 0.85340 0.85329 0.85251 0.85589 0.74928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.66 9.48 37.16 0.35 -1.31 16 2 C 0.14 1.73 2.57 -67.93 -0.17 1.55 16 3 H 0.09 1.33 7.58 -51.93 -0.39 0.93 16 4 C -0.12 -1.52 4.75 -26.73 -0.13 -1.65 16 5 C -0.12 -2.08 5.22 -26.73 -0.14 -2.22 16 6 C 0.15 3.17 6.26 -4.04 -0.03 3.14 16 7 N -0.73 -19.52 5.60 -59.91 -0.34 -19.86 16 8 C -0.24 -6.93 9.99 -15.06 -0.15 -7.08 16 9 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 10 C -0.02 -0.48 5.50 -17.43 -0.10 -0.58 16 11 N -0.93 -29.17 13.06 55.49 0.72 -28.44 16 12 Si 0.91 22.90 29.55 -169.99 -5.02 17.88 16 13 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 14 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 15 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 16 N -0.72 -8.11 4.53 -53.81 -0.24 -8.36 16 17 C 0.50 6.37 7.47 -10.98 -0.08 6.29 16 18 O -0.51 -8.56 13.28 -17.23 -0.23 -8.79 16 19 C -0.12 -1.10 5.24 -27.88 -0.15 -1.24 16 20 C -0.06 -0.62 2.63 -92.37 -0.24 -0.87 16 21 H 0.13 1.27 8.02 -51.93 -0.42 0.85 16 22 C -0.14 -1.19 5.67 -104.36 -0.59 -1.78 16 23 C -0.06 -0.39 10.04 -39.73 -0.40 -0.79 16 24 C -0.15 -0.81 10.07 -39.50 -0.40 -1.20 16 25 C -0.08 -0.47 10.01 -39.67 -0.40 -0.87 16 26 C -0.14 -0.99 10.07 -39.27 -0.40 -1.38 16 27 C 0.15 1.34 7.11 -83.69 -0.60 0.74 16 28 N -0.67 -6.68 5.88 -9.70 -0.06 -6.74 16 29 C 0.53 6.85 7.81 -10.83 -0.08 6.77 16 30 O -0.46 -8.09 15.54 -17.23 -0.27 -8.36 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.06 1.02 7.75 -51.93 -0.40 0.62 16 37 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 40 H 0.38 10.77 7.67 -40.82 -0.31 10.46 16 41 H 0.25 7.66 8.31 -40.82 -0.34 7.32 16 42 H 0.40 3.60 8.60 -40.82 -0.35 3.25 16 43 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 45 H 0.13 0.54 8.06 -52.49 -0.42 0.12 16 46 H 0.13 0.44 8.06 -52.49 -0.42 0.02 16 47 H 0.13 0.45 8.06 -52.48 -0.42 0.03 16 48 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 49 H 0.41 3.41 8.96 -40.82 -0.37 3.04 16 LS Contribution 407.04 15.07 6.13 6.13 Total: -1.00 -37.66 407.04 -10.70 -48.36 By element: Atomic # 1 Polarization: 18.33 SS G_CDS: -7.71 Total: 10.62 kcal Atomic # 6 Polarization: 1.23 SS G_CDS: -3.69 Total: -2.46 kcal Atomic # 7 Polarization: -63.48 SS G_CDS: 0.09 Total: -63.40 kcal Atomic # 8 Polarization: -16.65 SS G_CDS: -0.50 Total: -17.14 kcal Atomic # 14 Polarization: 22.90 SS G_CDS: -5.02 Total: 17.88 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -37.66 -10.70 -48.36 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676029837.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.803 kcal (2) G-P(sol) polarization free energy of solvation -37.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds