Wall clock time and date at job start Wed Apr 1 2020 04:47:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.47028 * 2 1 4 4 C 1.52995 * 109.47134 * 239.99744 * 2 1 3 5 5 C 1.50701 * 109.46992 * 65.00291 * 4 2 1 6 6 O 1.21281 * 120.00206 * 359.97438 * 5 4 2 7 7 N 1.34776 * 119.99668 * 180.02562 * 5 4 2 8 8 C 1.46507 * 119.99760 * 179.97438 * 7 5 4 9 9 H 1.08997 * 110.97352 * 37.68870 * 8 7 5 10 10 C 1.55018 * 111.10552 * 273.54382 * 8 7 5 11 11 O 1.43903 * 105.18003 * 206.03210 * 10 8 7 12 12 C 1.42394 * 109.56125 * 24.28913 * 11 10 8 13 13 C 1.52697 * 116.14237 * 129.85384 * 12 11 10 14 14 N 1.47212 * 87.80012 * 90.70544 * 13 12 11 15 15 C 1.36927 * 135.97634 * 206.43699 * 14 13 12 16 16 H 1.08006 * 120.00179 * 6.47823 * 15 14 13 17 17 C 1.38815 * 120.00379 * 186.48128 * 15 14 13 18 18 N 1.31623 * 119.99457 * 6.41318 * 17 15 14 19 19 Si 1.86799 * 120.00372 * 186.41303 * 17 15 14 20 20 H 1.48493 * 109.47229 * 265.02421 * 19 17 15 21 21 H 1.48503 * 109.46902 * 25.02062 * 19 17 15 22 22 H 1.48495 * 109.47086 * 145.01444 * 19 17 15 23 23 C 1.47213 * 88.04942 * 26.68953 * 14 13 12 24 24 C 1.53658 * 108.53183 * 358.09254 * 12 11 10 25 25 C 1.50706 * 109.46997 * 119.99403 * 2 1 3 26 26 C 1.38647 * 120.78487 * 59.72566 * 25 2 1 27 27 C 1.38206 * 119.15982 * 179.79387 * 26 25 2 28 28 N 1.31875 * 120.76093 * 0.48688 * 27 26 25 29 29 C 1.31864 * 121.72689 * 359.74212 * 28 27 26 30 30 C 1.38206 * 120.76617 * 0.02562 * 29 28 27 31 31 H 1.08998 * 109.47165 * 299.99956 * 1 2 3 32 32 H 1.08998 * 109.47411 * 60.00486 * 1 2 3 33 33 H 1.09003 * 109.46786 * 180.02562 * 1 2 3 34 34 H 1.08995 * 109.47117 * 304.99617 * 4 2 1 35 35 H 1.09001 * 109.46725 * 184.99449 * 4 2 1 36 36 H 0.96999 * 120.00804 * 359.97438 * 7 5 4 37 37 H 1.09002 * 110.29986 * 87.10347 * 10 8 7 38 38 H 1.09000 * 110.38145 * 325.00020 * 10 8 7 39 39 H 1.09001 * 113.50122 * 335.96953 * 13 12 11 40 40 H 1.09000 * 113.55549 * 205.45055 * 13 12 11 41 41 H 0.96996 * 119.99453 * 179.97438 * 18 17 15 42 42 H 1.09006 * 113.49648 * 88.04144 * 23 14 13 43 43 H 1.09004 * 113.49844 * 218.57582 * 23 14 13 44 44 H 1.08999 * 110.92919 * 97.29747 * 24 12 11 45 45 H 1.09002 * 110.93072 * 220.95800 * 24 12 11 46 46 H 1.07996 * 120.42562 * 359.97438 * 26 25 2 47 47 H 1.08002 * 119.62027 * 180.25125 * 27 26 25 48 48 H 1.08004 * 119.61836 * 180.02562 * 29 28 27 49 49 H 1.08002 * 120.41573 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4765 6 8 1.0110 1.0869 -2.3633 7 7 1.9845 -0.3920 -3.7001 8 6 1.5965 0.3643 -4.8933 9 1 1.6650 1.4373 -4.7145 10 6 0.1754 -0.0328 -5.3683 11 8 0.1569 0.2498 -6.7792 12 6 1.4863 0.2214 -7.2885 13 6 1.7108 -0.6301 -8.5360 14 7 1.4199 0.5696 -9.3380 15 6 0.9331 0.8207 -10.5930 16 1 0.5653 0.0082 -11.2022 17 6 0.9123 2.1196 -11.0824 18 7 1.4742 3.0910 -10.3946 19 14 0.0869 2.4888 -12.7169 20 1 1.1034 2.4741 -13.7993 21 1 -0.9458 1.4581 -12.9939 22 1 -0.5534 3.8273 -12.6570 23 6 1.8875 1.3809 -8.2022 24 6 2.4498 -0.0547 -6.1238 25 6 2.0324 -0.7103 1.2306 26 6 1.7027 -2.0357 1.4691 27 6 2.1854 -2.6555 2.6062 28 7 2.9424 -1.9982 3.4630 29 6 3.2720 -0.7360 3.2708 30 6 2.8303 -0.0522 2.1539 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5137 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 1.6055 -1.7198 -1.2950 35 1 3.1264 -0.7994 -1.2055 36 1 2.4884 -1.2159 -3.7907 37 1 -0.5764 0.5650 -4.8529 38 1 -0.0008 -1.0941 -5.1928 39 1 0.9742 -1.4241 -8.6586 40 1 2.7357 -0.9857 -8.6420 41 1 1.4600 3.9985 -10.7368 42 1 2.9607 1.5714 -8.2168 43 1 1.3001 2.2852 -8.0429 44 1 2.7095 -1.1122 -6.0757 45 1 3.3453 0.5615 -6.2047 46 1 1.0792 -2.5779 0.7738 47 1 1.9366 -3.6890 2.7973 48 1 3.8943 -0.2307 3.9945 49 1 3.1033 0.9817 2.0023 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700213458.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:07 Heat of formation + Delta-G solvation = 14.411294 kcal Electronic energy + Delta-G solvation = -29438.987696 eV Core-core repulsion = 25368.077315 eV Total energy + Delta-G solvation = -4070.910381 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -40.87375 -40.31424 -39.40891 -36.58207 -35.90838 -34.55922 -32.13252 -31.73564 -31.45818 -30.58764 -28.56073 -27.59390 -25.71683 -24.78509 -24.74514 -23.82982 -22.46007 -21.64358 -21.01004 -20.32413 -19.08350 -17.83956 -16.89197 -16.75518 -16.60499 -16.38199 -15.94456 -15.61363 -15.37737 -15.06810 -14.57571 -14.51470 -14.44516 -14.10465 -13.86146 -13.78369 -13.40759 -13.35797 -13.19314 -13.08054 -12.83490 -12.26457 -12.01250 -11.92349 -11.83520 -11.69675 -11.49746 -11.21375 -11.20253 -11.15484 -10.80438 -10.48296 -10.24089 -10.07001 -9.93667 -9.86259 -9.77578 -9.56163 -9.48412 -9.19308 -8.79445 -8.66555 -6.87082 -5.75630 -3.05629 0.72700 0.83022 2.39394 2.85840 3.41156 3.41699 3.46763 3.49493 4.03848 4.08326 4.17267 4.22087 4.44021 4.48362 4.51359 4.64718 4.69558 4.74053 4.75706 4.97075 5.00123 5.01801 5.16792 5.22256 5.23680 5.25381 5.29604 5.37904 5.39967 5.51034 5.61774 5.63238 5.72432 5.80707 5.84568 5.93538 5.99071 6.02171 6.09862 6.27942 6.30269 6.37338 6.52903 6.60065 6.92657 7.17255 7.26167 7.51867 7.57514 7.74541 7.99356 8.00344 9.05796 9.72704 10.65504 11.43649 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.035961 B = 0.001688 C = 0.001677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.423877 B =16584.127151 C =16695.628937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.038 4.038 3 H 0.092 0.908 4 C -0.134 4.134 5 C 0.513 3.487 6 O -0.531 6.531 7 N -0.718 5.718 8 C 0.112 3.888 9 H 0.107 0.893 10 C 0.042 3.958 11 O -0.333 6.333 12 C 0.057 3.943 13 C 0.111 3.889 14 N -0.602 5.602 15 C -0.215 4.215 16 H 0.081 0.919 17 C -0.008 4.008 18 N -0.920 5.920 19 Si 0.913 3.087 20 H -0.289 1.289 21 H -0.280 1.280 22 H -0.289 1.289 23 C 0.160 3.840 24 C -0.141 4.141 25 C -0.031 4.031 26 C -0.169 4.169 27 C 0.098 3.902 28 N -0.492 5.492 29 C 0.099 3.901 30 C -0.169 4.169 31 H 0.055 0.945 32 H 0.084 0.916 33 H 0.052 0.948 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.401 0.599 37 H 0.085 0.915 38 H 0.056 0.944 39 H 0.046 0.954 40 H 0.042 0.958 41 H 0.254 0.746 42 H 0.041 0.959 43 H 0.067 0.933 44 H 0.079 0.921 45 H 0.090 0.910 46 H 0.134 0.866 47 H 0.155 0.845 48 H 0.155 0.845 49 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.158 -11.188 26.594 29.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.057 4.057 3 H 0.111 0.889 4 C -0.174 4.174 5 C 0.300 3.700 6 O -0.407 6.407 7 N -0.371 5.371 8 C 0.007 3.993 9 H 0.125 0.875 10 C -0.037 4.037 11 O -0.251 6.251 12 C 0.015 3.985 13 C -0.015 4.015 14 N -0.327 5.327 15 C -0.343 4.343 16 H 0.099 0.901 17 C -0.205 4.205 18 N -0.567 5.567 19 Si 0.743 3.257 20 H -0.217 1.217 21 H -0.205 1.205 22 H -0.216 1.216 23 C 0.034 3.966 24 C -0.180 4.180 25 C -0.039 4.039 26 C -0.188 4.188 27 C -0.058 4.058 28 N -0.201 5.201 29 C -0.057 4.057 30 C -0.189 4.189 31 H 0.074 0.926 32 H 0.103 0.897 33 H 0.071 0.929 34 H 0.115 0.885 35 H 0.114 0.886 36 H 0.236 0.764 37 H 0.103 0.897 38 H 0.074 0.926 39 H 0.064 0.936 40 H 0.060 0.940 41 H 0.064 0.936 42 H 0.059 0.941 43 H 0.085 0.915 44 H 0.098 0.902 45 H 0.109 0.891 46 H 0.152 0.848 47 H 0.172 0.828 48 H 0.172 0.828 49 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 3.702 -10.609 26.969 29.216 hybrid contribution -0.122 0.184 -1.602 1.617 sum 3.580 -10.425 25.367 27.658 Atomic orbital electron populations 1.21977 0.93005 1.02000 1.03765 1.19939 0.97238 0.99371 0.89119 0.88946 1.21740 1.03200 1.00287 0.92160 1.20595 0.79200 0.85744 0.84496 1.90714 1.39230 1.24324 1.86474 1.45941 1.57884 1.27724 1.05523 1.22768 0.94744 0.97873 0.83928 0.87531 1.23744 0.96813 0.99919 0.83175 1.88477 1.25379 1.91339 1.19890 1.23402 0.81523 1.01780 0.91787 1.22687 0.97748 0.92501 0.88588 1.45481 1.73119 1.00884 1.13191 1.18910 1.32975 0.93143 0.89243 0.90102 1.24812 1.00966 0.95876 0.98797 1.69841 1.47814 1.00081 1.38966 0.86081 0.78978 0.77603 0.82989 1.21665 1.20503 1.21571 1.22318 0.96891 0.94375 0.83026 1.23131 0.99417 1.02290 0.93195 1.20352 0.94086 0.93887 0.95542 1.22034 1.01953 0.95338 0.99524 1.22778 0.92996 0.99963 0.90074 1.67684 1.12551 1.09298 1.30532 1.22782 0.96776 0.90377 0.95803 1.22135 0.99415 1.01663 0.95700 0.92609 0.89685 0.92913 0.88520 0.88625 0.76407 0.89687 0.92589 0.93609 0.94035 0.93641 0.94133 0.91454 0.90237 0.89136 0.84788 0.82807 0.82776 0.84679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 8.75 37.16 0.33 -0.86 16 2 C -0.04 -0.27 2.24 -91.77 -0.21 -0.47 16 3 H 0.09 0.75 7.76 -51.93 -0.40 0.35 16 4 C -0.13 -0.82 4.93 -27.89 -0.14 -0.96 16 5 C 0.51 4.94 7.55 -10.99 -0.08 4.86 16 6 O -0.53 -7.18 13.72 5.56 0.08 -7.10 16 7 N -0.72 -6.43 5.24 -51.50 -0.27 -6.70 16 8 C 0.11 1.41 3.37 -65.54 -0.22 1.19 16 9 H 0.11 1.55 7.74 -51.93 -0.40 1.15 16 10 C 0.04 0.61 7.49 38.22 0.29 0.90 16 11 O -0.33 -6.63 11.18 -35.23 -0.39 -7.02 16 12 C 0.06 1.06 1.75 -90.45 -0.16 0.90 16 13 C 0.11 2.31 8.20 -8.08 -0.07 2.24 16 14 N -0.60 -15.94 3.77 -184.61 -0.70 -16.64 16 15 C -0.22 -6.24 10.73 -15.06 -0.16 -6.40 16 16 H 0.08 2.25 7.84 -52.48 -0.41 1.84 16 17 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 18 N -0.92 -28.00 11.82 55.49 0.66 -27.34 16 19 Si 0.91 22.64 29.56 -169.99 -5.02 17.62 16 20 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 22 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 23 C 0.16 3.81 6.70 -7.94 -0.05 3.76 16 24 C -0.14 -1.85 6.03 -25.07 -0.15 -2.00 16 25 C -0.03 -0.21 4.80 -104.32 -0.50 -0.71 16 26 C -0.17 -1.04 8.89 -39.44 -0.35 -1.39 16 27 C 0.10 0.68 11.18 -17.54 -0.20 0.49 16 28 N -0.49 -4.28 10.36 -13.25 -0.14 -4.42 16 29 C 0.10 0.71 11.18 -17.55 -0.20 0.52 16 30 C -0.17 -1.12 9.76 -39.44 -0.39 -1.51 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.08 0.87 5.95 -51.93 -0.31 0.56 16 33 H 0.05 0.35 7.46 -51.93 -0.39 -0.04 16 34 H 0.10 0.42 7.68 -51.93 -0.40 0.02 16 35 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.40 2.39 8.51 -40.82 -0.35 2.05 16 37 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.04 0.79 8.13 -51.93 -0.42 0.37 16 41 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 42 H 0.04 0.95 7.95 -51.93 -0.41 0.54 16 43 H 0.07 1.82 7.60 -51.93 -0.39 1.43 16 44 H 0.08 0.84 7.96 -51.93 -0.41 0.42 16 45 H 0.09 1.14 7.81 -51.93 -0.41 0.73 16 46 H 0.13 0.57 7.35 -52.49 -0.39 0.19 16 47 H 0.15 0.70 8.06 -52.49 -0.42 0.28 16 48 H 0.15 0.74 8.06 -52.48 -0.42 0.32 16 49 H 0.14 0.68 8.01 -52.49 -0.42 0.26 16 LS Contribution 398.90 15.07 6.01 6.01 Total: -1.00 -36.21 398.90 -9.74 -45.95 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -7.61 Total: -0.57 kcal Atomic # 6 Polarization: 2.58 SS G_CDS: -2.35 Total: 0.23 kcal Atomic # 7 Polarization: -54.66 SS G_CDS: -0.45 Total: -55.10 kcal Atomic # 8 Polarization: -13.81 SS G_CDS: -0.32 Total: -14.13 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.02 Total: 17.62 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -36.21 -9.74 -45.95 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700213458.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.357 kcal (2) G-P(sol) polarization free energy of solvation -36.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds