Wall clock time and date at job start Wed Apr 1 2020 02:55:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 110.29047 * 2 1 4 4 C 1.54005 * 110.32281 * 122.13485 * 2 1 3 5 5 N 1.47490 * 107.08237 * 120.19885 * 4 2 1 6 6 C 1.34777 * 127.03149 * 154.51761 * 5 4 2 7 7 O 1.21278 * 119.99854 * 180.02562 * 6 5 4 8 8 C 1.50703 * 120.00161 * 0.02562 * 6 5 4 9 9 N 1.46505 * 109.47064 * 180.02562 * 8 6 5 10 10 C 1.34771 * 119.99622 * 179.97438 * 9 8 6 11 11 O 1.21548 * 120.00715 * 0.02562 * 10 9 8 12 12 C 1.47851 * 119.99564 * 180.02562 * 10 9 8 13 13 C 1.39574 * 120.14597 * 359.72565 * 12 10 9 14 14 C 1.37955 * 119.85528 * 179.79279 * 13 12 10 15 15 C 1.38368 * 120.14012 * 0.48530 * 14 13 12 16 16 C 1.38353 * 120.29558 * 359.74783 * 15 14 13 17 17 C 1.37963 * 120.14252 * 0.02562 * 16 15 14 18 18 C 1.48114 * 105.93301 * 334.77436 * 5 4 2 19 19 C 1.54599 * 103.41982 * 39.02681 * 18 5 4 20 20 H 1.08995 * 110.73056 * 81.24344 * 19 18 5 21 21 C 1.53003 * 110.83180 * 204.44696 * 19 18 5 22 22 N 1.46503 * 109.46977 * 288.56124 * 21 19 18 23 23 C 1.36939 * 119.99908 * 179.97438 * 22 21 19 24 24 H 1.07995 * 119.99931 * 0.02562 * 23 22 21 25 25 C 1.38814 * 119.99976 * 179.97438 * 23 22 21 26 26 N 1.31621 * 119.99921 * 0.02562 * 25 23 22 27 27 Si 1.86799 * 120.00173 * 180.02562 * 25 23 22 28 28 H 1.48504 * 109.46843 * 359.97438 * 27 25 23 29 29 H 1.48496 * 109.47079 * 120.00010 * 27 25 23 30 30 H 1.48499 * 109.47054 * 240.00167 * 27 25 23 31 31 H 1.09001 * 109.46952 * 299.31970 * 1 2 3 32 32 H 1.09000 * 109.47094 * 59.31973 * 1 2 3 33 33 H 1.09005 * 109.47367 * 179.32340 * 1 2 3 34 34 H 1.09001 * 109.91884 * 0.83542 * 4 2 1 35 35 H 1.08998 * 109.91042 * 239.55499 * 4 2 1 36 36 H 1.09002 * 109.47152 * 60.00245 * 8 6 5 37 37 H 1.09001 * 109.46980 * 300.00345 * 8 6 5 38 38 H 0.96996 * 119.99606 * 0.02562 * 9 8 6 39 39 H 1.08000 * 120.07159 * 0.02562 * 13 12 10 40 40 H 1.08000 * 119.93065 * 180.23180 * 14 13 12 41 41 H 1.07998 * 119.84725 * 179.76789 * 15 14 13 42 42 H 1.07994 * 119.92817 * 180.02562 * 16 15 14 43 43 H 1.07998 * 120.07195 * 180.02562 * 17 16 15 44 44 H 1.08999 * 110.66097 * 157.51073 * 18 5 4 45 45 H 1.08994 * 110.66019 * 280.62855 * 18 5 4 46 46 H 1.09003 * 109.47460 * 48.55928 * 21 19 18 47 47 H 1.08999 * 109.47142 * 168.56396 * 21 19 18 48 48 H 0.97003 * 119.99866 * 0.02562 * 22 21 19 49 49 H 0.97003 * 119.99850 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9080 1.0223 0.0000 4 6 2.0649 -0.7682 1.2229 5 7 2.8803 -1.8851 0.7103 6 6 3.8922 -2.5095 1.3449 7 8 4.4803 -3.4194 0.7998 8 6 4.2928 -2.0771 2.7319 9 7 5.4084 -2.9044 3.1982 10 6 5.9367 -2.6963 4.4204 11 8 5.4874 -1.8226 5.1361 12 6 7.0630 -3.5307 4.8907 13 6 7.5776 -4.5385 4.0737 14 6 8.6314 -5.3108 4.5168 15 6 9.1714 -5.0946 5.7723 16 6 8.6628 -4.1004 6.5891 17 6 7.6122 -3.3180 6.1561 18 6 2.3640 -2.1760 -0.6471 19 6 2.0671 -0.7736 -1.2262 20 1 2.9788 -0.3117 -1.6050 21 6 1.0051 -0.8522 -2.3249 22 7 1.5799 -1.4837 -3.5153 23 6 0.8108 -1.6633 -4.6340 24 1 -0.2193 -1.3390 -4.6389 25 6 1.3556 -2.2611 -5.7622 26 7 2.6112 -2.6559 -5.7564 27 14 0.3068 -2.5054 -7.2885 28 1 -1.0597 -1.9801 -7.0393 29 1 0.9169 -1.7776 -8.4300 30 1 0.2291 -3.9533 -7.6092 31 1 -0.3633 0.5032 0.8960 32 1 -0.3633 0.5244 -0.8838 33 1 -0.3634 -1.0276 -0.0121 34 1 1.2329 -1.1554 1.8112 35 1 2.6807 -0.1092 1.8349 36 1 3.4458 -2.1943 3.4079 37 1 4.5998 -1.0314 2.7120 38 1 5.7672 -3.6013 2.6268 39 1 7.1543 -4.7109 3.0952 40 1 9.0330 -6.0885 3.8841 41 1 9.9939 -5.7044 6.1159 42 1 9.0891 -3.9365 7.5677 43 1 7.2164 -2.5421 6.7945 44 1 3.1194 -2.6861 -1.2448 45 1 1.4507 -2.7684 -0.5924 46 1 0.1603 -1.4437 -1.9720 47 1 0.6658 0.1530 -2.5748 48 1 2.5051 -1.7753 -3.5108 49 1 2.9918 -3.0740 -6.5446 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699967730.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:16 Heat of formation + Delta-G solvation = -28.453896 kcal Electronic energy + Delta-G solvation = -29109.939765 eV Core-core repulsion = 25037.170610 eV Total energy + Delta-G solvation = -4072.769155 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.73903 -40.08040 -38.68026 -38.04500 -34.81447 -34.73795 -33.02143 -31.80268 -31.32540 -31.21247 -29.51776 -28.03044 -26.46063 -25.23826 -23.97096 -23.20481 -22.76932 -21.95364 -20.78583 -19.75307 -19.11699 -18.52245 -17.23565 -16.91914 -16.50690 -16.41041 -16.19149 -15.65057 -15.50501 -14.94459 -14.79989 -14.74564 -14.65656 -14.01976 -13.90007 -13.85571 -13.59614 -13.25718 -13.18899 -12.91428 -12.64363 -12.47118 -12.32298 -12.16613 -12.08111 -11.86404 -11.71766 -11.49892 -11.02136 -10.87773 -10.56427 -10.46405 -10.33697 -10.28475 -10.06410 -9.96189 -9.70321 -9.58527 -9.40646 -9.30341 -8.90005 -8.76271 -6.93891 -5.77405 -3.06763 0.45866 0.95866 2.40489 2.47382 2.53803 3.09649 3.42649 3.47947 3.50154 3.50503 4.16409 4.32357 4.43493 4.53049 4.53558 4.56818 4.72491 4.76434 4.82947 4.96013 5.03535 5.03999 5.08676 5.23853 5.38050 5.39838 5.41261 5.51572 5.57029 5.57771 5.73010 5.78496 5.88000 5.89857 5.95047 5.97903 6.02833 6.03171 6.09466 6.11968 6.24812 6.34636 6.43298 6.46054 6.68263 6.80700 7.15245 7.41773 7.69004 7.83677 7.94113 8.40855 9.52126 10.09324 10.43249 11.45287 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.016234 B = 0.001898 C = 0.001716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.330725 B =14752.640612 C =16316.882350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.098 4.098 3 H 0.084 0.916 4 C 0.100 3.900 5 N -0.615 5.615 6 C 0.525 3.475 7 O -0.538 6.538 8 C 0.105 3.895 9 N -0.713 5.713 10 C 0.562 3.438 11 O -0.539 6.539 12 C -0.135 4.135 13 C -0.084 4.084 14 C -0.127 4.127 15 C -0.094 4.094 16 C -0.130 4.130 17 C -0.059 4.059 18 C 0.116 3.884 19 C -0.104 4.104 20 H 0.083 0.917 21 C 0.165 3.835 22 N -0.734 5.734 23 C -0.240 4.240 24 H 0.071 0.929 25 C -0.014 4.014 26 N -0.931 5.931 27 Si 0.907 3.093 28 H -0.280 1.280 29 H -0.292 1.292 30 H -0.292 1.292 31 H 0.052 0.948 32 H 0.068 0.932 33 H 0.060 0.940 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.100 0.900 37 H 0.100 0.900 38 H 0.413 0.587 39 H 0.130 0.870 40 H 0.131 0.869 41 H 0.127 0.873 42 H 0.130 0.870 43 H 0.136 0.864 44 H 0.090 0.910 45 H 0.077 0.923 46 H 0.026 0.974 47 H 0.025 0.975 48 H 0.383 0.617 49 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.103 0.092 25.839 27.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.118 4.118 3 H 0.102 0.898 4 C -0.023 4.023 5 N -0.349 5.349 6 C 0.312 3.688 7 O -0.415 6.415 8 C -0.022 4.022 9 N -0.369 5.369 10 C 0.350 3.650 11 O -0.417 6.417 12 C -0.138 4.138 13 C -0.102 4.102 14 C -0.145 4.145 15 C -0.112 4.112 16 C -0.148 4.148 17 C -0.078 4.078 18 C -0.005 4.005 19 C -0.123 4.123 20 H 0.101 0.899 21 C 0.037 3.963 22 N -0.378 5.378 23 C -0.371 4.371 24 H 0.089 0.911 25 C -0.210 4.210 26 N -0.580 5.580 27 Si 0.738 3.262 28 H -0.206 1.206 29 H -0.219 1.219 30 H -0.219 1.219 31 H 0.071 0.929 32 H 0.087 0.913 33 H 0.079 0.921 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.118 0.882 37 H 0.118 0.882 38 H 0.252 0.748 39 H 0.148 0.852 40 H 0.148 0.852 41 H 0.145 0.855 42 H 0.148 0.852 43 H 0.154 0.846 44 H 0.108 0.892 45 H 0.095 0.905 46 H 0.043 0.957 47 H 0.042 0.958 48 H 0.217 0.783 49 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 7.998 0.182 25.970 27.174 hybrid contribution -0.092 -0.539 -1.256 1.370 sum 7.906 -0.357 24.714 25.950 Atomic orbital electron populations 1.21910 0.93868 1.02503 1.02022 1.22038 0.96782 0.99374 0.93600 0.89771 1.22354 0.94761 0.88128 0.97067 1.48775 1.32717 1.34832 1.18561 1.19995 0.79176 0.82383 0.87199 1.90726 1.53331 1.29955 1.67489 1.21050 0.91326 0.96625 0.93178 1.45640 1.35129 1.38427 1.17689 1.18254 0.82550 0.83370 0.80854 1.90773 1.62142 1.33468 1.55354 1.19878 0.98486 0.98851 0.96571 1.21439 0.95733 0.93882 0.99188 1.21167 0.96672 1.00070 0.96565 1.21422 0.98942 0.96919 0.93962 1.21179 0.97027 0.96224 1.00382 1.21294 0.94301 0.98021 0.94222 1.22549 0.99720 0.97494 0.80755 1.22468 1.00487 0.94504 0.94885 0.89881 1.20718 0.93260 0.96192 0.86142 1.42417 1.13045 1.72065 1.10317 1.19245 0.94434 1.32667 0.90804 0.91107 1.24759 0.96295 1.01595 0.98343 1.69674 1.12471 1.46450 1.29394 0.86125 0.79301 0.77419 0.83378 1.20553 1.21887 1.21881 0.92910 0.91278 0.92106 0.90884 0.90759 0.88214 0.88192 0.74809 0.85230 0.85154 0.85489 0.85239 0.84576 0.89172 0.90494 0.95671 0.95776 0.78295 0.93524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 7.78 37.16 0.29 -1.19 16 2 C -0.10 -1.07 3.53 -89.25 -0.32 -1.38 16 3 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 4 C 0.10 0.97 6.42 -2.98 -0.02 0.95 16 5 N -0.62 -7.91 3.29 -169.98 -0.56 -8.47 16 6 C 0.52 7.04 7.96 -10.98 -0.09 6.96 16 7 O -0.54 -9.05 15.88 5.56 0.09 -8.96 16 8 C 0.11 1.12 5.23 -5.19 -0.03 1.09 16 9 N -0.71 -7.83 5.48 -62.42 -0.34 -8.18 16 10 C 0.56 6.59 7.77 -12.33 -0.10 6.49 16 11 O -0.54 -7.67 16.35 5.32 0.09 -7.59 16 12 C -0.13 -1.33 5.87 -104.97 -0.62 -1.95 16 13 C -0.08 -0.70 9.54 -39.19 -0.37 -1.07 16 14 C -0.13 -0.88 10.03 -39.64 -0.40 -1.28 16 15 C -0.09 -0.59 10.04 -39.49 -0.40 -0.99 16 16 C -0.13 -0.88 10.03 -39.64 -0.40 -1.28 16 17 C -0.06 -0.52 9.60 -39.18 -0.38 -0.90 16 18 C 0.12 1.80 6.44 -2.31 -0.01 1.78 16 19 C -0.10 -1.55 2.99 -88.93 -0.27 -1.82 16 20 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 21 C 0.16 3.06 4.44 -4.04 -0.02 3.04 16 22 N -0.73 -18.05 5.52 -59.90 -0.33 -18.38 16 23 C -0.24 -6.62 9.99 -15.06 -0.15 -6.77 16 24 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 25 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 26 N -0.93 -28.21 13.06 55.49 0.72 -27.48 16 27 Si 0.91 22.32 29.55 -169.99 -5.02 17.30 16 28 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 29 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 30 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.77 6.76 -51.93 -0.35 0.42 16 33 H 0.06 0.66 7.51 -51.93 -0.39 0.27 16 34 H 0.07 0.62 7.68 -51.93 -0.40 0.22 16 35 H 0.07 0.58 7.54 -51.93 -0.39 0.19 16 36 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.10 0.97 7.91 -51.93 -0.41 0.56 16 38 H 0.41 4.39 5.47 -40.82 -0.22 4.16 16 39 H 0.13 0.96 6.41 -52.49 -0.34 0.62 16 40 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 41 H 0.13 0.49 8.06 -52.49 -0.42 0.07 16 42 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 43 H 0.14 1.18 7.65 -52.49 -0.40 0.77 16 44 H 0.09 1.66 7.85 -51.93 -0.41 1.25 16 45 H 0.08 1.20 7.93 -51.93 -0.41 0.79 16 46 H 0.03 0.47 6.80 -51.93 -0.35 0.11 16 47 H 0.02 0.45 7.37 -51.93 -0.38 0.07 16 48 H 0.38 10.06 7.67 -40.82 -0.31 9.75 16 49 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 401.05 15.07 6.04 6.04 Total: -1.00 -34.38 401.05 -9.95 -44.33 By element: Atomic # 1 Polarization: 17.47 SS G_CDS: -7.28 Total: 10.19 kcal Atomic # 6 Polarization: 4.55 SS G_CDS: -3.36 Total: 1.19 kcal Atomic # 7 Polarization: -62.00 SS G_CDS: -0.51 Total: -62.51 kcal Atomic # 8 Polarization: -16.72 SS G_CDS: 0.18 Total: -16.54 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -34.38 -9.95 -44.33 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699967730.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.873 kcal (2) G-P(sol) polarization free energy of solvation -34.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds