Wall clock time and date at job start Wed Apr 1 2020 04:14:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08992 * 109.47210 * 2 1 4 4 C 1.52996 * 109.46644 * 240.00024 * 2 1 3 5 5 C 1.53009 * 109.46924 * 174.99916 * 4 2 1 6 6 C 1.52996 * 109.46924 * 180.02562 * 5 4 2 7 7 N 1.46504 * 109.46681 * 179.97438 * 6 5 4 8 8 C 1.36943 * 119.99781 * 180.02562 * 7 6 5 9 9 H 1.08002 * 119.99788 * 359.97438 * 8 7 6 10 10 C 1.38811 * 119.99622 * 180.27904 * 8 7 6 11 11 N 1.31614 * 120.00467 * 359.72375 * 10 8 7 12 12 Si 1.86801 * 119.99700 * 179.72266 * 10 8 7 13 13 H 1.48501 * 109.46896 * 89.99850 * 12 10 8 14 14 H 1.48499 * 109.47039 * 210.00011 * 12 10 8 15 15 H 1.48501 * 109.47275 * 329.99811 * 12 10 8 16 16 N 1.46500 * 109.47009 * 120.00499 * 2 1 3 17 17 C 1.34781 * 119.99688 * 274.99517 * 16 2 1 18 18 O 1.21280 * 120.00158 * 0.02562 * 17 16 2 19 19 C 1.50703 * 119.99566 * 180.02562 * 17 16 2 20 20 C 1.53001 * 109.46547 * 180.02562 * 19 17 16 21 21 H 1.09001 * 110.45766 * 56.15614 * 20 19 17 22 22 C 1.51143 * 110.50563 * 178.90162 * 20 19 17 23 23 C 1.37679 * 132.84856 * 298.64042 * 22 20 19 24 24 C 1.38401 * 119.91098 * 180.02562 * 23 22 20 25 25 C 1.38298 * 119.82547 * 0.02562 * 24 23 22 26 26 C 1.37946 * 120.37952 * 359.97438 * 25 24 23 27 27 C 1.38899 * 106.34215 * 118.64951 * 22 20 19 28 28 N 1.39536 * 110.22989 * 359.97438 * 27 22 20 29 29 C 1.34367 * 112.24485 * 0.02562 * 28 27 22 30 30 O 1.21283 * 126.44178 * 179.97438 * 29 28 27 31 31 H 1.09001 * 109.47086 * 299.99483 * 1 2 3 32 32 H 1.08992 * 109.47419 * 59.99335 * 1 2 3 33 33 H 1.08992 * 109.47210 * 180.02562 * 1 2 3 34 34 H 1.09006 * 109.47179 * 55.00474 * 4 2 1 35 35 H 1.08997 * 109.47540 * 294.99936 * 4 2 1 36 36 H 1.08998 * 109.46895 * 60.00008 * 5 4 2 37 37 H 1.08997 * 109.47029 * 300.00333 * 5 4 2 38 38 H 1.09006 * 109.47179 * 60.00557 * 6 5 4 39 39 H 1.08997 * 109.47540 * 300.00020 * 6 5 4 40 40 H 0.97000 * 120.00410 * 0.02562 * 7 6 5 41 41 H 0.96995 * 120.00147 * 180.02562 * 11 10 8 42 42 H 0.96999 * 120.00124 * 94.99880 * 16 2 1 43 43 H 1.08998 * 109.47229 * 300.00236 * 19 17 16 44 44 H 1.08993 * 109.46880 * 60.00288 * 19 17 16 45 45 H 1.07991 * 120.04684 * 359.97438 * 23 22 20 46 46 H 1.07991 * 120.08763 * 180.02562 * 24 23 22 47 47 H 1.08004 * 119.81031 * 180.02562 * 25 24 23 48 48 H 1.07994 * 119.93660 * 180.02562 * 26 25 24 49 49 H 0.96995 * 123.87461 * 180.02562 * 28 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5648 -0.6133 -1.3138 6 6 4.0746 -1.3340 -2.5634 7 7 5.5347 -1.2301 -2.6254 8 6 6.2183 -1.8033 -3.6643 9 1 5.6812 -2.3324 -4.4376 10 6 7.6022 -1.7098 -3.7200 11 7 8.2568 -1.0656 -2.7773 12 14 8.5354 -2.4984 -5.1331 13 1 8.6728 -1.5207 -6.2423 14 1 9.8836 -2.9109 -4.6668 15 1 7.7916 -3.6906 -5.6134 16 7 2.0183 -0.6907 1.1961 17 6 2.1471 -0.0184 2.3571 18 8 1.8583 1.1583 2.4118 19 6 2.6500 -0.7288 3.5874 20 6 2.7008 0.2542 4.7588 21 1 1.7223 0.7070 4.9189 22 6 3.1772 -0.4413 6.0133 23 6 2.6747 -1.4895 6.7511 24 6 3.3444 -1.9203 7.8831 25 6 4.5163 -1.2952 8.2686 26 6 5.0219 -0.2448 7.5312 27 6 4.3536 0.1941 6.3897 28 7 4.6576 1.2179 5.4917 29 6 3.7455 1.3214 4.5105 30 8 3.7567 2.1199 3.5977 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8898 33 1 -0.3633 -1.0276 0.0005 34 1 1.6053 -0.2616 -2.1370 35 1 1.7516 -1.7715 -1.2056 36 1 3.9994 -1.0728 -0.4261 37 1 3.8532 0.4369 -1.3574 38 1 3.6400 -0.8740 -3.4509 39 1 3.7863 -2.3842 -2.5202 40 1 6.0171 -0.7552 -1.9307 41 1 9.2237 -1.0000 -2.8165 42 1 2.2490 -1.6319 1.1525 43 1 1.9778 -1.5511 3.8324 44 1 3.6492 -1.1205 3.3977 45 1 1.7587 -1.9743 6.4475 46 1 2.9530 -2.7424 8.4637 47 1 5.0389 -1.6319 9.1518 48 1 5.9378 0.2379 7.8385 49 1 5.4378 1.7892 5.5671 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001676029837.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:14:27 Heat of formation + Delta-G solvation = -63.053385 kcal Electronic energy + Delta-G solvation = -29486.591249 eV Core-core repulsion = 25412.321748 eV Total energy + Delta-G solvation = -4074.269501 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.66761 -40.68283 -39.35425 -37.95988 -36.63590 -36.50274 -34.57791 -34.15957 -32.59107 -31.22983 -30.69866 -29.89853 -27.32013 -27.04933 -24.81823 -23.52897 -22.81977 -22.38433 -22.28774 -21.58911 -21.05966 -19.14775 -18.84816 -18.32308 -17.70017 -17.38425 -16.94932 -16.72512 -16.54007 -16.14711 -15.72293 -15.52825 -15.34533 -15.26840 -15.02273 -14.79233 -14.62330 -14.42955 -13.99520 -13.91244 -13.79789 -13.45538 -13.39860 -13.18778 -13.05300 -12.89696 -12.78569 -12.58502 -12.39773 -12.23824 -12.06753 -11.87645 -11.82110 -11.78697 -11.73405 -11.49398 -11.13156 -10.95572 -10.72009 -9.96806 -9.78716 -9.03484 -8.99500 -7.97536 -5.27648 0.21687 0.42764 1.45066 1.45971 1.48030 1.56485 1.75662 2.01174 2.26782 2.54220 2.88729 3.09228 3.31944 3.35951 3.63961 3.72841 3.91593 3.97755 4.05388 4.10213 4.19628 4.25641 4.29390 4.41940 4.46327 4.50649 4.58471 4.61390 4.68237 4.70271 4.82501 4.82874 4.84624 4.95259 5.00954 5.08340 5.14016 5.19316 5.32493 5.37534 5.41491 5.48202 5.50670 5.62122 5.66243 5.69802 5.82190 6.11525 6.24511 6.64838 6.97386 7.29550 7.39284 8.06464 8.28806 9.26461 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.009797 B = 0.002321 C = 0.002029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2857.191741 B =12063.366631 C =13793.550412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.144 3.856 3 H 0.051 0.949 4 C -0.108 4.108 5 C -0.112 4.112 6 C 0.151 3.849 7 N -0.752 5.752 8 C -0.247 4.247 9 H 0.079 0.921 10 C -0.081 4.081 11 N -0.974 5.974 12 Si 0.978 3.022 13 H -0.287 1.287 14 H -0.294 1.294 15 H -0.265 1.265 16 N -0.716 5.716 17 C 0.497 3.503 18 O -0.559 6.559 19 C -0.112 4.112 20 C -0.057 4.057 21 H 0.125 0.875 22 C -0.148 4.148 23 C -0.063 4.063 24 C -0.138 4.138 25 C -0.085 4.085 26 C -0.146 4.146 27 C 0.122 3.878 28 N -0.663 5.663 29 C 0.513 3.487 30 O -0.521 6.521 31 H 0.043 0.957 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.087 0.913 35 H 0.093 0.907 36 H 0.056 0.944 37 H 0.037 0.963 38 H 0.019 0.981 39 H 0.030 0.970 40 H 0.370 0.630 41 H 0.251 0.749 42 H 0.412 0.588 43 H 0.150 0.850 44 H 0.099 0.901 45 H 0.154 0.846 46 H 0.157 0.843 47 H 0.156 0.844 48 H 0.138 0.862 49 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.947 -5.388 26.183 31.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.039 3.961 3 H 0.070 0.930 4 C -0.146 4.146 5 C -0.150 4.150 6 C 0.025 3.975 7 N -0.394 5.394 8 C -0.379 4.379 9 H 0.097 0.903 10 C -0.273 4.273 11 N -0.624 5.624 12 Si 0.807 3.193 13 H -0.214 1.214 14 H -0.221 1.221 15 H -0.190 1.190 16 N -0.370 5.370 17 C 0.284 3.716 18 O -0.437 6.437 19 C -0.152 4.152 20 C -0.079 4.079 21 H 0.143 0.857 22 C -0.151 4.151 23 C -0.081 4.081 24 C -0.157 4.157 25 C -0.103 4.103 26 C -0.167 4.167 27 C 0.025 3.975 28 N -0.307 5.307 29 C 0.300 3.700 30 O -0.395 6.395 31 H 0.062 0.938 32 H 0.092 0.908 33 H 0.096 0.904 34 H 0.106 0.894 35 H 0.111 0.889 36 H 0.075 0.925 37 H 0.056 0.944 38 H 0.037 0.963 39 H 0.048 0.952 40 H 0.201 0.799 41 H 0.060 0.940 42 H 0.249 0.751 43 H 0.168 0.832 44 H 0.118 0.882 45 H 0.172 0.828 46 H 0.175 0.825 47 H 0.173 0.827 48 H 0.156 0.844 49 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -17.257 -4.211 25.446 31.033 hybrid contribution 1.860 0.511 -0.668 2.041 sum -15.397 -3.700 24.777 29.406 Atomic orbital electron populations 1.22058 0.93579 1.03130 1.02107 1.20884 0.94902 0.96078 0.84220 0.93022 1.21744 0.93239 1.02415 0.97186 1.21581 0.96809 0.99241 0.97376 1.20861 0.83115 0.97516 0.96043 1.42687 1.02612 1.66004 1.28130 1.19702 0.90023 1.26438 1.01724 0.90320 1.25676 0.97557 1.02500 1.01538 1.69842 1.07058 1.48974 1.36568 0.85067 0.77626 0.78285 0.78351 1.21440 1.22061 1.18971 1.46000 1.67345 1.14532 1.09090 1.21054 0.77687 0.87159 0.85747 1.90789 1.50281 1.17099 1.85515 1.21508 1.05202 0.98827 0.89617 1.20306 0.99769 0.94071 0.93710 0.85703 1.19792 0.96943 1.00477 0.97875 1.20622 1.00256 0.93526 0.93668 1.21481 0.95759 1.01425 0.97039 1.21295 0.95956 0.93667 0.99374 1.20687 1.01745 1.00278 0.93970 1.18488 0.96238 0.90119 0.92634 1.43853 1.27054 1.33911 1.25866 1.21065 0.83604 0.84886 0.80401 1.90880 1.76003 1.40262 1.32395 0.93766 0.90809 0.90410 0.89414 0.88868 0.92505 0.94434 0.96297 0.95230 0.79892 0.94005 0.75123 0.83220 0.88238 0.82824 0.82513 0.82681 0.84407 0.74597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.90 9.48 71.98 0.68 -2.22 16 2 C 0.14 3.47 2.57 44.99 0.12 3.59 16 3 H 0.05 1.65 7.58 -2.39 -0.02 1.63 16 4 C -0.11 -2.51 4.75 30.60 0.15 -2.37 16 5 C -0.11 -3.74 5.22 30.60 0.16 -3.58 16 6 C 0.15 6.15 6.26 86.38 0.54 6.69 16 7 N -0.75 -40.39 5.60 -343.44 -1.92 -42.31 16 8 C -0.25 -14.32 9.99 84.03 0.84 -13.48 16 9 H 0.08 4.32 7.83 -2.91 -0.02 4.29 16 10 C -0.08 -4.81 5.50 84.86 0.47 -4.34 16 11 N -0.97 -61.99 13.06 21.65 0.28 -61.71 16 12 Si 0.98 47.13 29.55 68.60 2.03 49.16 16 13 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 14 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 15 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 16 N -0.72 -15.68 4.53 -442.53 -2.00 -17.68 16 17 C 0.50 12.82 7.47 87.66 0.66 13.48 16 18 O -0.56 -19.93 13.28 18.76 0.25 -19.68 16 19 C -0.11 -1.96 5.24 29.85 0.16 -1.80 16 20 C -0.06 -1.16 2.63 -11.92 -0.03 -1.19 16 21 H 0.13 2.58 8.02 -2.39 -0.02 2.56 16 22 C -0.15 -2.28 5.67 -19.70 -0.11 -2.40 16 23 C -0.06 -0.59 10.04 22.18 0.22 -0.37 16 24 C -0.14 -1.01 10.07 22.32 0.22 -0.78 16 25 C -0.08 -0.70 10.01 22.21 0.22 -0.48 16 26 C -0.15 -1.79 10.07 22.47 0.23 -1.57 16 27 C 0.12 2.09 7.11 38.34 0.27 2.36 16 28 N -0.66 -14.26 5.88 -303.22 -1.78 -16.04 16 29 C 0.51 14.51 7.81 87.94 0.69 15.20 16 30 O -0.52 -20.38 15.54 18.75 0.29 -20.09 16 31 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.09 1.92 8.14 -2.38 -0.02 1.90 16 35 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.06 1.92 7.75 -2.39 -0.02 1.90 16 37 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.02 0.78 8.14 -2.38 -0.02 0.76 16 39 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.37 21.45 7.67 -92.71 -0.71 20.74 16 41 H 0.25 15.43 8.31 -92.71 -0.77 14.66 16 42 H 0.41 6.68 8.60 -92.71 -0.80 5.88 16 43 H 0.15 1.28 8.14 -2.39 -0.02 1.26 16 44 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 45 H 0.15 0.64 8.06 -2.92 -0.02 0.62 16 46 H 0.16 0.29 8.06 -2.92 -0.02 0.27 16 47 H 0.16 0.47 8.06 -2.91 -0.02 0.45 16 48 H 0.14 1.26 8.06 -2.91 -0.02 1.23 16 49 H 0.42 7.72 8.96 -92.71 -0.83 6.88 16 Total: -1.00 -86.03 407.04 1.26 -84.77 By element: Atomic # 1 Polarization: 38.20 SS G_CDS: -1.36 Total: 36.84 kcal Atomic # 6 Polarization: 1.27 SS G_CDS: 5.48 Total: 6.75 kcal Atomic # 7 Polarization: -132.32 SS G_CDS: -5.43 Total: -137.75 kcal Atomic # 8 Polarization: -40.31 SS G_CDS: 0.54 Total: -39.77 kcal Atomic # 14 Polarization: 47.13 SS G_CDS: 2.03 Total: 49.16 kcal Total: -86.03 1.26 -84.77 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676029837.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.715 kcal (2) G-P(sol) polarization free energy of solvation -86.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds