Wall clock time and date at job start Wed Apr 1 2020 04:47:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.47463 * 2 1 4 4 C 1.52995 * 109.47153 * 119.99733 * 2 1 3 5 5 C 1.50701 * 109.47295 * 295.00371 * 4 2 1 6 6 O 1.21283 * 119.99923 * 359.97438 * 5 4 2 7 7 N 1.34775 * 120.00085 * 180.02562 * 5 4 2 8 8 C 1.46496 * 119.99973 * 179.97438 * 7 5 4 9 9 H 1.08994 * 110.97616 * 322.30959 * 8 7 5 10 10 C 1.55021 * 111.10467 * 86.45467 * 8 7 5 11 11 O 1.43911 * 105.18234 * 81.95610 * 10 8 7 12 12 C 1.42391 * 109.55584 * 24.29253 * 11 10 8 13 13 C 1.52707 * 116.14328 * 129.84680 * 12 11 10 14 14 N 1.47219 * 87.79334 * 90.70657 * 13 12 11 15 15 C 1.36931 * 135.97128 * 206.43699 * 14 13 12 16 16 H 1.08002 * 120.00438 * 0.02562 * 15 14 13 17 17 C 1.38817 * 119.99680 * 179.72306 * 15 14 13 18 18 N 1.31614 * 119.99888 * 0.27479 * 17 15 14 19 19 Si 1.86803 * 119.99862 * 180.27671 * 17 15 14 20 20 H 1.48508 * 109.46872 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47141 * 119.99997 * 19 17 15 22 22 H 1.48498 * 109.47018 * 240.00044 * 19 17 15 23 23 C 1.47216 * 88.05150 * 26.69097 * 14 13 12 24 24 C 1.53659 * 108.53510 * 358.08998 * 12 11 10 25 25 C 1.50705 * 109.47200 * 239.99829 * 2 1 3 26 26 C 1.38648 * 120.78707 * 299.71823 * 25 2 1 27 27 C 1.38210 * 119.15823 * 179.75162 * 26 25 2 28 28 N 1.31869 * 120.76554 * 0.53776 * 27 26 25 29 29 C 1.31873 * 121.72630 * 359.73692 * 28 27 26 30 30 C 1.38213 * 120.76307 * 359.97438 * 29 28 27 31 31 H 1.09000 * 109.47086 * 300.00769 * 1 2 3 32 32 H 1.09009 * 109.46885 * 60.00349 * 1 2 3 33 33 H 1.08996 * 109.47616 * 179.97438 * 1 2 3 34 34 H 1.09003 * 109.47612 * 174.99722 * 4 2 1 35 35 H 1.09002 * 109.46944 * 54.99934 * 4 2 1 36 36 H 0.97000 * 119.99887 * 359.97438 * 7 5 4 37 37 H 1.09000 * 110.29717 * 323.03184 * 10 8 7 38 38 H 1.08999 * 110.30468 * 200.88599 * 10 8 7 39 39 H 1.08999 * 113.49372 * 335.97682 * 13 12 11 40 40 H 1.08994 * 113.55796 * 205.44429 * 13 12 11 41 41 H 0.97005 * 119.99715 * 179.97438 * 18 17 15 42 42 H 1.09003 * 113.49350 * 88.04070 * 23 14 13 43 43 H 1.08998 * 113.49476 * 218.57645 * 23 14 13 44 44 H 1.09006 * 110.93065 * 97.29560 * 24 12 11 45 45 H 1.08997 * 110.93072 * 220.95444 * 24 12 11 46 46 H 1.07995 * 120.42080 * 0.02562 * 26 25 2 47 47 H 1.07996 * 119.61654 * 180.29934 * 27 26 25 48 48 H 1.07992 * 119.61857 * 179.97438 * 29 28 27 49 49 H 1.07993 * 120.41435 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6412 0.0571 2.4766 6 8 1.0116 1.0875 2.3632 7 7 1.9852 -0.3913 3.7001 8 6 1.5981 0.3656 4.8932 9 1 1.6664 1.4385 4.7138 10 6 0.1772 -0.0313 5.3693 11 8 0.3594 -1.2353 6.1363 12 6 1.6921 -1.2857 6.6350 13 6 1.8415 -1.5707 8.1278 14 7 1.9045 -3.0022 7.7902 15 6 1.6103 -4.1780 8.4275 16 1 1.2284 -4.1638 9.4376 17 6 1.7970 -5.3878 7.7729 18 7 2.2619 -5.4050 6.5418 19 14 1.3883 -6.9914 8.6396 20 1 0.8864 -6.7012 10.0068 21 1 0.3444 -7.7168 7.8720 22 1 2.6100 -7.8309 8.7292 23 6 2.4285 -2.6163 6.4697 24 6 2.4520 -0.0519 6.1237 25 6 2.0323 -0.7105 -1.2305 26 6 1.7122 -2.0393 -1.4631 27 6 2.1868 -2.6563 -2.6051 28 7 2.9438 -1.9992 -3.4619 29 6 3.2728 -0.7366 -3.2702 30 6 2.8303 -0.0524 -2.1538 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 -0.3634 -1.0276 -0.0005 34 1 3.1263 -0.7995 1.2056 35 1 1.6053 -1.7197 1.2952 36 1 2.4892 -1.2151 3.7907 37 1 -0.4689 -0.2228 4.5126 38 1 -0.2456 0.7550 5.9946 39 1 0.9620 -1.3002 8.7120 40 1 2.7668 -1.1838 8.5547 41 1 2.3927 -6.2505 6.0845 42 1 3.5133 -2.5126 6.4460 43 1 2.0446 -3.2288 5.6539 44 1 2.4637 0.7374 6.8754 45 1 3.4657 -0.3160 5.8227 46 1 1.0961 -2.5840 -0.7631 47 1 1.9380 -3.6897 -2.7961 48 1 3.8951 -0.2314 -3.9939 49 1 3.1028 0.9816 -2.0027 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700213457.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:03 Heat of formation + Delta-G solvation = 13.738849 kcal Electronic energy + Delta-G solvation = -30157.286463 eV Core-core repulsion = 26086.346923 eV Total energy + Delta-G solvation = -4070.939540 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -40.74934 -40.29705 -39.24765 -36.51134 -35.77864 -34.25618 -32.15571 -31.58693 -31.30964 -30.56475 -28.49182 -27.60696 -25.73428 -24.81951 -24.58514 -23.67556 -22.38536 -21.63964 -20.77275 -20.13508 -19.06781 -17.64934 -16.94038 -16.62691 -16.52421 -16.31911 -15.79020 -15.49593 -15.36000 -14.98731 -14.59370 -14.40704 -14.31288 -13.96403 -13.79941 -13.57764 -13.37896 -13.35597 -13.17235 -12.82388 -12.67916 -12.12397 -12.08363 -11.81050 -11.56625 -11.48516 -11.44882 -11.40244 -11.13011 -11.04776 -10.87040 -10.48900 -10.31028 -9.90328 -9.83349 -9.73835 -9.65652 -9.52906 -9.40182 -9.15385 -8.86070 -8.59574 -6.90212 -5.78079 -3.09035 0.88584 0.98768 2.55273 3.07774 3.38682 3.43941 3.46445 3.57110 4.12613 4.20991 4.26107 4.38204 4.43516 4.52219 4.67329 4.81263 4.87393 4.89170 4.91387 4.99260 5.03178 5.17325 5.21192 5.33833 5.38168 5.40794 5.44817 5.46129 5.54242 5.55622 5.65992 5.77284 5.81990 5.84688 5.87790 5.89210 6.00231 6.13289 6.21774 6.34461 6.44690 6.47308 6.51175 6.58704 6.86452 7.14089 7.45282 7.50004 7.72858 7.76129 7.97042 8.16057 9.02633 9.69484 10.61314 11.40040 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011429 B = 0.002533 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2449.233250 B =11050.820607 C =12850.369076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.035 4.035 3 H 0.090 0.910 4 C -0.137 4.137 5 C 0.518 3.482 6 O -0.543 6.543 7 N -0.713 5.713 8 C 0.112 3.888 9 H 0.102 0.898 10 C 0.040 3.960 11 O -0.334 6.334 12 C 0.054 3.946 13 C 0.110 3.890 14 N -0.602 5.602 15 C -0.212 4.212 16 H 0.082 0.918 17 C -0.009 4.009 18 N -0.921 5.921 19 Si 0.913 3.087 20 H -0.279 1.279 21 H -0.290 1.290 22 H -0.291 1.291 23 C 0.153 3.847 24 C -0.144 4.144 25 C -0.031 4.031 26 C -0.167 4.167 27 C 0.099 3.901 28 N -0.491 5.491 29 C 0.097 3.903 30 C -0.170 4.170 31 H 0.083 0.917 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.096 0.904 35 H 0.100 0.900 36 H 0.408 0.592 37 H 0.082 0.918 38 H 0.065 0.935 39 H 0.046 0.954 40 H 0.043 0.957 41 H 0.252 0.748 42 H 0.034 0.966 43 H 0.077 0.923 44 H 0.090 0.910 45 H 0.089 0.911 46 H 0.136 0.864 47 H 0.155 0.845 48 H 0.154 0.846 49 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.593 13.757 -15.255 20.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.054 4.054 3 H 0.109 0.891 4 C -0.177 4.177 5 C 0.305 3.695 6 O -0.421 6.421 7 N -0.364 5.364 8 C 0.007 3.993 9 H 0.120 0.880 10 C -0.038 4.038 11 O -0.253 6.253 12 C 0.012 3.988 13 C -0.017 4.017 14 N -0.327 5.327 15 C -0.340 4.340 16 H 0.099 0.901 17 C -0.205 4.205 18 N -0.568 5.568 19 Si 0.744 3.256 20 H -0.205 1.205 21 H -0.217 1.217 22 H -0.218 1.218 23 C 0.027 3.973 24 C -0.183 4.183 25 C -0.039 4.039 26 C -0.186 4.186 27 C -0.057 4.057 28 N -0.201 5.201 29 C -0.059 4.059 30 C -0.190 4.190 31 H 0.102 0.898 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.114 0.886 35 H 0.118 0.882 36 H 0.243 0.757 37 H 0.100 0.900 38 H 0.083 0.917 39 H 0.064 0.936 40 H 0.060 0.940 41 H 0.062 0.938 42 H 0.052 0.948 43 H 0.095 0.905 44 H 0.109 0.891 45 H 0.107 0.893 46 H 0.154 0.846 47 H 0.173 0.827 48 H 0.171 0.829 49 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 1.245 13.514 -15.972 20.959 hybrid contribution 0.024 -0.801 1.284 1.513 sum 1.269 12.713 -14.688 19.467 Atomic orbital electron populations 1.21972 0.93115 1.02159 1.03472 1.19912 0.97154 0.99140 0.89201 0.89147 1.21760 1.03308 1.00625 0.91992 1.20536 0.78935 0.85488 0.84527 1.90656 1.40046 1.24704 1.86736 1.45954 1.57430 1.27880 1.05131 1.22553 0.94901 0.97024 0.84848 0.87963 1.23834 0.96282 0.88519 0.95209 1.88460 1.28283 1.39638 1.68884 1.23483 0.83258 0.95480 0.96536 1.22710 0.98430 0.87081 0.93464 1.45397 1.74299 0.99494 1.13524 1.18957 1.36338 0.81631 0.97031 0.90067 1.24766 1.01652 0.97454 0.96635 1.69816 1.50886 1.24785 1.11333 0.86023 0.77533 0.83526 0.78556 1.20458 1.21670 1.21775 1.22418 0.94199 0.88968 0.91735 1.23226 1.00066 0.98867 0.96180 1.20356 0.94126 0.93907 0.95524 1.22085 1.01892 0.95269 0.99401 1.22790 0.92883 0.99998 0.90026 1.67680 1.12443 1.09215 1.30719 1.22754 0.96924 0.90436 0.95822 1.22095 0.99565 1.01581 0.95789 0.89791 0.92768 0.92778 0.88585 0.88189 0.75687 0.89963 0.91729 0.93580 0.93952 0.93794 0.94836 0.90498 0.89137 0.89292 0.84608 0.82729 0.82893 0.84823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 8.76 37.16 0.33 -1.11 16 2 C -0.04 -0.31 2.24 -91.77 -0.21 -0.52 16 3 H 0.09 0.84 7.76 -51.93 -0.40 0.43 16 4 C -0.14 -1.23 4.92 -27.88 -0.14 -1.37 16 5 C 0.52 6.04 7.55 -10.99 -0.08 5.96 16 6 O -0.54 -7.64 13.72 5.55 0.08 -7.56 16 7 N -0.71 -8.46 5.24 -51.50 -0.27 -8.73 16 8 C 0.11 1.40 3.37 -65.54 -0.22 1.18 16 9 H 0.10 1.20 7.74 -51.93 -0.40 0.80 16 10 C 0.04 0.58 7.49 38.23 0.29 0.87 16 11 O -0.33 -6.49 11.18 -35.23 -0.39 -6.89 16 12 C 0.05 0.97 1.75 -90.45 -0.16 0.81 16 13 C 0.11 2.24 8.20 -8.06 -0.07 2.17 16 14 N -0.60 -15.52 3.78 -184.57 -0.70 -16.22 16 15 C -0.21 -6.02 10.74 -15.06 -0.16 -6.18 16 16 H 0.08 2.23 7.83 -52.49 -0.41 1.82 16 17 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 18 N -0.92 -27.00 11.51 55.49 0.64 -26.36 16 19 Si 0.91 22.22 29.55 -169.99 -5.02 17.20 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 21 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 22 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 23 C 0.15 3.43 6.89 -7.92 -0.05 3.37 16 24 C -0.14 -1.86 5.97 -25.07 -0.15 -2.01 16 25 C -0.03 -0.27 4.80 -104.32 -0.50 -0.77 16 26 C -0.17 -1.45 8.89 -39.44 -0.35 -1.80 16 27 C 0.10 0.92 11.18 -17.55 -0.20 0.72 16 28 N -0.49 -5.18 10.36 -13.25 -0.14 -5.32 16 29 C 0.10 0.85 11.18 -17.54 -0.20 0.65 16 30 C -0.17 -1.39 9.76 -39.44 -0.39 -1.78 16 31 H 0.08 0.97 5.95 -51.93 -0.31 0.66 16 32 H 0.05 0.49 8.14 -51.92 -0.42 0.07 16 33 H 0.05 0.49 7.50 -51.93 -0.39 0.10 16 34 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.10 0.85 7.65 -51.93 -0.40 0.45 16 36 H 0.41 4.72 8.62 -40.82 -0.35 4.37 16 37 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 38 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.04 0.79 8.13 -51.93 -0.42 0.37 16 41 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 42 H 0.03 0.73 7.95 -51.93 -0.41 0.32 16 43 H 0.08 1.95 7.13 -51.93 -0.37 1.58 16 44 H 0.09 1.01 8.13 -51.93 -0.42 0.58 16 45 H 0.09 1.06 7.81 -51.93 -0.41 0.65 16 46 H 0.14 1.01 7.35 -52.49 -0.39 0.62 16 47 H 0.16 1.10 8.06 -52.49 -0.42 0.67 16 48 H 0.15 0.94 8.06 -52.49 -0.42 0.52 16 49 H 0.13 0.83 8.01 -52.49 -0.42 0.41 16 LS Contribution 398.54 15.07 6.01 6.01 Total: -1.00 -34.55 398.54 -9.75 -44.30 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: -7.60 Total: 3.73 kcal Atomic # 6 Polarization: 2.20 SS G_CDS: -2.35 Total: -0.15 kcal Atomic # 7 Polarization: -56.17 SS G_CDS: -0.47 Total: -56.63 kcal Atomic # 8 Polarization: -14.13 SS G_CDS: -0.32 Total: -14.45 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -34.55 -9.75 -44.30 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700213457.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.042 kcal (2) G-P(sol) polarization free energy of solvation -34.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds