Wall clock time and date at job start Wed Apr 1 2020 04:47:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.47028 * 2 1 4 4 C 1.52995 * 109.47134 * 239.99744 * 2 1 3 5 5 C 1.50701 * 109.46992 * 65.00291 * 4 2 1 6 6 O 1.21281 * 120.00206 * 359.97438 * 5 4 2 7 7 N 1.34776 * 119.99668 * 180.02562 * 5 4 2 8 8 C 1.46507 * 119.99760 * 179.97438 * 7 5 4 9 9 H 1.08997 * 110.97352 * 37.68870 * 8 7 5 10 10 C 1.55018 * 111.10552 * 273.54382 * 8 7 5 11 11 O 1.43903 * 105.18003 * 206.03210 * 10 8 7 12 12 C 1.42394 * 109.56125 * 24.28913 * 11 10 8 13 13 C 1.52697 * 116.14237 * 129.85384 * 12 11 10 14 14 N 1.47212 * 87.80012 * 90.70544 * 13 12 11 15 15 C 1.36927 * 135.97634 * 206.43699 * 14 13 12 16 16 H 1.08006 * 120.00179 * 6.47823 * 15 14 13 17 17 C 1.38815 * 120.00379 * 186.48128 * 15 14 13 18 18 N 1.31623 * 119.99457 * 6.41318 * 17 15 14 19 19 Si 1.86799 * 120.00372 * 186.41303 * 17 15 14 20 20 H 1.48493 * 109.47229 * 265.02421 * 19 17 15 21 21 H 1.48503 * 109.46902 * 25.02062 * 19 17 15 22 22 H 1.48495 * 109.47086 * 145.01444 * 19 17 15 23 23 C 1.47213 * 88.04942 * 26.68953 * 14 13 12 24 24 C 1.53658 * 108.53183 * 358.09254 * 12 11 10 25 25 C 1.50706 * 109.46997 * 119.99403 * 2 1 3 26 26 C 1.38647 * 120.78487 * 59.72566 * 25 2 1 27 27 C 1.38206 * 119.15982 * 179.79387 * 26 25 2 28 28 N 1.31875 * 120.76093 * 0.48688 * 27 26 25 29 29 C 1.31864 * 121.72689 * 359.74212 * 28 27 26 30 30 C 1.38206 * 120.76617 * 0.02562 * 29 28 27 31 31 H 1.08998 * 109.47165 * 299.99956 * 1 2 3 32 32 H 1.08998 * 109.47411 * 60.00486 * 1 2 3 33 33 H 1.09003 * 109.46786 * 180.02562 * 1 2 3 34 34 H 1.08995 * 109.47117 * 304.99617 * 4 2 1 35 35 H 1.09001 * 109.46725 * 184.99449 * 4 2 1 36 36 H 0.96999 * 120.00804 * 359.97438 * 7 5 4 37 37 H 1.09002 * 110.29986 * 87.10347 * 10 8 7 38 38 H 1.09000 * 110.38145 * 325.00020 * 10 8 7 39 39 H 1.09001 * 113.50122 * 335.96953 * 13 12 11 40 40 H 1.09000 * 113.55549 * 205.45055 * 13 12 11 41 41 H 0.96996 * 119.99453 * 179.97438 * 18 17 15 42 42 H 1.09006 * 113.49648 * 88.04144 * 23 14 13 43 43 H 1.09004 * 113.49844 * 218.57582 * 23 14 13 44 44 H 1.08999 * 110.92919 * 97.29747 * 24 12 11 45 45 H 1.09002 * 110.93072 * 220.95800 * 24 12 11 46 46 H 1.07996 * 120.42562 * 359.97438 * 26 25 2 47 47 H 1.08002 * 119.62027 * 180.25125 * 27 26 25 48 48 H 1.08004 * 119.61836 * 180.02562 * 29 28 27 49 49 H 1.08002 * 120.41573 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4765 6 8 1.0110 1.0869 -2.3633 7 7 1.9845 -0.3920 -3.7001 8 6 1.5965 0.3643 -4.8933 9 1 1.6650 1.4373 -4.7145 10 6 0.1754 -0.0328 -5.3683 11 8 0.1569 0.2498 -6.7792 12 6 1.4863 0.2214 -7.2885 13 6 1.7108 -0.6301 -8.5360 14 7 1.4199 0.5696 -9.3380 15 6 0.9331 0.8207 -10.5930 16 1 0.5653 0.0082 -11.2022 17 6 0.9123 2.1196 -11.0824 18 7 1.4742 3.0910 -10.3946 19 14 0.0869 2.4888 -12.7169 20 1 1.1034 2.4741 -13.7993 21 1 -0.9458 1.4581 -12.9939 22 1 -0.5534 3.8273 -12.6570 23 6 1.8875 1.3809 -8.2022 24 6 2.4498 -0.0547 -6.1238 25 6 2.0324 -0.7103 1.2306 26 6 1.7027 -2.0357 1.4691 27 6 2.1854 -2.6555 2.6062 28 7 2.9424 -1.9982 3.4630 29 6 3.2720 -0.7360 3.2708 30 6 2.8303 -0.0522 2.1539 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5137 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 1.6055 -1.7198 -1.2950 35 1 3.1264 -0.7994 -1.2055 36 1 2.4884 -1.2159 -3.7907 37 1 -0.5764 0.5650 -4.8529 38 1 -0.0008 -1.0941 -5.1928 39 1 0.9742 -1.4241 -8.6586 40 1 2.7357 -0.9857 -8.6420 41 1 1.4600 3.9985 -10.7368 42 1 2.9607 1.5714 -8.2168 43 1 1.3001 2.2852 -8.0429 44 1 2.7095 -1.1122 -6.0757 45 1 3.3453 0.5615 -6.2047 46 1 1.0792 -2.5779 0.7738 47 1 1.9366 -3.6890 2.7973 48 1 3.8943 -0.2307 3.9945 49 1 3.1033 0.9817 2.0023 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700213458.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:06 Heat of formation + Delta-G solvation = -11.374706 kcal Electronic energy + Delta-G solvation = -29440.105860 eV Core-core repulsion = 25368.077315 eV Total energy + Delta-G solvation = -4072.028546 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.69837 -41.23853 -40.42261 -37.99464 -36.67378 -35.59619 -34.20702 -32.34043 -32.04237 -31.54048 -30.02608 -28.49842 -27.33174 -26.55378 -25.30646 -24.31690 -23.94990 -22.84902 -21.89510 -20.99277 -20.58866 -18.79215 -18.43921 -17.69004 -17.34019 -17.11096 -17.04969 -16.43992 -16.37328 -16.33717 -16.20282 -15.58306 -15.28019 -15.07450 -14.95940 -14.74937 -14.69494 -14.43456 -14.26086 -14.02597 -13.60145 -13.49695 -13.33862 -13.09435 -12.83985 -12.77341 -12.69448 -12.59945 -12.38595 -12.26912 -12.23667 -11.76225 -11.72663 -11.65714 -11.34746 -10.91551 -10.81635 -10.45074 -10.34212 -10.30560 -10.04737 -10.01927 -8.95027 -7.94533 -5.25264 0.26961 0.33704 1.42698 1.45960 1.55067 1.65743 2.05959 2.46139 2.82479 2.92844 3.27897 3.32996 3.50626 3.59307 3.63149 3.67502 3.71130 3.77451 3.95247 4.08461 4.11277 4.20337 4.24402 4.27331 4.30224 4.49671 4.66248 4.68533 4.69962 4.74789 4.76963 4.81831 4.85350 4.89064 4.90007 4.95650 4.96635 5.03110 5.12724 5.15994 5.18256 5.19978 5.37370 5.46288 5.48422 5.56068 5.84976 5.89441 6.29971 6.58844 6.88182 7.10007 7.30617 7.57813 8.58856 9.25136 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.035961 B = 0.001688 C = 0.001677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.423877 B =16584.127151 C =16695.628937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.033 4.033 3 H 0.077 0.923 4 C -0.124 4.124 5 C 0.511 3.489 6 O -0.575 6.575 7 N -0.702 5.702 8 C 0.126 3.874 9 H 0.081 0.919 10 C 0.039 3.961 11 O -0.373 6.373 12 C 0.078 3.922 13 C 0.113 3.887 14 N -0.640 5.640 15 C -0.228 4.228 16 H 0.085 0.915 17 C -0.071 4.071 18 N -0.956 5.956 19 Si 0.982 3.018 20 H -0.282 1.282 21 H -0.268 1.268 22 H -0.295 1.295 23 C 0.153 3.847 24 C -0.124 4.124 25 C -0.034 4.034 26 C -0.165 4.165 27 C 0.087 3.913 28 N -0.521 5.521 29 C 0.087 3.913 30 C -0.176 4.176 31 H 0.049 0.951 32 H 0.059 0.941 33 H 0.068 0.932 34 H 0.125 0.875 35 H 0.117 0.883 36 H 0.422 0.578 37 H 0.074 0.926 38 H 0.084 0.916 39 H 0.049 0.951 40 H 0.072 0.928 41 H 0.248 0.752 42 H 0.042 0.958 43 H 0.018 0.982 44 H 0.122 0.878 45 H 0.099 0.901 46 H 0.157 0.843 47 H 0.174 0.826 48 H 0.170 0.830 49 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.965 -14.161 27.644 31.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.052 4.052 3 H 0.095 0.905 4 C -0.163 4.163 5 C 0.300 3.700 6 O -0.454 6.454 7 N -0.356 5.356 8 C 0.019 3.981 9 H 0.099 0.901 10 C -0.039 4.039 11 O -0.291 6.291 12 C 0.036 3.964 13 C -0.012 4.012 14 N -0.366 5.366 15 C -0.357 4.357 16 H 0.103 0.897 17 C -0.264 4.264 18 N -0.605 5.605 19 Si 0.809 3.191 20 H -0.208 1.208 21 H -0.192 1.192 22 H -0.222 1.222 23 C 0.027 3.973 24 C -0.163 4.163 25 C -0.043 4.043 26 C -0.184 4.184 27 C -0.069 4.069 28 N -0.231 5.231 29 C -0.069 4.069 30 C -0.195 4.195 31 H 0.069 0.931 32 H 0.078 0.922 33 H 0.087 0.913 34 H 0.143 0.857 35 H 0.135 0.865 36 H 0.260 0.740 37 H 0.092 0.908 38 H 0.102 0.898 39 H 0.068 0.932 40 H 0.090 0.910 41 H 0.057 0.943 42 H 0.059 0.941 43 H 0.037 0.963 44 H 0.140 0.860 45 H 0.118 0.882 46 H 0.175 0.825 47 H 0.191 0.809 48 H 0.187 0.813 49 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 4.534 -13.657 28.048 31.524 hybrid contribution -0.421 1.090 -1.846 2.184 sum 4.113 -12.567 26.202 29.350 Atomic orbital electron populations 1.21918 0.93766 1.02545 1.02226 1.19826 0.96512 0.98881 0.89963 0.90506 1.21753 1.04590 1.00600 0.89372 1.21248 0.78128 0.85277 0.85363 1.90720 1.41179 1.26449 1.87049 1.45719 1.57748 1.28056 1.04115 1.22327 0.93424 0.97048 0.85273 0.90111 1.23936 0.97980 1.01329 0.80611 1.88428 1.26293 1.91522 1.22876 1.23005 0.82699 0.97522 0.93139 1.22898 0.99192 0.91098 0.87995 1.45887 1.73584 1.04064 1.13063 1.19333 1.32420 0.93451 0.90448 0.89749 1.25709 1.02257 0.95815 1.02628 1.70033 1.49628 1.00067 1.40751 0.85014 0.78158 0.77062 0.78833 1.20830 1.19222 1.22162 1.22361 0.96053 0.94270 0.84629 1.23049 0.97934 1.05124 0.90190 1.20344 0.94315 0.94268 0.95327 1.22241 1.01592 0.95021 0.99553 1.23174 0.92696 1.00904 0.90115 1.67688 1.13634 1.10108 1.31653 1.23078 0.97131 0.90257 0.96424 1.22311 0.99383 1.02244 0.95591 0.93135 0.92214 0.91275 0.85668 0.86505 0.73990 0.90767 0.89819 0.93235 0.91005 0.94300 0.94087 0.96293 0.85992 0.88227 0.82536 0.80914 0.81318 0.83670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 8.75 71.98 0.63 -1.50 16 2 C -0.03 -0.40 2.24 -11.54 -0.03 -0.43 16 3 H 0.08 1.19 7.76 -2.39 -0.02 1.17 16 4 C -0.12 -1.09 4.93 29.85 0.15 -0.94 16 5 C 0.51 8.65 7.55 87.66 0.66 9.32 16 6 O -0.57 -15.31 13.72 -3.03 -0.04 -15.36 16 7 N -0.70 -10.19 5.24 -435.23 -2.28 -12.48 16 8 C 0.13 2.93 3.37 46.54 0.16 3.09 16 9 H 0.08 2.35 7.74 -2.39 -0.02 2.33 16 10 C 0.04 1.09 7.49 72.67 0.54 1.64 16 11 O -0.37 -14.79 11.18 -148.98 -1.67 -16.46 16 12 C 0.08 2.85 1.75 -10.68 -0.02 2.84 16 13 C 0.11 4.51 8.20 83.38 0.68 5.20 16 14 N -0.64 -34.41 3.77 -739.06 -2.79 -37.19 16 15 C -0.23 -13.46 10.73 84.04 0.90 -12.55 16 16 H 0.08 4.73 7.84 -2.91 -0.02 4.71 16 17 C -0.07 -4.26 5.50 84.86 0.47 -3.79 16 18 N -0.96 -60.45 11.82 21.65 0.26 -60.19 16 19 Si 0.98 47.53 29.56 68.60 2.03 49.56 16 20 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 21 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 22 H -0.29 -14.40 7.11 99.48 0.71 -13.69 16 23 C 0.15 7.50 6.70 83.47 0.56 8.06 16 24 C -0.12 -2.87 6.03 31.67 0.19 -2.68 16 25 C -0.03 -0.39 4.80 -19.67 -0.09 -0.48 16 26 C -0.16 -1.54 8.89 22.36 0.20 -1.34 16 27 C 0.09 1.02 11.18 84.68 0.95 1.97 16 28 N -0.52 -8.37 10.36 -195.84 -2.03 -10.40 16 29 C 0.09 1.15 11.18 84.68 0.95 2.09 16 30 C -0.18 -2.07 9.76 22.36 0.22 -1.86 16 31 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.06 1.20 5.95 -2.39 -0.01 1.19 16 33 H 0.07 0.74 7.46 -2.39 -0.02 0.72 16 34 H 0.13 0.45 7.68 -2.39 -0.02 0.44 16 35 H 0.12 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.42 2.86 8.51 -92.71 -0.79 2.07 16 37 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 38 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 39 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 40 H 0.07 2.47 8.13 -2.39 -0.02 2.45 16 41 H 0.25 15.18 8.31 -92.71 -0.77 14.41 16 42 H 0.04 1.97 7.95 -2.38 -0.02 1.95 16 43 H 0.02 1.08 7.60 -2.38 -0.02 1.06 16 44 H 0.12 1.87 7.96 -2.39 -0.02 1.85 16 45 H 0.10 2.21 7.81 -2.39 -0.02 2.19 16 46 H 0.16 0.68 7.35 -2.91 -0.02 0.66 16 47 H 0.17 1.15 8.06 -2.91 -0.02 1.13 16 48 H 0.17 1.46 8.06 -2.91 -0.02 1.44 16 49 H 0.15 1.30 8.01 -2.91 -0.02 1.28 16 Total: -1.00 -83.98 398.90 0.76 -83.22 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: 0.17 Total: 10.67 kcal Atomic # 6 Polarization: 1.51 SS G_CDS: 7.11 Total: 8.62 kcal Atomic # 7 Polarization: -113.42 SS G_CDS: -6.84 Total: -120.26 kcal Atomic # 8 Polarization: -30.11 SS G_CDS: -1.71 Total: -31.81 kcal Atomic # 14 Polarization: 47.53 SS G_CDS: 2.03 Total: 49.56 kcal Total: -83.98 0.76 -83.22 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700213458.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.841 kcal (2) G-P(sol) polarization free energy of solvation -83.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds