Wall clock time and date at job start Wed Apr 1 2020 02:55:16
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 H 1.08998 * 110.29047 * 2 1
4 4 C 1.54005 * 110.32281 * 122.13485 * 2 1 3
5 5 N 1.47490 * 107.08237 * 120.19885 * 4 2 1
6 6 C 1.34777 * 127.03149 * 154.51761 * 5 4 2
7 7 O 1.21278 * 119.99854 * 180.02562 * 6 5 4
8 8 C 1.50703 * 120.00161 * 0.02562 * 6 5 4
9 9 N 1.46505 * 109.47064 * 180.02562 * 8 6 5
10 10 C 1.34771 * 119.99622 * 179.97438 * 9 8 6
11 11 O 1.21548 * 120.00715 * 0.02562 * 10 9 8
12 12 C 1.47851 * 119.99564 * 180.02562 * 10 9 8
13 13 C 1.39574 * 120.14597 * 359.72565 * 12 10 9
14 14 C 1.37955 * 119.85528 * 179.79279 * 13 12 10
15 15 C 1.38368 * 120.14012 * 0.48530 * 14 13 12
16 16 C 1.38353 * 120.29558 * 359.74783 * 15 14 13
17 17 C 1.37963 * 120.14252 * 0.02562 * 16 15 14
18 18 C 1.48114 * 105.93301 * 334.77436 * 5 4 2
19 19 C 1.54599 * 103.41982 * 39.02681 * 18 5 4
20 20 H 1.08995 * 110.73056 * 81.24344 * 19 18 5
21 21 C 1.53003 * 110.83180 * 204.44696 * 19 18 5
22 22 N 1.46503 * 109.46977 * 288.56124 * 21 19 18
23 23 C 1.36939 * 119.99908 * 179.97438 * 22 21 19
24 24 H 1.07995 * 119.99931 * 0.02562 * 23 22 21
25 25 C 1.38814 * 119.99976 * 179.97438 * 23 22 21
26 26 N 1.31621 * 119.99921 * 0.02562 * 25 23 22
27 27 Si 1.86799 * 120.00173 * 180.02562 * 25 23 22
28 28 H 1.48504 * 109.46843 * 359.97438 * 27 25 23
29 29 H 1.48496 * 109.47079 * 120.00010 * 27 25 23
30 30 H 1.48499 * 109.47054 * 240.00167 * 27 25 23
31 31 H 1.09001 * 109.46952 * 299.31970 * 1 2 3
32 32 H 1.09000 * 109.47094 * 59.31973 * 1 2 3
33 33 H 1.09005 * 109.47367 * 179.32340 * 1 2 3
34 34 H 1.09001 * 109.91884 * 0.83542 * 4 2 1
35 35 H 1.08998 * 109.91042 * 239.55499 * 4 2 1
36 36 H 1.09002 * 109.47152 * 60.00245 * 8 6 5
37 37 H 1.09001 * 109.46980 * 300.00345 * 8 6 5
38 38 H 0.96996 * 119.99606 * 0.02562 * 9 8 6
39 39 H 1.08000 * 120.07159 * 0.02562 * 13 12 10
40 40 H 1.08000 * 119.93065 * 180.23180 * 14 13 12
41 41 H 1.07998 * 119.84725 * 179.76789 * 15 14 13
42 42 H 1.07994 * 119.92817 * 180.02562 * 16 15 14
43 43 H 1.07998 * 120.07195 * 180.02562 * 17 16 15
44 44 H 1.08999 * 110.66097 * 157.51073 * 18 5 4
45 45 H 1.08994 * 110.66019 * 280.62855 * 18 5 4
46 46 H 1.09003 * 109.47460 * 48.55928 * 21 19 18
47 47 H 1.08999 * 109.47142 * 168.56396 * 21 19 18
48 48 H 0.97003 * 119.99866 * 0.02562 * 22 21 19
49 49 H 0.97003 * 119.99850 * 179.97438 * 26 25 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9080 1.0223 0.0000
4 6 2.0649 -0.7682 1.2229
5 7 2.8803 -1.8851 0.7103
6 6 3.8922 -2.5095 1.3449
7 8 4.4803 -3.4194 0.7998
8 6 4.2928 -2.0771 2.7319
9 7 5.4084 -2.9044 3.1982
10 6 5.9367 -2.6963 4.4204
11 8 5.4874 -1.8226 5.1361
12 6 7.0630 -3.5307 4.8907
13 6 7.5776 -4.5385 4.0737
14 6 8.6314 -5.3108 4.5168
15 6 9.1714 -5.0946 5.7723
16 6 8.6628 -4.1004 6.5891
17 6 7.6122 -3.3180 6.1561
18 6 2.3640 -2.1760 -0.6471
19 6 2.0671 -0.7736 -1.2262
20 1 2.9788 -0.3117 -1.6050
21 6 1.0051 -0.8522 -2.3249
22 7 1.5799 -1.4837 -3.5153
23 6 0.8108 -1.6633 -4.6340
24 1 -0.2193 -1.3390 -4.6389
25 6 1.3556 -2.2611 -5.7622
26 7 2.6112 -2.6559 -5.7564
27 14 0.3068 -2.5054 -7.2885
28 1 -1.0597 -1.9801 -7.0393
29 1 0.9169 -1.7776 -8.4300
30 1 0.2291 -3.9533 -7.6092
31 1 -0.3633 0.5032 0.8960
32 1 -0.3633 0.5244 -0.8838
33 1 -0.3634 -1.0276 -0.0121
34 1 1.2329 -1.1554 1.8112
35 1 2.6807 -0.1092 1.8349
36 1 3.4458 -2.1943 3.4079
37 1 4.5998 -1.0314 2.7120
38 1 5.7672 -3.6013 2.6268
39 1 7.1543 -4.7109 3.0952
40 1 9.0330 -6.0885 3.8841
41 1 9.9939 -5.7044 6.1159
42 1 9.0891 -3.9365 7.5677
43 1 7.2164 -2.5421 6.7945
44 1 3.1194 -2.6861 -1.2448
45 1 1.4507 -2.7684 -0.5924
46 1 0.1603 -1.4437 -1.9720
47 1 0.6658 0.1530 -2.5748
48 1 2.5051 -1.7753 -3.5108
49 1 2.9918 -3.0740 -6.5446
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001699967730.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 02:55:16
Heat of formation + Delta-G solvation = -28.453896 kcal
Electronic energy + Delta-G solvation = -29109.939765 eV
Core-core repulsion = 25037.170610 eV
Total energy + Delta-G solvation = -4072.769155 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 345.184 amu
Computer time = 0.97 seconds
Orbital eigenvalues (eV)
-40.73903 -40.08040 -38.68026 -38.04500 -34.81447 -34.73795 -33.02143 -31.80268
-31.32540 -31.21247 -29.51776 -28.03044 -26.46063 -25.23826 -23.97096 -23.20481
-22.76932 -21.95364 -20.78583 -19.75307 -19.11699 -18.52245 -17.23565 -16.91914
-16.50690 -16.41041 -16.19149 -15.65057 -15.50501 -14.94459 -14.79989 -14.74564
-14.65656 -14.01976 -13.90007 -13.85571 -13.59614 -13.25718 -13.18899 -12.91428
-12.64363 -12.47118 -12.32298 -12.16613 -12.08111 -11.86404 -11.71766 -11.49892
-11.02136 -10.87773 -10.56427 -10.46405 -10.33697 -10.28475 -10.06410 -9.96189
-9.70321 -9.58527 -9.40646 -9.30341 -8.90005 -8.76271 -6.93891 -5.77405
-3.06763 0.45866 0.95866 2.40489 2.47382 2.53803 3.09649 3.42649
3.47947 3.50154 3.50503 4.16409 4.32357 4.43493 4.53049 4.53558
4.56818 4.72491 4.76434 4.82947 4.96013 5.03535 5.03999 5.08676
5.23853 5.38050 5.39838 5.41261 5.51572 5.57029 5.57771 5.73010
5.78496 5.88000 5.89857 5.95047 5.97903 6.02833 6.03171 6.09466
6.11968 6.24812 6.34636 6.43298 6.46054 6.68263 6.80700 7.15245
7.41773 7.69004 7.83677 7.94113 8.40855 9.52126 10.09324 10.43249
11.45287
Molecular weight = 345.18amu
Principal moments of inertia in cm(-1)
A = 0.016234 B = 0.001898 C = 0.001716
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1724.330725 B =14752.640612 C =16316.882350
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.146 4.146
2 C -0.098 4.098
3 H 0.084 0.916
4 C 0.100 3.900
5 N -0.615 5.615
6 C 0.525 3.475
7 O -0.538 6.538
8 C 0.105 3.895
9 N -0.713 5.713
10 C 0.562 3.438
11 O -0.539 6.539
12 C -0.135 4.135
13 C -0.084 4.084
14 C -0.127 4.127
15 C -0.094 4.094
16 C -0.130 4.130
17 C -0.059 4.059
18 C 0.116 3.884
19 C -0.104 4.104
20 H 0.083 0.917
21 C 0.165 3.835
22 N -0.734 5.734
23 C -0.240 4.240
24 H 0.071 0.929
25 C -0.014 4.014
26 N -0.931 5.931
27 Si 0.907 3.093
28 H -0.280 1.280
29 H -0.292 1.292
30 H -0.292 1.292
31 H 0.052 0.948
32 H 0.068 0.932
33 H 0.060 0.940
34 H 0.073 0.927
35 H 0.074 0.926
36 H 0.100 0.900
37 H 0.100 0.900
38 H 0.413 0.587
39 H 0.130 0.870
40 H 0.131 0.869
41 H 0.127 0.873
42 H 0.130 0.870
43 H 0.136 0.864
44 H 0.090 0.910
45 H 0.077 0.923
46 H 0.026 0.974
47 H 0.025 0.975
48 H 0.383 0.617
49 H 0.255 0.745
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.103 0.092 25.839 27.080
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.203 4.203
2 C -0.118 4.118
3 H 0.102 0.898
4 C -0.023 4.023
5 N -0.349 5.349
6 C 0.312 3.688
7 O -0.415 6.415
8 C -0.022 4.022
9 N -0.369 5.369
10 C 0.350 3.650
11 O -0.417 6.417
12 C -0.138 4.138
13 C -0.102 4.102
14 C -0.145 4.145
15 C -0.112 4.112
16 C -0.148 4.148
17 C -0.078 4.078
18 C -0.005 4.005
19 C -0.123 4.123
20 H 0.101 0.899
21 C 0.037 3.963
22 N -0.378 5.378
23 C -0.371 4.371
24 H 0.089 0.911
25 C -0.210 4.210
26 N -0.580 5.580
27 Si 0.738 3.262
28 H -0.206 1.206
29 H -0.219 1.219
30 H -0.219 1.219
31 H 0.071 0.929
32 H 0.087 0.913
33 H 0.079 0.921
34 H 0.091 0.909
35 H 0.092 0.908
36 H 0.118 0.882
37 H 0.118 0.882
38 H 0.252 0.748
39 H 0.148 0.852
40 H 0.148 0.852
41 H 0.145 0.855
42 H 0.148 0.852
43 H 0.154 0.846
44 H 0.108 0.892
45 H 0.095 0.905
46 H 0.043 0.957
47 H 0.042 0.958
48 H 0.217 0.783
49 H 0.065 0.935
Dipole moment (debyes) X Y Z Total
from point charges 7.998 0.182 25.970 27.174
hybrid contribution -0.092 -0.539 -1.256 1.370
sum 7.906 -0.357 24.714 25.950
Atomic orbital electron populations
1.21910 0.93868 1.02503 1.02022 1.22038 0.96782 0.99374 0.93600
0.89771 1.22354 0.94761 0.88128 0.97067 1.48775 1.32717 1.34832
1.18561 1.19995 0.79176 0.82383 0.87199 1.90726 1.53331 1.29955
1.67489 1.21050 0.91326 0.96625 0.93178 1.45640 1.35129 1.38427
1.17689 1.18254 0.82550 0.83370 0.80854 1.90773 1.62142 1.33468
1.55354 1.19878 0.98486 0.98851 0.96571 1.21439 0.95733 0.93882
0.99188 1.21167 0.96672 1.00070 0.96565 1.21422 0.98942 0.96919
0.93962 1.21179 0.97027 0.96224 1.00382 1.21294 0.94301 0.98021
0.94222 1.22549 0.99720 0.97494 0.80755 1.22468 1.00487 0.94504
0.94885 0.89881 1.20718 0.93260 0.96192 0.86142 1.42417 1.13045
1.72065 1.10317 1.19245 0.94434 1.32667 0.90804 0.91107 1.24759
0.96295 1.01595 0.98343 1.69674 1.12471 1.46450 1.29394 0.86125
0.79301 0.77419 0.83378 1.20553 1.21887 1.21881 0.92910 0.91278
0.92106 0.90884 0.90759 0.88214 0.88192 0.74809 0.85230 0.85154
0.85489 0.85239 0.84576 0.89172 0.90494 0.95671 0.95776 0.78295
0.93524
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.48 7.78 37.16 0.29 -1.19 16
2 C -0.10 -1.07 3.53 -89.25 -0.32 -1.38 16
3 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16
4 C 0.10 0.97 6.42 -2.98 -0.02 0.95 16
5 N -0.62 -7.91 3.29 -169.98 -0.56 -8.47 16
6 C 0.52 7.04 7.96 -10.98 -0.09 6.96 16
7 O -0.54 -9.05 15.88 5.56 0.09 -8.96 16
8 C 0.11 1.12 5.23 -5.19 -0.03 1.09 16
9 N -0.71 -7.83 5.48 -62.42 -0.34 -8.18 16
10 C 0.56 6.59 7.77 -12.33 -0.10 6.49 16
11 O -0.54 -7.67 16.35 5.32 0.09 -7.59 16
12 C -0.13 -1.33 5.87 -104.97 -0.62 -1.95 16
13 C -0.08 -0.70 9.54 -39.19 -0.37 -1.07 16
14 C -0.13 -0.88 10.03 -39.64 -0.40 -1.28 16
15 C -0.09 -0.59 10.04 -39.49 -0.40 -0.99 16
16 C -0.13 -0.88 10.03 -39.64 -0.40 -1.28 16
17 C -0.06 -0.52 9.60 -39.18 -0.38 -0.90 16
18 C 0.12 1.80 6.44 -2.31 -0.01 1.78 16
19 C -0.10 -1.55 2.99 -88.93 -0.27 -1.82 16
20 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16
21 C 0.16 3.06 4.44 -4.04 -0.02 3.04 16
22 N -0.73 -18.05 5.52 -59.90 -0.33 -18.38 16
23 C -0.24 -6.62 9.99 -15.06 -0.15 -6.77 16
24 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16
25 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16
26 N -0.93 -28.21 13.06 55.49 0.72 -27.48 16
27 Si 0.91 22.32 29.55 -169.99 -5.02 17.30 16
28 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16
29 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16
30 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16
31 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16
32 H 0.07 0.77 6.76 -51.93 -0.35 0.42 16
33 H 0.06 0.66 7.51 -51.93 -0.39 0.27 16
34 H 0.07 0.62 7.68 -51.93 -0.40 0.22 16
35 H 0.07 0.58 7.54 -51.93 -0.39 0.19 16
36 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16
37 H 0.10 0.97 7.91 -51.93 -0.41 0.56 16
38 H 0.41 4.39 5.47 -40.82 -0.22 4.16 16
39 H 0.13 0.96 6.41 -52.49 -0.34 0.62 16
40 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16
41 H 0.13 0.49 8.06 -52.49 -0.42 0.07 16
42 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16
43 H 0.14 1.18 7.65 -52.49 -0.40 0.77 16
44 H 0.09 1.66 7.85 -51.93 -0.41 1.25 16
45 H 0.08 1.20 7.93 -51.93 -0.41 0.79 16
46 H 0.03 0.47 6.80 -51.93 -0.35 0.11 16
47 H 0.02 0.45 7.37 -51.93 -0.38 0.07 16
48 H 0.38 10.06 7.67 -40.82 -0.31 9.75 16
49 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16
LS Contribution 401.05 15.07 6.04 6.04
Total: -1.00 -34.38 401.05 -9.95 -44.33
By element:
Atomic # 1 Polarization: 17.47 SS G_CDS: -7.28 Total: 10.19 kcal
Atomic # 6 Polarization: 4.55 SS G_CDS: -3.36 Total: 1.19 kcal
Atomic # 7 Polarization: -62.00 SS G_CDS: -0.51 Total: -62.51 kcal
Atomic # 8 Polarization: -16.72 SS G_CDS: 0.18 Total: -16.54 kcal
Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal
Total LS contribution 6.04 Total: 6.04 kcal
Total: -34.38 -9.95 -44.33 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001699967730.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 15.873 kcal
(2) G-P(sol) polarization free energy of solvation -34.379 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.506 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.948 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.327 kcal
(6) G-S(sol) free energy of system = (1) + (5) -28.454 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.97 seconds