Wall clock time and date at job start Wed Apr 1 2020 04:20:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.47606 * 2 1 4 4 C 1.47198 * 109.47319 * 239.99899 * 2 1 3 5 5 N 2.60802 * 109.47206 * 239.99767 * 2 1 3 6 6 C 1.50707 * 109.47152 * 119.99562 * 2 1 3 7 7 O 1.21279 * 119.99716 * 119.99372 * 6 2 1 8 8 N 1.34774 * 120.00055 * 300.00382 * 6 2 1 9 9 C 1.46498 * 120.00110 * 179.97438 * 8 6 2 10 10 H 1.09001 * 109.47102 * 324.99615 * 9 8 6 11 11 C 1.52993 * 109.47185 * 84.99531 * 9 8 6 12 12 C 1.53000 * 109.47328 * 204.99827 * 9 8 6 13 13 C 1.53001 * 109.46767 * 64.99793 * 12 9 8 14 14 N 1.46898 * 109.46885 * 180.02562 * 13 12 9 15 15 C 1.46899 * 111.00270 * 180.02562 * 14 13 12 16 16 C 1.50699 * 109.47256 * 180.02562 * 15 14 13 17 17 C 1.38304 * 119.93395 * 269.72331 * 16 15 14 18 18 C 1.38094 * 120.07122 * 179.72591 * 17 16 15 19 19 C 1.38871 * 119.93197 * 0.56935 * 18 17 16 20 20 O 1.35751 * 120.07214 * 179.67867 * 19 18 17 21 21 C 1.34832 * 117.00198 * 174.48347 * 20 19 18 22 22 H 1.07995 * 119.99604 * 5.06768 * 21 20 19 23 23 C 1.38656 * 120.00020 * 185.06000 * 21 20 19 24 24 N 1.31557 * 119.99950 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 119.99856 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47009 * 60.00181 * 25 23 21 27 27 H 1.48500 * 109.46969 * 179.97438 * 25 23 21 28 28 H 1.48498 * 109.47253 * 300.00315 * 25 23 21 29 29 C 1.38886 * 119.86184 * 359.70526 * 19 18 17 30 30 C 1.38100 * 119.92986 * 359.97438 * 29 19 18 31 31 H 1.09000 * 109.47264 * 59.99792 * 1 2 3 32 32 H 1.08999 * 109.47109 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.47389 * 300.00282 * 1 2 3 34 34 H 0.97004 * 120.00096 * 359.97438 * 8 6 2 35 35 H 1.09000 * 109.47477 * 180.02562 * 11 9 8 36 36 H 1.08998 * 109.47565 * 300.00733 * 11 9 8 37 37 H 1.09001 * 109.47032 * 60.00041 * 11 9 8 38 38 H 1.08993 * 109.47255 * 184.99898 * 12 9 8 39 39 H 1.08998 * 109.46828 * 305.00132 * 12 9 8 40 40 H 1.08997 * 109.47745 * 299.99823 * 13 12 9 41 41 H 1.08998 * 109.47169 * 60.00549 * 13 12 9 42 42 H 1.00904 * 111.00447 * 303.95497 * 14 13 12 43 43 H 1.09008 * 109.47086 * 299.99668 * 15 14 13 44 44 H 1.08996 * 109.47226 * 60.00148 * 15 14 13 45 45 H 1.08008 * 119.96063 * 359.97438 * 17 16 15 46 46 H 1.08008 * 120.03437 * 180.27250 * 18 17 16 47 47 H 0.96997 * 119.99830 * 180.02562 * 24 23 21 48 48 H 1.08003 * 120.03335 * 179.97438 * 29 19 18 49 49 H 1.07998 * 119.96633 * 179.97438 * 30 29 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0207 -0.6939 -1.2018 5 7 2.3993 -1.2295 -2.1294 6 6 2.0323 -0.7103 1.2306 7 8 2.7295 -1.6965 1.1193 8 7 1.7067 -0.2499 2.4546 9 6 2.1945 -0.9407 3.6508 10 1 2.2308 -2.0135 3.4615 11 6 3.5972 -0.4359 3.9949 12 6 1.2504 -0.6612 4.8219 13 6 -0.1199 -1.2759 4.5300 14 7 -1.0266 -1.0071 5.6541 15 6 -2.3549 -1.5843 5.4088 16 6 -3.2555 -1.2884 6.5804 17 6 -3.3255 -2.1761 7.6385 18 6 -4.1455 -1.9050 8.7161 19 6 -4.9092 -0.7452 8.7311 20 8 -5.7212 -0.4790 9.7860 21 6 -6.3468 0.7154 9.7909 22 1 -6.2559 1.3759 8.9413 23 6 -7.1069 1.0954 10.8865 24 7 -7.2172 0.2908 11.9215 25 14 -7.9741 2.7498 10.8929 26 1 -8.9270 2.8136 9.7557 27 1 -8.7154 2.9152 12.1690 28 1 -6.9700 3.8356 10.7588 29 6 -4.8410 0.1416 7.6644 30 6 -4.0141 -0.1320 6.5927 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5139 0.8900 34 1 1.1492 0.5390 2.5436 35 1 3.9604 -0.9502 4.8846 36 1 4.2698 -0.6349 3.1606 37 1 3.5609 0.6369 4.1843 38 1 1.6596 -1.1009 5.7314 39 1 1.1449 0.4155 4.9545 40 1 -0.5292 -0.8362 3.6206 41 1 -0.0144 -2.3526 4.3975 42 1 -0.6390 -1.3482 6.5210 43 1 -2.7798 -1.1474 4.5050 44 1 -2.2647 -2.6633 5.2831 45 1 -2.7352 -3.0805 7.6239 46 1 -4.1964 -2.5965 9.5442 47 1 -7.7492 0.5565 12.6877 48 1 -5.4341 1.0442 7.6730 49 1 -3.9609 0.5570 5.7627 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699087300.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:46 Heat of formation + Delta-G solvation = -24.197478 kcal Electronic energy + Delta-G solvation = -28232.662325 eV Core-core repulsion = 24160.077742 eV Total energy + Delta-G solvation = -4072.584583 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.69221 -39.11584 -37.79183 -37.07738 -36.56445 -35.16859 -34.10857 -32.38585 -31.68976 -30.27966 -30.13564 -28.07813 -25.94783 -25.58914 -24.26981 -22.85036 -22.07470 -21.93582 -21.06217 -20.41930 -18.50067 -18.00742 -17.80718 -16.97493 -16.73155 -16.00545 -15.73066 -15.11978 -14.87571 -14.64943 -14.53907 -14.43505 -14.29516 -13.93843 -13.75109 -13.61496 -13.55467 -13.22935 -13.20522 -12.96940 -12.88153 -12.85998 -12.70347 -12.44172 -12.38924 -12.06547 -11.88594 -11.76734 -11.56577 -11.49011 -11.27972 -11.16431 -10.79064 -10.71282 -10.55006 -10.46311 -10.35245 -9.61565 -9.35981 -8.85732 -8.46070 -8.19852 -7.21470 -6.47307 -4.06305 1.98044 2.01784 2.19209 2.25752 2.35025 2.82198 3.11323 3.12212 3.15308 3.28776 3.93794 3.95745 4.11138 4.22730 4.37621 4.53063 4.58057 4.69119 4.75984 4.92121 5.03800 5.04661 5.07959 5.11912 5.23293 5.28501 5.32442 5.33358 5.40609 5.42847 5.48508 5.65930 5.70998 5.75604 5.79562 5.85576 5.86238 6.01995 6.18485 6.39992 6.67006 6.87036 6.87800 6.94940 7.06799 7.11227 7.17558 7.34378 7.39733 7.43306 7.61941 7.80226 7.97579 8.98203 9.68051 10.70540 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.018263 B = 0.001563 C = 0.001521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.752538 B =17913.169338 C =18409.429224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.012 4.012 3 H 0.141 0.859 4 C 0.220 3.780 5 N -0.412 5.412 6 C 0.524 3.476 7 O -0.528 6.528 8 N -0.716 5.716 9 C 0.143 3.857 10 H 0.090 0.910 11 C -0.164 4.164 12 C -0.127 4.127 13 C 0.057 3.943 14 N -0.685 5.685 15 C 0.119 3.881 16 C -0.187 4.187 17 C -0.069 4.069 18 C -0.194 4.194 19 C 0.156 3.844 20 O -0.178 6.178 21 C -0.393 4.393 22 H 0.092 0.908 23 C 0.040 3.960 24 N -0.862 5.862 25 Si 0.941 3.059 26 H -0.270 1.270 27 H -0.278 1.278 28 H -0.270 1.270 29 C -0.236 4.236 30 C -0.049 4.049 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.085 0.915 34 H 0.405 0.595 35 H 0.068 0.932 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.070 0.930 41 H 0.026 0.974 42 H 0.342 0.658 43 H 0.069 0.931 44 H 0.027 0.973 45 H 0.107 0.893 46 H 0.115 0.885 47 H 0.271 0.729 48 H 0.126 0.874 49 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.317 2.590 -17.886 24.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.036 4.036 3 H 0.159 0.841 4 C -0.099 4.099 5 N -0.086 5.086 6 C 0.307 3.693 7 O -0.403 6.403 8 N -0.368 5.368 9 C 0.039 3.961 10 H 0.108 0.892 11 C -0.222 4.222 12 C -0.165 4.165 13 C -0.073 4.073 14 N -0.317 5.317 15 C -0.009 4.009 16 C -0.188 4.188 17 C -0.088 4.088 18 C -0.213 4.213 19 C 0.102 3.898 20 O -0.081 6.081 21 C -0.469 4.469 22 H 0.109 0.891 23 C -0.165 4.165 24 N -0.497 5.497 25 Si 0.765 3.235 26 H -0.195 1.195 27 H -0.203 1.203 28 H -0.195 1.195 29 C -0.255 4.255 30 C -0.067 4.067 31 H 0.099 0.901 32 H 0.091 0.909 33 H 0.104 0.896 34 H 0.240 0.760 35 H 0.087 0.913 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.099 0.901 39 H 0.099 0.901 40 H 0.089 0.911 41 H 0.045 0.955 42 H 0.160 0.840 43 H 0.087 0.913 44 H 0.045 0.955 45 H 0.125 0.875 46 H 0.134 0.866 47 H 0.080 0.920 48 H 0.144 0.856 49 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 17.030 1.544 -19.149 25.673 hybrid contribution -0.658 0.550 0.598 1.046 sum 16.372 2.094 -18.551 24.830 Atomic orbital electron populations 1.21829 0.89322 1.04542 1.04716 1.18862 0.98968 1.00195 0.85618 0.84127 1.28086 0.93850 0.93990 0.94010 1.81213 1.07670 1.07742 1.12016 1.19985 0.80453 0.84603 0.84270 1.90798 1.37216 1.25806 1.86524 1.46021 1.53541 1.32211 1.05059 1.21030 0.93450 0.98024 0.83605 0.89232 1.22170 0.96106 1.01728 1.02212 1.21901 0.94238 1.02979 0.97361 1.21963 0.92246 0.97856 0.95198 1.60599 1.02759 1.63605 1.04712 1.20598 0.87813 0.95901 0.96582 1.19098 1.03926 0.98021 0.97755 1.20480 0.97537 0.97803 0.92935 1.20170 1.01976 0.98581 1.00587 1.19402 0.89255 0.93198 0.87973 1.83976 1.50682 1.35937 1.37505 1.21284 1.28507 0.92892 1.04192 0.89080 1.25290 0.97262 0.99543 0.94386 1.70028 1.37852 1.36050 1.05780 0.85783 0.79236 0.80331 0.78101 1.19512 1.20280 1.19472 1.21170 1.05705 1.02715 0.95929 1.20554 0.94310 0.95112 0.96755 0.90093 0.90898 0.89626 0.75955 0.91329 0.92104 0.92105 0.90124 0.90073 0.91136 0.95532 0.83993 0.91255 0.95479 0.87533 0.86644 0.91958 0.85612 0.87526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.30 9.04 37.16 0.34 0.04 16 2 C -0.01 -0.05 3.10 -94.56 -0.29 -0.34 16 3 H 0.14 0.03 8.14 -51.93 -0.42 -0.39 16 4 C 0.22 1.84 13.88 -20.76 -0.29 1.55 16 5 N -0.41 -4.82 18.54 42.15 0.78 -4.04 16 6 C 0.52 3.38 7.10 -10.98 -0.08 3.30 16 7 O -0.53 -6.03 15.69 5.56 0.09 -5.94 16 8 N -0.72 -3.02 4.42 -53.81 -0.24 -3.26 16 9 C 0.14 0.80 2.57 -67.94 -0.17 0.62 16 10 H 0.09 0.68 7.58 -51.93 -0.39 0.28 16 11 C -0.16 -0.89 9.48 37.15 0.35 -0.54 16 12 C -0.13 -0.69 5.01 -26.73 -0.13 -0.83 16 13 C 0.06 0.41 5.57 -3.82 -0.02 0.39 16 14 N -0.69 -6.95 6.49 -115.06 -0.75 -7.70 16 15 C 0.12 1.41 5.81 -4.98 -0.03 1.38 16 16 C -0.19 -2.93 5.40 -104.57 -0.56 -3.49 16 17 C -0.07 -1.15 9.69 -39.61 -0.38 -1.53 16 18 C -0.19 -3.95 9.99 -39.40 -0.39 -4.34 16 19 C 0.16 3.66 6.65 -39.11 -0.26 3.40 16 20 O -0.18 -4.99 9.76 0.04 0.00 -4.99 16 21 C -0.39 -10.76 9.49 30.89 0.29 -10.47 16 22 H 0.09 2.30 5.20 -52.49 -0.27 2.02 16 23 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 24 N -0.86 -24.90 13.67 55.48 0.76 -24.14 16 25 Si 0.94 20.07 29.55 -169.99 -5.02 15.05 16 26 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 27 H -0.28 -5.81 7.11 56.52 0.40 -5.40 16 28 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 29 C -0.24 -4.94 9.17 -39.39 -0.36 -5.30 16 30 C -0.05 -0.84 9.69 -39.61 -0.38 -1.22 16 31 H 0.08 0.10 8.14 -51.93 -0.42 -0.32 16 32 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.08 0.02 7.57 -51.93 -0.39 -0.38 16 34 H 0.40 0.66 8.02 -40.82 -0.33 0.33 16 35 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 36 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 38 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.07 0.46 7.75 -51.93 -0.40 0.06 16 41 H 0.03 0.21 8.14 -51.93 -0.42 -0.21 16 42 H 0.34 3.53 8.72 -39.29 -0.34 3.19 16 43 H 0.07 0.77 8.08 -51.92 -0.42 0.35 16 44 H 0.03 0.31 8.08 -51.93 -0.42 -0.11 16 45 H 0.11 1.48 8.06 -52.48 -0.42 1.06 16 46 H 0.12 2.29 8.06 -52.48 -0.42 1.87 16 47 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 48 H 0.13 2.64 5.64 -52.48 -0.30 2.35 16 49 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 LS Contribution 419.01 15.07 6.31 6.31 Total: -1.00 -35.06 419.01 -8.02 -43.08 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -7.48 Total: 2.03 kcal Atomic # 6 Polarization: -13.92 SS G_CDS: -2.48 Total: -16.40 kcal Atomic # 7 Polarization: -39.70 SS G_CDS: 0.56 Total: -39.14 kcal Atomic # 8 Polarization: -11.02 SS G_CDS: 0.09 Total: -10.93 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.05 kcal Total LS contribution 6.31 Total: 6.31 kcal Total: -35.06 -8.02 -43.08 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699087300.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.887 kcal (2) G-P(sol) polarization free energy of solvation -35.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds