Wall clock time and date at job start Wed Apr 1 2020 04:47:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.47463 * 2 1 4 4 C 1.52995 * 109.47153 * 119.99733 * 2 1 3 5 5 C 1.50701 * 109.47295 * 295.00371 * 4 2 1 6 6 O 1.21283 * 119.99923 * 359.97438 * 5 4 2 7 7 N 1.34775 * 120.00085 * 180.02562 * 5 4 2 8 8 C 1.46496 * 119.99973 * 179.97438 * 7 5 4 9 9 H 1.08994 * 110.97616 * 322.30959 * 8 7 5 10 10 C 1.55021 * 111.10467 * 86.45467 * 8 7 5 11 11 O 1.43911 * 105.18234 * 81.95610 * 10 8 7 12 12 C 1.42391 * 109.55584 * 24.29253 * 11 10 8 13 13 C 1.52707 * 116.14328 * 129.84680 * 12 11 10 14 14 N 1.47219 * 87.79334 * 90.70657 * 13 12 11 15 15 C 1.36931 * 135.97128 * 206.43699 * 14 13 12 16 16 H 1.08002 * 120.00438 * 0.02562 * 15 14 13 17 17 C 1.38817 * 119.99680 * 179.72306 * 15 14 13 18 18 N 1.31614 * 119.99888 * 0.27479 * 17 15 14 19 19 Si 1.86803 * 119.99862 * 180.27671 * 17 15 14 20 20 H 1.48508 * 109.46872 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47141 * 119.99997 * 19 17 15 22 22 H 1.48498 * 109.47018 * 240.00044 * 19 17 15 23 23 C 1.47216 * 88.05150 * 26.69097 * 14 13 12 24 24 C 1.53659 * 108.53510 * 358.08998 * 12 11 10 25 25 C 1.50705 * 109.47200 * 239.99829 * 2 1 3 26 26 C 1.38648 * 120.78707 * 299.71823 * 25 2 1 27 27 C 1.38210 * 119.15823 * 179.75162 * 26 25 2 28 28 N 1.31869 * 120.76554 * 0.53776 * 27 26 25 29 29 C 1.31873 * 121.72630 * 359.73692 * 28 27 26 30 30 C 1.38213 * 120.76307 * 359.97438 * 29 28 27 31 31 H 1.09000 * 109.47086 * 300.00769 * 1 2 3 32 32 H 1.09009 * 109.46885 * 60.00349 * 1 2 3 33 33 H 1.08996 * 109.47616 * 179.97438 * 1 2 3 34 34 H 1.09003 * 109.47612 * 174.99722 * 4 2 1 35 35 H 1.09002 * 109.46944 * 54.99934 * 4 2 1 36 36 H 0.97000 * 119.99887 * 359.97438 * 7 5 4 37 37 H 1.09000 * 110.29717 * 323.03184 * 10 8 7 38 38 H 1.08999 * 110.30468 * 200.88599 * 10 8 7 39 39 H 1.08999 * 113.49372 * 335.97682 * 13 12 11 40 40 H 1.08994 * 113.55796 * 205.44429 * 13 12 11 41 41 H 0.97005 * 119.99715 * 179.97438 * 18 17 15 42 42 H 1.09003 * 113.49350 * 88.04070 * 23 14 13 43 43 H 1.08998 * 113.49476 * 218.57645 * 23 14 13 44 44 H 1.09006 * 110.93065 * 97.29560 * 24 12 11 45 45 H 1.08997 * 110.93072 * 220.95444 * 24 12 11 46 46 H 1.07995 * 120.42080 * 0.02562 * 26 25 2 47 47 H 1.07996 * 119.61654 * 180.29934 * 27 26 25 48 48 H 1.07992 * 119.61857 * 179.97438 * 29 28 27 49 49 H 1.07993 * 120.41435 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6412 0.0571 2.4766 6 8 1.0116 1.0875 2.3632 7 7 1.9852 -0.3913 3.7001 8 6 1.5981 0.3656 4.8932 9 1 1.6664 1.4385 4.7138 10 6 0.1772 -0.0313 5.3693 11 8 0.3594 -1.2353 6.1363 12 6 1.6921 -1.2857 6.6350 13 6 1.8415 -1.5707 8.1278 14 7 1.9045 -3.0022 7.7902 15 6 1.6103 -4.1780 8.4275 16 1 1.2284 -4.1638 9.4376 17 6 1.7970 -5.3878 7.7729 18 7 2.2619 -5.4050 6.5418 19 14 1.3883 -6.9914 8.6396 20 1 0.8864 -6.7012 10.0068 21 1 0.3444 -7.7168 7.8720 22 1 2.6100 -7.8309 8.7292 23 6 2.4285 -2.6163 6.4697 24 6 2.4520 -0.0519 6.1237 25 6 2.0323 -0.7105 -1.2305 26 6 1.7122 -2.0393 -1.4631 27 6 2.1868 -2.6563 -2.6051 28 7 2.9438 -1.9992 -3.4619 29 6 3.2728 -0.7366 -3.2702 30 6 2.8303 -0.0524 -2.1538 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 -0.3634 -1.0276 -0.0005 34 1 3.1263 -0.7995 1.2056 35 1 1.6053 -1.7197 1.2952 36 1 2.4892 -1.2151 3.7907 37 1 -0.4689 -0.2228 4.5126 38 1 -0.2456 0.7550 5.9946 39 1 0.9620 -1.3002 8.7120 40 1 2.7668 -1.1838 8.5547 41 1 2.3927 -6.2505 6.0845 42 1 3.5133 -2.5126 6.4460 43 1 2.0446 -3.2288 5.6539 44 1 2.4637 0.7374 6.8754 45 1 3.4657 -0.3160 5.8227 46 1 1.0961 -2.5840 -0.7631 47 1 1.9380 -3.6897 -2.7961 48 1 3.8951 -0.2314 -3.9939 49 1 3.1028 0.9816 -2.0027 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700213457.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:02 Heat of formation + Delta-G solvation = -9.656479 kcal Electronic energy + Delta-G solvation = -30158.300961 eV Core-core repulsion = 26086.346923 eV Total energy + Delta-G solvation = -4071.954038 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.74842 -41.23509 -40.34012 -37.94848 -36.64951 -35.36672 -34.17182 -32.34848 -32.06063 -31.55978 -30.02893 -28.56912 -27.32468 -26.50083 -25.32204 -24.33677 -23.90555 -22.83092 -21.73188 -20.96053 -20.55408 -18.74270 -18.45618 -17.79553 -17.32043 -17.14215 -16.97608 -16.56047 -16.40122 -16.34472 -15.87469 -15.80642 -15.25845 -15.01990 -14.90688 -14.71605 -14.60939 -14.39654 -14.25995 -14.01981 -13.61643 -13.46756 -13.16944 -12.98658 -12.86556 -12.74609 -12.66501 -12.55353 -12.38197 -12.27536 -12.21314 -11.91236 -11.75077 -11.54341 -11.34274 -10.93955 -10.79726 -10.46442 -10.36809 -10.35883 -10.04201 -9.90619 -8.90758 -7.90333 -5.21606 0.24736 0.31477 1.44402 1.45804 1.55567 1.63665 2.18395 2.46738 2.82762 2.90547 3.30294 3.37019 3.51675 3.62616 3.64962 3.66619 3.70323 3.81383 3.94959 4.06658 4.13210 4.17141 4.24410 4.28011 4.39633 4.47208 4.67445 4.69923 4.72112 4.74438 4.76041 4.77292 4.79894 4.91902 4.92880 4.94263 4.95166 5.05393 5.09736 5.16003 5.17384 5.29071 5.35773 5.49410 5.51775 5.56166 5.82717 5.94893 6.36731 6.53954 6.92661 7.07352 7.23631 7.60559 8.61299 9.27402 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011429 B = 0.002533 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2449.233250 B =11050.820607 C =12850.369076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.027 4.027 3 H 0.089 0.911 4 C -0.133 4.133 5 C 0.519 3.481 6 O -0.567 6.567 7 N -0.714 5.714 8 C 0.121 3.879 9 H 0.120 0.880 10 C 0.035 3.965 11 O -0.372 6.372 12 C 0.076 3.924 13 C 0.107 3.893 14 N -0.641 5.641 15 C -0.227 4.227 16 H 0.080 0.920 17 C -0.067 4.067 18 N -0.949 5.949 19 Si 0.977 3.023 20 H -0.268 1.268 21 H -0.293 1.293 22 H -0.289 1.289 23 C 0.152 3.848 24 C -0.129 4.129 25 C -0.036 4.036 26 C -0.171 4.171 27 C 0.086 3.914 28 N -0.519 5.519 29 C 0.088 3.912 30 C -0.170 4.170 31 H 0.064 0.936 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.112 0.888 35 H 0.104 0.896 36 H 0.409 0.591 37 H 0.073 0.927 38 H 0.085 0.915 39 H 0.042 0.958 40 H 0.071 0.929 41 H 0.248 0.752 42 H 0.041 0.959 43 H 0.038 0.962 44 H 0.121 0.879 45 H 0.104 0.896 46 H 0.145 0.855 47 H 0.169 0.831 48 H 0.175 0.825 49 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.330 15.301 -15.261 21.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.046 4.046 3 H 0.107 0.893 4 C -0.173 4.173 5 C 0.307 3.693 6 O -0.446 6.446 7 N -0.365 5.365 8 C 0.015 3.985 9 H 0.138 0.862 10 C -0.042 4.042 11 O -0.291 6.291 12 C 0.035 3.965 13 C -0.019 4.019 14 N -0.367 5.367 15 C -0.355 4.355 16 H 0.097 0.903 17 C -0.260 4.260 18 N -0.598 5.598 19 Si 0.806 3.194 20 H -0.192 1.192 21 H -0.220 1.220 22 H -0.216 1.216 23 C 0.026 3.974 24 C -0.168 4.168 25 C -0.044 4.044 26 C -0.191 4.191 27 C -0.070 4.070 28 N -0.228 5.228 29 C -0.068 4.068 30 C -0.190 4.190 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.130 0.870 35 H 0.123 0.877 36 H 0.244 0.756 37 H 0.092 0.908 38 H 0.103 0.897 39 H 0.060 0.940 40 H 0.088 0.912 41 H 0.057 0.943 42 H 0.058 0.942 43 H 0.057 0.943 44 H 0.139 0.861 45 H 0.123 0.877 46 H 0.163 0.837 47 H 0.186 0.814 48 H 0.193 0.807 49 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 1.984 15.094 -15.969 22.063 hybrid contribution -0.259 -1.224 1.281 1.790 sum 1.725 13.870 -14.688 20.275 Atomic orbital electron populations 1.21913 0.93793 1.02077 1.02618 1.19805 0.96480 0.99058 0.89222 0.89254 1.21777 1.04349 1.00332 0.90793 1.20915 0.78202 0.85212 0.84970 1.90650 1.41065 1.25861 1.87059 1.46028 1.57356 1.27910 1.05251 1.22510 0.93195 0.97893 0.84870 0.86182 1.24033 0.97802 0.87448 0.94940 1.88422 1.29013 1.42149 1.69541 1.23090 0.83203 0.95460 0.94732 1.22955 0.99366 0.84283 0.95270 1.45807 1.74821 1.00869 1.15219 1.19296 1.35733 0.83277 0.97196 0.90264 1.25584 1.02370 1.00549 0.97516 1.69989 1.52222 1.25016 1.12535 0.85025 0.77008 0.79473 0.77921 1.19218 1.22031 1.21573 1.22427 0.94748 0.90913 0.89274 1.23194 0.99902 0.96886 0.96768 1.20388 0.94484 0.93985 0.95591 1.22214 1.01939 0.95471 0.99458 1.23079 0.92932 1.00793 0.90158 1.67693 1.13309 1.10267 1.31560 1.23171 0.97027 0.90094 0.96519 1.22331 0.98905 1.02482 0.95247 0.91745 0.92406 0.92499 0.86960 0.87730 0.75561 0.90827 0.89711 0.93964 0.91168 0.94329 0.94191 0.94329 0.86107 0.87732 0.83744 0.81401 0.80749 0.82821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.71 8.76 71.98 0.63 -2.08 16 2 C -0.03 -0.44 2.24 -11.54 -0.03 -0.47 16 3 H 0.09 1.51 7.76 -2.38 -0.02 1.49 16 4 C -0.13 -2.21 4.92 29.85 0.15 -2.06 16 5 C 0.52 11.37 7.55 87.66 0.66 12.03 16 6 O -0.57 -15.19 13.72 -3.04 -0.04 -15.23 16 7 N -0.71 -15.82 5.24 -435.25 -2.28 -18.10 16 8 C 0.12 2.71 3.37 46.54 0.16 2.87 16 9 H 0.12 2.39 7.74 -2.39 -0.02 2.37 16 10 C 0.04 0.97 7.49 72.67 0.54 1.52 16 11 O -0.37 -14.28 11.18 -148.98 -1.67 -15.94 16 12 C 0.08 2.67 1.75 -10.68 -0.02 2.65 16 13 C 0.11 4.22 8.20 83.39 0.68 4.90 16 14 N -0.64 -33.32 3.78 -738.92 -2.80 -36.12 16 15 C -0.23 -13.05 10.74 84.04 0.90 -12.14 16 16 H 0.08 4.41 7.83 -2.91 -0.02 4.39 16 17 C -0.07 -3.87 5.50 84.86 0.47 -3.41 16 18 N -0.95 -57.00 11.51 21.65 0.25 -56.75 16 19 Si 0.98 46.35 29.55 68.60 2.03 48.38 16 20 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 21 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 22 H -0.29 -13.49 7.11 99.48 0.71 -12.79 16 23 C 0.15 6.86 6.89 83.48 0.58 7.43 16 24 C -0.13 -2.91 5.97 31.67 0.19 -2.72 16 25 C -0.04 -0.58 4.80 -19.67 -0.09 -0.68 16 26 C -0.17 -2.82 8.89 22.36 0.20 -2.62 16 27 C 0.09 1.54 11.18 84.68 0.95 2.49 16 28 N -0.52 -10.54 10.36 -195.84 -2.03 -12.57 16 29 C 0.09 1.42 11.18 84.68 0.95 2.37 16 30 C -0.17 -2.48 9.76 22.36 0.22 -2.26 16 31 H 0.06 1.46 5.95 -2.39 -0.01 1.45 16 32 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 33 H 0.06 0.99 7.50 -2.39 -0.02 0.97 16 34 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.10 1.67 7.65 -2.39 -0.02 1.65 16 36 H 0.41 9.00 8.62 -92.71 -0.80 8.20 16 37 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 38 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 39 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 40 H 0.07 2.41 8.13 -2.39 -0.02 2.39 16 41 H 0.25 14.40 8.31 -92.70 -0.77 13.63 16 42 H 0.04 1.73 7.95 -2.39 -0.02 1.71 16 43 H 0.04 2.01 7.13 -2.39 -0.02 2.00 16 44 H 0.12 2.10 8.13 -2.38 -0.02 2.08 16 45 H 0.10 2.11 7.81 -2.39 -0.02 2.09 16 46 H 0.14 2.03 7.35 -2.91 -0.02 2.01 16 47 H 0.17 2.31 8.06 -2.91 -0.02 2.29 16 48 H 0.18 1.84 8.06 -2.91 -0.02 1.82 16 49 H 0.15 1.54 8.01 -2.91 -0.02 1.52 16 Total: -1.00 -76.29 398.54 0.75 -75.54 By element: Atomic # 1 Polarization: 22.83 SS G_CDS: 0.16 Total: 22.99 kcal Atomic # 6 Polarization: 0.68 SS G_CDS: 7.13 Total: 7.81 kcal Atomic # 7 Polarization: -116.68 SS G_CDS: -6.86 Total: -123.54 kcal Atomic # 8 Polarization: -29.47 SS G_CDS: -1.71 Total: -31.18 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 2.03 Total: 48.38 kcal Total: -76.29 0.75 -75.54 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700213457.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.883 kcal (2) G-P(sol) polarization free energy of solvation -76.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds