Wall clock time and date at job start Wed Apr 1 2020 04:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.47606 * 2 1 4 4 C 1.47198 * 109.47319 * 239.99899 * 2 1 3 5 5 N 2.60802 * 109.47206 * 239.99767 * 2 1 3 6 6 C 1.50707 * 109.47152 * 119.99562 * 2 1 3 7 7 O 1.21279 * 119.99716 * 119.99372 * 6 2 1 8 8 N 1.34774 * 120.00055 * 300.00382 * 6 2 1 9 9 C 1.46498 * 120.00110 * 179.97438 * 8 6 2 10 10 H 1.09001 * 109.47102 * 324.99615 * 9 8 6 11 11 C 1.52993 * 109.47185 * 84.99531 * 9 8 6 12 12 C 1.53000 * 109.47328 * 204.99827 * 9 8 6 13 13 C 1.53001 * 109.46767 * 64.99793 * 12 9 8 14 14 N 1.46898 * 109.46885 * 180.02562 * 13 12 9 15 15 C 1.46899 * 111.00270 * 180.02562 * 14 13 12 16 16 C 1.50699 * 109.47256 * 180.02562 * 15 14 13 17 17 C 1.38304 * 119.93395 * 269.72331 * 16 15 14 18 18 C 1.38094 * 120.07122 * 179.72591 * 17 16 15 19 19 C 1.38871 * 119.93197 * 0.56935 * 18 17 16 20 20 O 1.35751 * 120.07214 * 179.67867 * 19 18 17 21 21 C 1.34832 * 117.00198 * 174.48347 * 20 19 18 22 22 H 1.07995 * 119.99604 * 5.06768 * 21 20 19 23 23 C 1.38656 * 120.00020 * 185.06000 * 21 20 19 24 24 N 1.31557 * 119.99950 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 119.99856 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47009 * 60.00181 * 25 23 21 27 27 H 1.48500 * 109.46969 * 179.97438 * 25 23 21 28 28 H 1.48498 * 109.47253 * 300.00315 * 25 23 21 29 29 C 1.38886 * 119.86184 * 359.70526 * 19 18 17 30 30 C 1.38100 * 119.92986 * 359.97438 * 29 19 18 31 31 H 1.09000 * 109.47264 * 59.99792 * 1 2 3 32 32 H 1.08999 * 109.47109 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.47389 * 300.00282 * 1 2 3 34 34 H 0.97004 * 120.00096 * 359.97438 * 8 6 2 35 35 H 1.09000 * 109.47477 * 180.02562 * 11 9 8 36 36 H 1.08998 * 109.47565 * 300.00733 * 11 9 8 37 37 H 1.09001 * 109.47032 * 60.00041 * 11 9 8 38 38 H 1.08993 * 109.47255 * 184.99898 * 12 9 8 39 39 H 1.08998 * 109.46828 * 305.00132 * 12 9 8 40 40 H 1.08997 * 109.47745 * 299.99823 * 13 12 9 41 41 H 1.08998 * 109.47169 * 60.00549 * 13 12 9 42 42 H 1.00904 * 111.00447 * 303.95497 * 14 13 12 43 43 H 1.09008 * 109.47086 * 299.99668 * 15 14 13 44 44 H 1.08996 * 109.47226 * 60.00148 * 15 14 13 45 45 H 1.08008 * 119.96063 * 359.97438 * 17 16 15 46 46 H 1.08008 * 120.03437 * 180.27250 * 18 17 16 47 47 H 0.96997 * 119.99830 * 180.02562 * 24 23 21 48 48 H 1.08003 * 120.03335 * 179.97438 * 29 19 18 49 49 H 1.07998 * 119.96633 * 179.97438 * 30 29 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0207 -0.6939 -1.2018 5 7 2.3993 -1.2295 -2.1294 6 6 2.0323 -0.7103 1.2306 7 8 2.7295 -1.6965 1.1193 8 7 1.7067 -0.2499 2.4546 9 6 2.1945 -0.9407 3.6508 10 1 2.2308 -2.0135 3.4615 11 6 3.5972 -0.4359 3.9949 12 6 1.2504 -0.6612 4.8219 13 6 -0.1199 -1.2759 4.5300 14 7 -1.0266 -1.0071 5.6541 15 6 -2.3549 -1.5843 5.4088 16 6 -3.2555 -1.2884 6.5804 17 6 -3.3255 -2.1761 7.6385 18 6 -4.1455 -1.9050 8.7161 19 6 -4.9092 -0.7452 8.7311 20 8 -5.7212 -0.4790 9.7860 21 6 -6.3468 0.7154 9.7909 22 1 -6.2559 1.3759 8.9413 23 6 -7.1069 1.0954 10.8865 24 7 -7.2172 0.2908 11.9215 25 14 -7.9741 2.7498 10.8929 26 1 -8.9270 2.8136 9.7557 27 1 -8.7154 2.9152 12.1690 28 1 -6.9700 3.8356 10.7588 29 6 -4.8410 0.1416 7.6644 30 6 -4.0141 -0.1320 6.5927 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5139 0.8900 34 1 1.1492 0.5390 2.5436 35 1 3.9604 -0.9502 4.8846 36 1 4.2698 -0.6349 3.1606 37 1 3.5609 0.6369 4.1843 38 1 1.6596 -1.1009 5.7314 39 1 1.1449 0.4155 4.9545 40 1 -0.5292 -0.8362 3.6206 41 1 -0.0144 -2.3526 4.3975 42 1 -0.6390 -1.3482 6.5210 43 1 -2.7798 -1.1474 4.5050 44 1 -2.2647 -2.6633 5.2831 45 1 -2.7352 -3.0805 7.6239 46 1 -4.1964 -2.5965 9.5442 47 1 -7.7492 0.5565 12.6877 48 1 -5.4341 1.0442 7.6730 49 1 -3.9609 0.5570 5.7627 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699087300.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:45 Heat of formation + Delta-G solvation = -49.205365 kcal Electronic energy + Delta-G solvation = -28233.746748 eV Core-core repulsion = 24160.077742 eV Total energy + Delta-G solvation = -4073.669006 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.20387 -40.73776 -38.76699 -38.08546 -37.41508 -36.04736 -34.59113 -34.24516 -32.41611 -31.73108 -31.13106 -29.00282 -27.40614 -26.21851 -25.36783 -23.59739 -23.48719 -22.56124 -21.90763 -21.49840 -19.79317 -19.01580 -18.76438 -18.23041 -17.25531 -16.88472 -16.42849 -16.20504 -16.11484 -15.84531 -15.68764 -15.45052 -15.16755 -15.04020 -14.86858 -14.68157 -14.37014 -14.22172 -14.10900 -14.01647 -13.76464 -13.60041 -13.46336 -13.21671 -13.08760 -12.92574 -12.81519 -12.74960 -12.48749 -12.39222 -12.36006 -12.14215 -12.10597 -11.99811 -11.80360 -11.62338 -11.12336 -10.88667 -10.75173 -10.09531 -9.71802 -9.26338 -8.84585 -8.43740 -6.11880 0.66071 0.73919 1.37644 1.45456 1.48316 1.51822 1.53905 1.73683 2.20889 2.34542 2.82971 2.83264 3.14265 3.45705 3.57186 3.73583 3.97448 4.04325 4.10438 4.13502 4.17398 4.21709 4.24060 4.28214 4.52678 4.59584 4.66150 4.67954 4.79181 4.81170 4.85653 4.87906 4.90021 4.92637 5.00795 5.15432 5.17575 5.20410 5.31079 5.32337 5.36677 5.40399 5.57779 5.62654 5.77326 5.87877 6.06763 6.18548 6.31583 6.42445 6.55186 6.59959 7.01098 7.22511 7.82853 8.79294 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.018263 B = 0.001563 C = 0.001521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.752538 B =17913.169338 C =18409.429224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.004 4.004 3 H 0.188 0.812 4 C 0.241 3.759 5 N -0.481 5.481 6 C 0.524 3.476 7 O -0.585 6.585 8 N -0.698 5.698 9 C 0.148 3.852 10 H 0.067 0.933 11 C -0.160 4.160 12 C -0.115 4.115 13 C 0.059 3.941 14 N -0.690 5.690 15 C 0.122 3.878 16 C -0.157 4.157 17 C -0.062 4.062 18 C -0.208 4.208 19 C 0.112 3.888 20 O -0.236 6.236 21 C -0.413 4.413 22 H 0.103 0.897 23 C -0.024 4.024 24 N -0.922 5.922 25 Si 1.018 2.982 26 H -0.257 1.257 27 H -0.274 1.274 28 H -0.256 1.256 29 C -0.245 4.245 30 C -0.047 4.047 31 H 0.092 0.908 32 H 0.055 0.945 33 H 0.114 0.886 34 H 0.422 0.578 35 H 0.070 0.930 36 H 0.041 0.959 37 H 0.074 0.926 38 H 0.080 0.920 39 H 0.091 0.909 40 H 0.084 0.916 41 H 0.021 0.979 42 H 0.341 0.659 43 H 0.087 0.913 44 H 0.039 0.961 45 H 0.143 0.857 46 H 0.108 0.892 47 H 0.272 0.728 48 H 0.117 0.883 49 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.225 4.659 -20.092 26.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.028 4.028 3 H 0.204 0.796 4 C -0.077 4.077 5 N -0.157 5.157 6 C 0.309 3.691 7 O -0.465 6.465 8 N -0.351 5.351 9 C 0.043 3.957 10 H 0.086 0.914 11 C -0.218 4.218 12 C -0.153 4.153 13 C -0.070 4.070 14 N -0.321 5.321 15 C -0.006 4.006 16 C -0.158 4.158 17 C -0.081 4.081 18 C -0.227 4.227 19 C 0.061 3.939 20 O -0.143 6.143 21 C -0.489 4.489 22 H 0.120 0.880 23 C -0.221 4.221 24 N -0.560 5.560 25 Si 0.837 3.163 26 H -0.181 1.181 27 H -0.198 1.198 28 H -0.181 1.181 29 C -0.264 4.264 30 C -0.065 4.065 31 H 0.111 0.889 32 H 0.074 0.926 33 H 0.132 0.868 34 H 0.261 0.739 35 H 0.089 0.911 36 H 0.060 0.940 37 H 0.093 0.907 38 H 0.099 0.901 39 H 0.109 0.891 40 H 0.103 0.897 41 H 0.040 0.960 42 H 0.159 0.841 43 H 0.105 0.895 44 H 0.058 0.942 45 H 0.161 0.839 46 H 0.126 0.874 47 H 0.081 0.919 48 H 0.135 0.865 49 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 17.957 3.632 -21.398 28.169 hybrid contribution -0.672 -0.254 1.057 1.278 sum 17.286 3.377 -20.340 26.906 Atomic orbital electron populations 1.21905 0.87384 1.04099 1.06763 1.19203 1.00187 1.01284 0.82153 0.79555 1.28999 0.92087 0.92583 0.94039 1.81219 1.10033 1.09967 1.14525 1.20392 0.79517 0.83845 0.85373 1.90792 1.39921 1.28434 1.87305 1.45873 1.52912 1.32293 1.04049 1.20884 0.93753 0.96997 0.84047 0.91439 1.22127 0.95524 1.02644 1.01549 1.21786 0.93079 1.03389 0.97067 1.22017 0.92455 0.97891 0.94616 1.60553 1.02460 1.63436 1.05647 1.20598 0.87995 0.97067 0.94939 1.19652 1.02101 0.96053 0.97953 1.20889 0.96302 0.99196 0.91670 1.20427 1.02540 0.97766 1.01956 1.19972 0.90448 0.95189 0.88259 1.83939 1.53389 1.36818 1.40111 1.21788 1.28825 0.93357 1.04935 0.88015 1.26589 0.97977 1.03870 0.93675 1.70183 1.40121 1.38758 1.06961 0.84656 0.78169 0.74970 0.78489 1.18131 1.19827 1.18055 1.21286 1.06517 1.02084 0.96501 1.20930 0.93044 0.96233 0.96330 0.88884 0.92603 0.86750 0.73883 0.91055 0.94022 0.90696 0.90097 0.89066 0.89737 0.96031 0.84102 0.89482 0.94237 0.83913 0.87352 0.91946 0.86496 0.84089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.02 9.04 71.98 0.65 0.63 16 2 C 0.00 -0.02 3.10 -13.35 -0.04 -0.06 16 3 H 0.19 -0.84 8.14 -2.39 -0.02 -0.86 16 4 C 0.24 3.79 13.88 89.44 1.24 5.03 16 5 N -0.48 -11.44 18.54 20.01 0.37 -11.07 16 6 C 0.52 5.55 7.10 87.66 0.62 6.17 16 7 O -0.58 -13.09 15.69 -3.03 -0.05 -13.14 16 8 N -0.70 -3.45 4.42 -442.54 -1.96 -5.41 16 9 C 0.15 1.26 2.57 44.99 0.12 1.38 16 10 H 0.07 0.93 7.58 -2.39 -0.02 0.91 16 11 C -0.16 -1.41 9.48 71.98 0.68 -0.73 16 12 C -0.12 -0.82 5.01 30.59 0.15 -0.66 16 13 C 0.06 0.59 5.57 86.30 0.48 1.07 16 14 N -0.69 -10.61 6.49 -517.94 -3.36 -13.97 16 15 C 0.12 2.24 5.81 85.56 0.50 2.74 16 16 C -0.16 -4.29 5.40 -19.83 -0.11 -4.40 16 17 C -0.06 -1.91 9.69 22.25 0.22 -1.70 16 18 C -0.21 -8.54 9.99 22.39 0.22 -8.32 16 19 C 0.11 5.43 6.65 22.58 0.15 5.58 16 20 O -0.24 -14.08 9.76 -22.77 -0.22 -14.30 16 21 C -0.41 -23.75 9.49 67.92 0.64 -23.10 16 22 H 0.10 5.32 5.20 -2.91 -0.02 5.31 16 23 C -0.02 -1.34 5.49 84.83 0.47 -0.87 16 24 N -0.92 -56.22 13.67 21.61 0.30 -55.93 16 25 Si 1.02 42.03 29.55 68.60 2.03 44.05 16 26 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 27 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 28 H -0.26 -9.87 7.11 99.48 0.71 -9.17 16 29 C -0.24 -10.19 9.17 22.39 0.21 -9.98 16 30 C -0.05 -1.48 9.69 22.25 0.22 -1.26 16 31 H 0.09 -0.14 8.14 -2.39 -0.02 -0.16 16 32 H 0.05 0.24 8.14 -2.39 -0.02 0.22 16 33 H 0.11 -0.61 7.57 -2.39 -0.02 -0.63 16 34 H 0.42 -0.79 8.02 -92.70 -0.74 -1.53 16 35 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 36 H 0.04 0.54 8.14 -2.39 -0.02 0.53 16 37 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 38 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 39 H 0.09 0.53 8.14 -2.39 -0.02 0.52 16 40 H 0.08 0.64 7.75 -2.39 -0.02 0.62 16 41 H 0.02 0.26 8.14 -2.39 -0.02 0.24 16 42 H 0.34 5.54 8.72 -89.69 -0.78 4.76 16 43 H 0.09 1.39 8.08 -2.38 -0.02 1.37 16 44 H 0.04 0.68 8.08 -2.39 -0.02 0.66 16 45 H 0.14 3.38 8.06 -2.91 -0.02 3.35 16 46 H 0.11 4.48 8.06 -2.91 -0.02 4.46 16 47 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 48 H 0.12 4.98 5.64 -2.91 -0.02 4.96 16 49 H 0.14 3.49 8.06 -2.91 -0.02 3.47 16 Total: -1.00 -85.59 419.01 2.98 -82.62 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: -0.55 Total: 15.64 kcal Atomic # 6 Polarization: -34.91 SS G_CDS: 6.42 Total: -28.49 kcal Atomic # 7 Polarization: -81.72 SS G_CDS: -4.65 Total: -86.37 kcal Atomic # 8 Polarization: -27.17 SS G_CDS: -0.27 Total: -27.44 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.05 kcal Total: -85.59 2.98 -82.62 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699087300.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.410 kcal (2) G-P(sol) polarization free energy of solvation -85.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds