Wall clock time and date at job start Wed Apr 1 2020 02:55:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 110.29047 * 2 1 4 4 C 1.54005 * 110.32281 * 122.13485 * 2 1 3 5 5 N 1.47490 * 107.08237 * 120.19885 * 4 2 1 6 6 C 1.34777 * 127.03149 * 154.51761 * 5 4 2 7 7 O 1.21278 * 119.99854 * 180.02562 * 6 5 4 8 8 C 1.50703 * 120.00161 * 0.02562 * 6 5 4 9 9 N 1.46505 * 109.47064 * 180.02562 * 8 6 5 10 10 C 1.34771 * 119.99622 * 179.97438 * 9 8 6 11 11 O 1.21548 * 120.00715 * 0.02562 * 10 9 8 12 12 C 1.47851 * 119.99564 * 180.02562 * 10 9 8 13 13 C 1.39574 * 120.14597 * 359.72565 * 12 10 9 14 14 C 1.37955 * 119.85528 * 179.79279 * 13 12 10 15 15 C 1.38368 * 120.14012 * 0.48530 * 14 13 12 16 16 C 1.38353 * 120.29558 * 359.74783 * 15 14 13 17 17 C 1.37963 * 120.14252 * 0.02562 * 16 15 14 18 18 C 1.48114 * 105.93301 * 334.77436 * 5 4 2 19 19 C 1.54599 * 103.41982 * 39.02681 * 18 5 4 20 20 H 1.08995 * 110.73056 * 81.24344 * 19 18 5 21 21 C 1.53003 * 110.83180 * 204.44696 * 19 18 5 22 22 N 1.46503 * 109.46977 * 288.56124 * 21 19 18 23 23 C 1.36939 * 119.99908 * 179.97438 * 22 21 19 24 24 H 1.07995 * 119.99931 * 0.02562 * 23 22 21 25 25 C 1.38814 * 119.99976 * 179.97438 * 23 22 21 26 26 N 1.31621 * 119.99921 * 0.02562 * 25 23 22 27 27 Si 1.86799 * 120.00173 * 180.02562 * 25 23 22 28 28 H 1.48504 * 109.46843 * 359.97438 * 27 25 23 29 29 H 1.48496 * 109.47079 * 120.00010 * 27 25 23 30 30 H 1.48499 * 109.47054 * 240.00167 * 27 25 23 31 31 H 1.09001 * 109.46952 * 299.31970 * 1 2 3 32 32 H 1.09000 * 109.47094 * 59.31973 * 1 2 3 33 33 H 1.09005 * 109.47367 * 179.32340 * 1 2 3 34 34 H 1.09001 * 109.91884 * 0.83542 * 4 2 1 35 35 H 1.08998 * 109.91042 * 239.55499 * 4 2 1 36 36 H 1.09002 * 109.47152 * 60.00245 * 8 6 5 37 37 H 1.09001 * 109.46980 * 300.00345 * 8 6 5 38 38 H 0.96996 * 119.99606 * 0.02562 * 9 8 6 39 39 H 1.08000 * 120.07159 * 0.02562 * 13 12 10 40 40 H 1.08000 * 119.93065 * 180.23180 * 14 13 12 41 41 H 1.07998 * 119.84725 * 179.76789 * 15 14 13 42 42 H 1.07994 * 119.92817 * 180.02562 * 16 15 14 43 43 H 1.07998 * 120.07195 * 180.02562 * 17 16 15 44 44 H 1.08999 * 110.66097 * 157.51073 * 18 5 4 45 45 H 1.08994 * 110.66019 * 280.62855 * 18 5 4 46 46 H 1.09003 * 109.47460 * 48.55928 * 21 19 18 47 47 H 1.08999 * 109.47142 * 168.56396 * 21 19 18 48 48 H 0.97003 * 119.99866 * 0.02562 * 22 21 19 49 49 H 0.97003 * 119.99850 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9080 1.0223 0.0000 4 6 2.0649 -0.7682 1.2229 5 7 2.8803 -1.8851 0.7103 6 6 3.8922 -2.5095 1.3449 7 8 4.4803 -3.4194 0.7998 8 6 4.2928 -2.0771 2.7319 9 7 5.4084 -2.9044 3.1982 10 6 5.9367 -2.6963 4.4204 11 8 5.4874 -1.8226 5.1361 12 6 7.0630 -3.5307 4.8907 13 6 7.5776 -4.5385 4.0737 14 6 8.6314 -5.3108 4.5168 15 6 9.1714 -5.0946 5.7723 16 6 8.6628 -4.1004 6.5891 17 6 7.6122 -3.3180 6.1561 18 6 2.3640 -2.1760 -0.6471 19 6 2.0671 -0.7736 -1.2262 20 1 2.9788 -0.3117 -1.6050 21 6 1.0051 -0.8522 -2.3249 22 7 1.5799 -1.4837 -3.5153 23 6 0.8108 -1.6633 -4.6340 24 1 -0.2193 -1.3390 -4.6389 25 6 1.3556 -2.2611 -5.7622 26 7 2.6112 -2.6559 -5.7564 27 14 0.3068 -2.5054 -7.2885 28 1 -1.0597 -1.9801 -7.0393 29 1 0.9169 -1.7776 -8.4300 30 1 0.2291 -3.9533 -7.6092 31 1 -0.3633 0.5032 0.8960 32 1 -0.3633 0.5244 -0.8838 33 1 -0.3634 -1.0276 -0.0121 34 1 1.2329 -1.1554 1.8112 35 1 2.6807 -0.1092 1.8349 36 1 3.4458 -2.1943 3.4079 37 1 4.5998 -1.0314 2.7120 38 1 5.7672 -3.6013 2.6268 39 1 7.1543 -4.7109 3.0952 40 1 9.0330 -6.0885 3.8841 41 1 9.9939 -5.7044 6.1159 42 1 9.0891 -3.9365 7.5677 43 1 7.2164 -2.5421 6.7945 44 1 3.1194 -2.6861 -1.2448 45 1 1.4507 -2.7684 -0.5924 46 1 0.1603 -1.4437 -1.9720 47 1 0.6658 0.1530 -2.5748 48 1 2.5051 -1.7753 -3.5108 49 1 2.9918 -3.0740 -6.5446 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699967730.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:15 Heat of formation + Delta-G solvation = -51.557761 kcal Electronic energy + Delta-G solvation = -29110.941623 eV Core-core repulsion = 25037.170610 eV Total energy + Delta-G solvation = -4073.771014 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.68148 -41.00847 -39.53382 -39.03205 -36.46762 -35.73475 -34.39821 -32.86046 -32.46055 -31.89401 -30.82050 -29.17024 -27.34125 -26.77520 -25.07253 -24.39670 -23.45630 -23.25513 -21.58918 -20.72743 -20.34693 -19.47293 -18.86223 -18.06847 -17.52253 -17.23462 -17.07756 -16.82601 -16.42232 -16.27649 -15.95618 -15.53828 -15.46478 -15.32914 -15.26887 -14.82477 -14.65030 -14.42115 -14.17930 -13.87312 -13.82812 -13.50932 -13.47131 -13.30831 -13.07381 -12.92220 -12.79892 -12.70503 -12.62943 -12.11488 -12.04205 -11.85557 -11.65149 -11.53180 -11.36251 -11.24006 -11.14658 -10.91151 -10.45022 -9.97547 -9.93850 -9.84684 -8.98886 -7.95013 -5.23907 -0.18522 0.39478 1.34986 1.46896 1.47731 1.51137 1.57861 1.75849 2.18159 2.55781 2.87252 3.19779 3.38971 3.54340 3.59281 3.67696 3.84543 3.88676 4.00218 4.12217 4.19952 4.21207 4.24533 4.26376 4.37301 4.45058 4.51114 4.51585 4.58072 4.68316 4.79940 4.83112 4.83768 4.89092 5.01141 5.03120 5.04666 5.14984 5.22947 5.26316 5.32271 5.39750 5.42985 5.49494 5.51280 5.55761 5.92820 6.27173 6.28445 6.39043 6.85750 6.97407 7.32959 8.09942 8.30975 9.28908 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.016234 B = 0.001898 C = 0.001716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.330725 B =14752.640612 C =16316.882350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.088 4.088 3 H 0.103 0.897 4 C 0.098 3.902 5 N -0.613 5.613 6 C 0.522 3.478 7 O -0.580 6.580 8 C 0.113 3.887 9 N -0.713 5.713 10 C 0.562 3.438 11 O -0.570 6.570 12 C -0.158 4.158 13 C -0.093 4.093 14 C -0.132 4.132 15 C -0.089 4.089 16 C -0.129 4.129 17 C -0.073 4.073 18 C 0.121 3.879 19 C -0.097 4.097 20 H 0.067 0.933 21 C 0.166 3.834 22 N -0.749 5.749 23 C -0.240 4.240 24 H 0.080 0.920 25 C -0.080 4.080 26 N -0.972 5.972 27 Si 0.973 3.027 28 H -0.262 1.262 29 H -0.295 1.295 30 H -0.296 1.296 31 H 0.082 0.918 32 H 0.057 0.943 33 H 0.051 0.949 34 H 0.095 0.905 35 H 0.104 0.896 36 H 0.118 0.882 37 H 0.115 0.885 38 H 0.413 0.587 39 H 0.131 0.869 40 H 0.151 0.849 41 H 0.157 0.843 42 H 0.155 0.845 43 H 0.131 0.869 44 H 0.049 0.951 45 H 0.074 0.926 46 H 0.033 0.967 47 H 0.031 0.969 48 H 0.370 0.630 49 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.641 0.763 27.995 29.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.108 4.108 3 H 0.121 0.879 4 C -0.023 4.023 5 N -0.346 5.346 6 C 0.312 3.688 7 O -0.460 6.460 8 C -0.013 4.013 9 N -0.368 5.368 10 C 0.351 3.649 11 O -0.450 6.450 12 C -0.161 4.161 13 C -0.112 4.112 14 C -0.149 4.149 15 C -0.107 4.107 16 C -0.147 4.147 17 C -0.092 4.092 18 C -0.002 4.002 19 C -0.117 4.117 20 H 0.085 0.915 21 C 0.039 3.961 22 N -0.392 5.392 23 C -0.372 4.372 24 H 0.098 0.902 25 C -0.272 4.272 26 N -0.623 5.623 27 Si 0.803 3.197 28 H -0.187 1.187 29 H -0.222 1.222 30 H -0.223 1.223 31 H 0.101 0.899 32 H 0.076 0.924 33 H 0.070 0.930 34 H 0.113 0.887 35 H 0.122 0.878 36 H 0.135 0.865 37 H 0.133 0.867 38 H 0.253 0.747 39 H 0.149 0.851 40 H 0.168 0.832 41 H 0.175 0.825 42 H 0.173 0.827 43 H 0.149 0.851 44 H 0.068 0.932 45 H 0.092 0.908 46 H 0.050 0.950 47 H 0.049 0.951 48 H 0.202 0.798 49 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 7.482 0.895 28.163 29.153 hybrid contribution 0.065 -0.755 -1.859 2.008 sum 7.546 0.140 26.303 27.365 Atomic orbital electron populations 1.21902 0.92988 1.02214 1.03040 1.22048 0.97409 0.99803 0.91491 0.87853 1.22627 0.95518 0.87353 0.96822 1.48798 1.32808 1.35525 1.17425 1.20510 0.78614 0.81707 0.87997 1.90707 1.54750 1.31920 1.68665 1.21084 0.91882 0.97099 0.91252 1.45689 1.35139 1.38396 1.17601 1.18556 0.82693 0.83095 0.80525 1.90741 1.63302 1.34887 1.56113 1.19878 0.98835 0.99791 0.97596 1.21554 0.96408 0.93949 0.99245 1.21489 0.96043 1.00103 0.97301 1.21823 0.99058 0.96480 0.93314 1.21496 0.96097 0.95604 1.01505 1.21413 0.95244 0.98633 0.93937 1.22271 0.98332 0.97515 0.82088 1.22295 0.98945 0.94867 0.95583 0.91479 1.20883 0.94293 0.95705 0.85173 1.42688 1.12440 1.72424 1.11602 1.19693 0.94918 1.30991 0.91564 0.90214 1.25607 0.97544 1.02463 1.01616 1.69843 1.14344 1.48197 1.29945 0.85066 0.78456 0.76780 0.79431 1.18650 1.22191 1.22337 0.89893 0.92362 0.92982 0.88679 0.87776 0.86454 0.86709 0.74724 0.85089 0.83151 0.82504 0.82733 0.85109 0.93197 0.90827 0.94954 0.95099 0.79831 0.94155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.51 7.78 71.98 0.56 -1.95 16 2 C -0.09 -1.69 3.53 -9.90 -0.03 -1.72 16 3 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 4 C 0.10 1.61 6.42 86.53 0.56 2.16 16 5 N -0.61 -15.33 3.29 -810.08 -2.67 -18.00 16 6 C 0.52 13.97 7.96 87.66 0.70 14.66 16 7 O -0.58 -20.31 15.88 -3.02 -0.05 -20.36 16 8 C 0.11 2.29 5.23 85.63 0.45 2.73 16 9 N -0.71 -15.66 5.48 -469.69 -2.57 -18.23 16 10 C 0.56 13.25 7.77 86.79 0.67 13.92 16 11 O -0.57 -16.18 16.35 -3.87 -0.06 -16.24 16 12 C -0.16 -3.14 5.87 -20.09 -0.12 -3.25 16 13 C -0.09 -1.53 9.54 22.53 0.21 -1.31 16 14 C -0.13 -1.61 10.03 22.23 0.22 -1.39 16 15 C -0.09 -0.89 10.04 22.33 0.22 -0.66 16 16 C -0.13 -1.51 10.03 22.23 0.22 -1.29 16 17 C -0.07 -1.26 9.60 22.53 0.22 -1.05 16 18 C 0.12 3.85 6.44 86.61 0.56 4.40 16 19 C -0.10 -2.89 2.99 -9.70 -0.03 -2.92 16 20 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 21 C 0.17 6.14 4.44 86.38 0.38 6.52 16 22 N -0.75 -37.69 5.52 -343.44 -1.90 -39.59 16 23 C -0.24 -13.31 9.99 84.03 0.84 -12.47 16 24 H 0.08 4.20 7.83 -2.91 -0.02 4.17 16 25 C -0.08 -4.66 5.50 84.86 0.47 -4.20 16 26 N -0.97 -60.75 13.06 21.65 0.28 -60.46 16 27 Si 0.97 46.45 29.55 68.60 2.03 48.47 16 28 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 29 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 30 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 31 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.06 1.16 6.76 -2.39 -0.02 1.14 16 33 H 0.05 1.00 7.51 -2.38 -0.02 0.99 16 34 H 0.10 1.23 7.68 -2.39 -0.02 1.21 16 35 H 0.10 1.17 7.54 -2.39 -0.02 1.15 16 36 H 0.12 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.12 2.01 7.91 -2.39 -0.02 1.99 16 38 H 0.41 9.06 5.47 -92.71 -0.51 8.55 16 39 H 0.13 2.00 6.41 -2.91 -0.02 1.98 16 40 H 0.15 1.17 8.06 -2.91 -0.02 1.15 16 41 H 0.16 0.62 8.06 -2.91 -0.02 0.60 16 42 H 0.16 0.95 8.06 -2.91 -0.02 0.93 16 43 H 0.13 2.29 7.65 -2.91 -0.02 2.27 16 44 H 0.05 1.98 7.85 -2.39 -0.02 1.96 16 45 H 0.07 2.36 7.93 -2.39 -0.02 2.35 16 46 H 0.03 1.18 6.80 -2.39 -0.02 1.16 16 47 H 0.03 1.13 7.37 -2.39 -0.02 1.11 16 48 H 0.37 20.34 7.67 -92.71 -0.71 19.62 16 49 H 0.25 15.13 8.31 -92.71 -0.77 14.36 16 Total: -1.00 -77.41 401.05 0.92 -76.49 By element: Atomic # 1 Polarization: 35.97 SS G_CDS: -0.24 Total: 35.73 kcal Atomic # 6 Polarization: 6.09 SS G_CDS: 6.10 Total: 12.20 kcal Atomic # 7 Polarization: -129.44 SS G_CDS: -6.85 Total: -136.29 kcal Atomic # 8 Polarization: -36.49 SS G_CDS: -0.11 Total: -36.60 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 2.03 Total: 48.47 kcal Total: -77.41 0.92 -76.49 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699967730.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.929 kcal (2) G-P(sol) polarization free energy of solvation -77.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds