Wall clock time and date at job start Wed Apr 1 2020 02:55:15
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 H 1.08998 * 110.29047 * 2 1
4 4 C 1.54005 * 110.32281 * 122.13485 * 2 1 3
5 5 N 1.47490 * 107.08237 * 120.19885 * 4 2 1
6 6 C 1.34777 * 127.03149 * 154.51761 * 5 4 2
7 7 O 1.21278 * 119.99854 * 180.02562 * 6 5 4
8 8 C 1.50703 * 120.00161 * 0.02562 * 6 5 4
9 9 N 1.46505 * 109.47064 * 180.02562 * 8 6 5
10 10 C 1.34771 * 119.99622 * 179.97438 * 9 8 6
11 11 O 1.21548 * 120.00715 * 0.02562 * 10 9 8
12 12 C 1.47851 * 119.99564 * 180.02562 * 10 9 8
13 13 C 1.39574 * 120.14597 * 359.72565 * 12 10 9
14 14 C 1.37955 * 119.85528 * 179.79279 * 13 12 10
15 15 C 1.38368 * 120.14012 * 0.48530 * 14 13 12
16 16 C 1.38353 * 120.29558 * 359.74783 * 15 14 13
17 17 C 1.37963 * 120.14252 * 0.02562 * 16 15 14
18 18 C 1.48114 * 105.93301 * 334.77436 * 5 4 2
19 19 C 1.54599 * 103.41982 * 39.02681 * 18 5 4
20 20 H 1.08995 * 110.73056 * 81.24344 * 19 18 5
21 21 C 1.53003 * 110.83180 * 204.44696 * 19 18 5
22 22 N 1.46503 * 109.46977 * 288.56124 * 21 19 18
23 23 C 1.36939 * 119.99908 * 179.97438 * 22 21 19
24 24 H 1.07995 * 119.99931 * 0.02562 * 23 22 21
25 25 C 1.38814 * 119.99976 * 179.97438 * 23 22 21
26 26 N 1.31621 * 119.99921 * 0.02562 * 25 23 22
27 27 Si 1.86799 * 120.00173 * 180.02562 * 25 23 22
28 28 H 1.48504 * 109.46843 * 359.97438 * 27 25 23
29 29 H 1.48496 * 109.47079 * 120.00010 * 27 25 23
30 30 H 1.48499 * 109.47054 * 240.00167 * 27 25 23
31 31 H 1.09001 * 109.46952 * 299.31970 * 1 2 3
32 32 H 1.09000 * 109.47094 * 59.31973 * 1 2 3
33 33 H 1.09005 * 109.47367 * 179.32340 * 1 2 3
34 34 H 1.09001 * 109.91884 * 0.83542 * 4 2 1
35 35 H 1.08998 * 109.91042 * 239.55499 * 4 2 1
36 36 H 1.09002 * 109.47152 * 60.00245 * 8 6 5
37 37 H 1.09001 * 109.46980 * 300.00345 * 8 6 5
38 38 H 0.96996 * 119.99606 * 0.02562 * 9 8 6
39 39 H 1.08000 * 120.07159 * 0.02562 * 13 12 10
40 40 H 1.08000 * 119.93065 * 180.23180 * 14 13 12
41 41 H 1.07998 * 119.84725 * 179.76789 * 15 14 13
42 42 H 1.07994 * 119.92817 * 180.02562 * 16 15 14
43 43 H 1.07998 * 120.07195 * 180.02562 * 17 16 15
44 44 H 1.08999 * 110.66097 * 157.51073 * 18 5 4
45 45 H 1.08994 * 110.66019 * 280.62855 * 18 5 4
46 46 H 1.09003 * 109.47460 * 48.55928 * 21 19 18
47 47 H 1.08999 * 109.47142 * 168.56396 * 21 19 18
48 48 H 0.97003 * 119.99866 * 0.02562 * 22 21 19
49 49 H 0.97003 * 119.99850 * 179.97438 * 26 25 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9080 1.0223 0.0000
4 6 2.0649 -0.7682 1.2229
5 7 2.8803 -1.8851 0.7103
6 6 3.8922 -2.5095 1.3449
7 8 4.4803 -3.4194 0.7998
8 6 4.2928 -2.0771 2.7319
9 7 5.4084 -2.9044 3.1982
10 6 5.9367 -2.6963 4.4204
11 8 5.4874 -1.8226 5.1361
12 6 7.0630 -3.5307 4.8907
13 6 7.5776 -4.5385 4.0737
14 6 8.6314 -5.3108 4.5168
15 6 9.1714 -5.0946 5.7723
16 6 8.6628 -4.1004 6.5891
17 6 7.6122 -3.3180 6.1561
18 6 2.3640 -2.1760 -0.6471
19 6 2.0671 -0.7736 -1.2262
20 1 2.9788 -0.3117 -1.6050
21 6 1.0051 -0.8522 -2.3249
22 7 1.5799 -1.4837 -3.5153
23 6 0.8108 -1.6633 -4.6340
24 1 -0.2193 -1.3390 -4.6389
25 6 1.3556 -2.2611 -5.7622
26 7 2.6112 -2.6559 -5.7564
27 14 0.3068 -2.5054 -7.2885
28 1 -1.0597 -1.9801 -7.0393
29 1 0.9169 -1.7776 -8.4300
30 1 0.2291 -3.9533 -7.6092
31 1 -0.3633 0.5032 0.8960
32 1 -0.3633 0.5244 -0.8838
33 1 -0.3634 -1.0276 -0.0121
34 1 1.2329 -1.1554 1.8112
35 1 2.6807 -0.1092 1.8349
36 1 3.4458 -2.1943 3.4079
37 1 4.5998 -1.0314 2.7120
38 1 5.7672 -3.6013 2.6268
39 1 7.1543 -4.7109 3.0952
40 1 9.0330 -6.0885 3.8841
41 1 9.9939 -5.7044 6.1159
42 1 9.0891 -3.9365 7.5677
43 1 7.2164 -2.5421 6.7945
44 1 3.1194 -2.6861 -1.2448
45 1 1.4507 -2.7684 -0.5924
46 1 0.1603 -1.4437 -1.9720
47 1 0.6658 0.1530 -2.5748
48 1 2.5051 -1.7753 -3.5108
49 1 2.9918 -3.0740 -6.5446
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001699967730.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 02:55:15
Heat of formation + Delta-G solvation = -51.557761 kcal
Electronic energy + Delta-G solvation = -29110.941623 eV
Core-core repulsion = 25037.170610 eV
Total energy + Delta-G solvation = -4073.771014 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 345.184 amu
Computer time = 1.26 seconds
Orbital eigenvalues (eV)
-41.68148 -41.00847 -39.53382 -39.03205 -36.46762 -35.73475 -34.39821 -32.86046
-32.46055 -31.89401 -30.82050 -29.17024 -27.34125 -26.77520 -25.07253 -24.39670
-23.45630 -23.25513 -21.58918 -20.72743 -20.34693 -19.47293 -18.86223 -18.06847
-17.52253 -17.23462 -17.07756 -16.82601 -16.42232 -16.27649 -15.95618 -15.53828
-15.46478 -15.32914 -15.26887 -14.82477 -14.65030 -14.42115 -14.17930 -13.87312
-13.82812 -13.50932 -13.47131 -13.30831 -13.07381 -12.92220 -12.79892 -12.70503
-12.62943 -12.11488 -12.04205 -11.85557 -11.65149 -11.53180 -11.36251 -11.24006
-11.14658 -10.91151 -10.45022 -9.97547 -9.93850 -9.84684 -8.98886 -7.95013
-5.23907 -0.18522 0.39478 1.34986 1.46896 1.47731 1.51137 1.57861
1.75849 2.18159 2.55781 2.87252 3.19779 3.38971 3.54340 3.59281
3.67696 3.84543 3.88676 4.00218 4.12217 4.19952 4.21207 4.24533
4.26376 4.37301 4.45058 4.51114 4.51585 4.58072 4.68316 4.79940
4.83112 4.83768 4.89092 5.01141 5.03120 5.04666 5.14984 5.22947
5.26316 5.32271 5.39750 5.42985 5.49494 5.51280 5.55761 5.92820
6.27173 6.28445 6.39043 6.85750 6.97407 7.32959 8.09942 8.30975
9.28908
Molecular weight = 345.18amu
Principal moments of inertia in cm(-1)
A = 0.016234 B = 0.001898 C = 0.001716
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1724.330725 B =14752.640612 C =16316.882350
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.144 4.144
2 C -0.088 4.088
3 H 0.103 0.897
4 C 0.098 3.902
5 N -0.613 5.613
6 C 0.522 3.478
7 O -0.580 6.580
8 C 0.113 3.887
9 N -0.713 5.713
10 C 0.562 3.438
11 O -0.570 6.570
12 C -0.158 4.158
13 C -0.093 4.093
14 C -0.132 4.132
15 C -0.089 4.089
16 C -0.129 4.129
17 C -0.073 4.073
18 C 0.121 3.879
19 C -0.097 4.097
20 H 0.067 0.933
21 C 0.166 3.834
22 N -0.749 5.749
23 C -0.240 4.240
24 H 0.080 0.920
25 C -0.080 4.080
26 N -0.972 5.972
27 Si 0.973 3.027
28 H -0.262 1.262
29 H -0.295 1.295
30 H -0.296 1.296
31 H 0.082 0.918
32 H 0.057 0.943
33 H 0.051 0.949
34 H 0.095 0.905
35 H 0.104 0.896
36 H 0.118 0.882
37 H 0.115 0.885
38 H 0.413 0.587
39 H 0.131 0.869
40 H 0.151 0.849
41 H 0.157 0.843
42 H 0.155 0.845
43 H 0.131 0.869
44 H 0.049 0.951
45 H 0.074 0.926
46 H 0.033 0.967
47 H 0.031 0.969
48 H 0.370 0.630
49 H 0.250 0.750
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.641 0.763 27.995 29.030
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.201 4.201
2 C -0.108 4.108
3 H 0.121 0.879
4 C -0.023 4.023
5 N -0.346 5.346
6 C 0.312 3.688
7 O -0.460 6.460
8 C -0.013 4.013
9 N -0.368 5.368
10 C 0.351 3.649
11 O -0.450 6.450
12 C -0.161 4.161
13 C -0.112 4.112
14 C -0.149 4.149
15 C -0.107 4.107
16 C -0.147 4.147
17 C -0.092 4.092
18 C -0.002 4.002
19 C -0.117 4.117
20 H 0.085 0.915
21 C 0.039 3.961
22 N -0.392 5.392
23 C -0.372 4.372
24 H 0.098 0.902
25 C -0.272 4.272
26 N -0.623 5.623
27 Si 0.803 3.197
28 H -0.187 1.187
29 H -0.222 1.222
30 H -0.223 1.223
31 H 0.101 0.899
32 H 0.076 0.924
33 H 0.070 0.930
34 H 0.113 0.887
35 H 0.122 0.878
36 H 0.135 0.865
37 H 0.133 0.867
38 H 0.253 0.747
39 H 0.149 0.851
40 H 0.168 0.832
41 H 0.175 0.825
42 H 0.173 0.827
43 H 0.149 0.851
44 H 0.068 0.932
45 H 0.092 0.908
46 H 0.050 0.950
47 H 0.049 0.951
48 H 0.202 0.798
49 H 0.058 0.942
Dipole moment (debyes) X Y Z Total
from point charges 7.482 0.895 28.163 29.153
hybrid contribution 0.065 -0.755 -1.859 2.008
sum 7.546 0.140 26.303 27.365
Atomic orbital electron populations
1.21902 0.92988 1.02214 1.03040 1.22048 0.97409 0.99803 0.91491
0.87853 1.22627 0.95518 0.87353 0.96822 1.48798 1.32808 1.35525
1.17425 1.20510 0.78614 0.81707 0.87997 1.90707 1.54750 1.31920
1.68665 1.21084 0.91882 0.97099 0.91252 1.45689 1.35139 1.38396
1.17601 1.18556 0.82693 0.83095 0.80525 1.90741 1.63302 1.34887
1.56113 1.19878 0.98835 0.99791 0.97596 1.21554 0.96408 0.93949
0.99245 1.21489 0.96043 1.00103 0.97301 1.21823 0.99058 0.96480
0.93314 1.21496 0.96097 0.95604 1.01505 1.21413 0.95244 0.98633
0.93937 1.22271 0.98332 0.97515 0.82088 1.22295 0.98945 0.94867
0.95583 0.91479 1.20883 0.94293 0.95705 0.85173 1.42688 1.12440
1.72424 1.11602 1.19693 0.94918 1.30991 0.91564 0.90214 1.25607
0.97544 1.02463 1.01616 1.69843 1.14344 1.48197 1.29945 0.85066
0.78456 0.76780 0.79431 1.18650 1.22191 1.22337 0.89893 0.92362
0.92982 0.88679 0.87776 0.86454 0.86709 0.74724 0.85089 0.83151
0.82504 0.82733 0.85109 0.93197 0.90827 0.94954 0.95099 0.79831
0.94155
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.51 7.78 71.98 0.56 -1.95 16
2 C -0.09 -1.69 3.53 -9.90 -0.03 -1.72 16
3 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16
4 C 0.10 1.61 6.42 86.53 0.56 2.16 16
5 N -0.61 -15.33 3.29 -810.08 -2.67 -18.00 16
6 C 0.52 13.97 7.96 87.66 0.70 14.66 16
7 O -0.58 -20.31 15.88 -3.02 -0.05 -20.36 16
8 C 0.11 2.29 5.23 85.63 0.45 2.73 16
9 N -0.71 -15.66 5.48 -469.69 -2.57 -18.23 16
10 C 0.56 13.25 7.77 86.79 0.67 13.92 16
11 O -0.57 -16.18 16.35 -3.87 -0.06 -16.24 16
12 C -0.16 -3.14 5.87 -20.09 -0.12 -3.25 16
13 C -0.09 -1.53 9.54 22.53 0.21 -1.31 16
14 C -0.13 -1.61 10.03 22.23 0.22 -1.39 16
15 C -0.09 -0.89 10.04 22.33 0.22 -0.66 16
16 C -0.13 -1.51 10.03 22.23 0.22 -1.29 16
17 C -0.07 -1.26 9.60 22.53 0.22 -1.05 16
18 C 0.12 3.85 6.44 86.61 0.56 4.40 16
19 C -0.10 -2.89 2.99 -9.70 -0.03 -2.92 16
20 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16
21 C 0.17 6.14 4.44 86.38 0.38 6.52 16
22 N -0.75 -37.69 5.52 -343.44 -1.90 -39.59 16
23 C -0.24 -13.31 9.99 84.03 0.84 -12.47 16
24 H 0.08 4.20 7.83 -2.91 -0.02 4.17 16
25 C -0.08 -4.66 5.50 84.86 0.47 -4.20 16
26 N -0.97 -60.75 13.06 21.65 0.28 -60.46 16
27 Si 0.97 46.45 29.55 68.60 2.03 48.47 16
28 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16
29 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16
30 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16
31 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16
32 H 0.06 1.16 6.76 -2.39 -0.02 1.14 16
33 H 0.05 1.00 7.51 -2.38 -0.02 0.99 16
34 H 0.10 1.23 7.68 -2.39 -0.02 1.21 16
35 H 0.10 1.17 7.54 -2.39 -0.02 1.15 16
36 H 0.12 1.99 8.14 -2.39 -0.02 1.97 16
37 H 0.12 2.01 7.91 -2.39 -0.02 1.99 16
38 H 0.41 9.06 5.47 -92.71 -0.51 8.55 16
39 H 0.13 2.00 6.41 -2.91 -0.02 1.98 16
40 H 0.15 1.17 8.06 -2.91 -0.02 1.15 16
41 H 0.16 0.62 8.06 -2.91 -0.02 0.60 16
42 H 0.16 0.95 8.06 -2.91 -0.02 0.93 16
43 H 0.13 2.29 7.65 -2.91 -0.02 2.27 16
44 H 0.05 1.98 7.85 -2.39 -0.02 1.96 16
45 H 0.07 2.36 7.93 -2.39 -0.02 2.35 16
46 H 0.03 1.18 6.80 -2.39 -0.02 1.16 16
47 H 0.03 1.13 7.37 -2.39 -0.02 1.11 16
48 H 0.37 20.34 7.67 -92.71 -0.71 19.62 16
49 H 0.25 15.13 8.31 -92.71 -0.77 14.36 16
Total: -1.00 -77.41 401.05 0.92 -76.49
By element:
Atomic # 1 Polarization: 35.97 SS G_CDS: -0.24 Total: 35.73 kcal
Atomic # 6 Polarization: 6.09 SS G_CDS: 6.10 Total: 12.20 kcal
Atomic # 7 Polarization: -129.44 SS G_CDS: -6.85 Total: -136.29 kcal
Atomic # 8 Polarization: -36.49 SS G_CDS: -0.11 Total: -36.60 kcal
Atomic # 14 Polarization: 46.45 SS G_CDS: 2.03 Total: 48.47 kcal
Total: -77.41 0.92 -76.49 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001699967730.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 24.929 kcal
(2) G-P(sol) polarization free energy of solvation -77.411 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.482 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.925 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.486 kcal
(6) G-S(sol) free energy of system = (1) + (5) -51.558 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.26 seconds