Wall clock time and date at job start Wed Apr 1 2020 04:51:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.53002 * 109.47233 * 120.00174 * 2 1 3 5 5 C 1.50703 * 109.46970 * 294.99898 * 4 2 1 6 6 N 1.34777 * 120.00049 * 180.02562 * 5 4 2 7 7 O 1.21282 * 119.99998 * 359.97438 * 5 4 2 8 8 C 1.50703 * 109.46912 * 239.99922 * 2 1 3 9 9 O 1.21278 * 119.99818 * 240.00149 * 8 2 1 10 10 N 1.34777 * 119.99991 * 60.00288 * 8 2 1 11 11 C 1.46499 * 119.99824 * 180.02562 * 10 8 2 12 12 H 1.08994 * 110.64302 * 31.85740 * 11 10 8 13 13 C 1.54328 * 110.71817 * 268.51911 * 11 10 8 14 14 N 1.47020 * 107.27163 * 219.44190 * 13 11 10 15 15 C 1.36936 * 125.65109 * 178.90556 * 14 13 11 16 16 H 1.08000 * 120.00410 * 180.02562 * 15 14 13 17 17 C 1.38814 * 119.99889 * 0.03977 * 15 14 13 18 18 N 1.31627 * 119.99616 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00311 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.46733 * 60.00472 * 19 17 15 21 21 H 1.48500 * 109.47174 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.46982 * 300.00835 * 19 17 15 23 23 C 1.47424 * 108.70293 * 358.94454 * 14 13 11 24 24 C 1.54909 * 104.83535 * 24.12395 * 23 14 13 25 25 H 1.09003 * 111.00169 * 81.06496 * 24 23 14 26 26 C 1.50697 * 111.04106 * 204.90457 * 24 23 14 27 27 C 1.38229 * 120.00160 * 51.93751 * 26 24 23 28 28 C 1.38236 * 120.00177 * 179.78980 * 27 26 24 29 29 C 1.38227 * 119.99667 * 0.46433 * 28 27 26 30 30 C 1.38235 * 120.00538 * 359.76971 * 29 28 27 31 31 C 1.38232 * 119.99686 * 0.02562 * 30 29 28 32 32 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 34 34 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 35 35 H 1.09000 * 109.47059 * 54.99596 * 4 2 1 36 36 H 1.08996 * 109.47073 * 174.99688 * 4 2 1 37 37 H 0.96988 * 119.99885 * 359.97438 * 6 5 4 38 38 H 0.97003 * 119.99773 * 179.97438 * 6 5 4 39 39 H 0.96998 * 120.00094 * 359.97438 * 10 8 2 40 40 H 1.08990 * 109.88142 * 338.86149 * 13 11 10 41 41 H 1.08998 * 109.88211 * 100.02946 * 13 11 10 42 42 H 0.96997 * 119.99518 * 179.97438 * 18 17 15 43 43 H 1.09007 * 110.36727 * 265.28612 * 23 14 13 44 44 H 1.08998 * 110.36780 * 142.96513 * 23 14 13 45 45 H 1.08005 * 119.99972 * 0.02562 * 27 26 24 46 46 H 1.07998 * 119.99874 * 180.25290 * 28 27 26 47 47 H 1.08009 * 119.99917 * 179.79180 * 29 28 27 48 48 H 1.08000 * 120.00238 * 179.97438 * 30 29 28 49 49 H 1.08001 * 120.00469 * 179.97438 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6414 0.0570 2.4766 6 7 1.9854 -0.3914 3.7001 7 8 1.0118 1.0874 2.3633 8 6 2.0323 -0.7104 -1.2305 9 8 2.7295 -1.6965 -1.1192 10 7 1.7067 -0.2500 -2.4546 11 6 2.1946 -0.9409 -3.6507 12 1 2.2910 -2.0105 -3.4642 13 6 3.5374 -0.3410 -4.1183 14 7 3.5074 -0.2962 -5.5875 15 6 4.5035 0.1899 -6.3917 16 1 4.3848 0.1789 -7.4651 17 6 5.6660 0.6966 -5.8272 18 7 5.8111 0.7093 -4.5190 19 14 7.0252 1.3592 -6.9241 20 1 6.5004 2.4859 -7.7366 21 1 8.1514 1.8376 -6.0826 22 1 7.5044 0.2803 -7.8249 23 6 2.2270 -0.8606 -6.0517 24 6 1.2567 -0.6768 -4.8582 25 1 0.8599 0.3381 -4.8300 26 6 0.1411 -1.6887 -4.9071 27 6 0.4330 -3.0338 -5.0346 28 6 -0.5902 -3.9624 -5.0751 29 6 -1.9057 -3.5450 -4.9978 30 6 -2.1979 -2.1994 -4.8752 31 6 -1.1746 -1.2712 -4.8305 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3633 0.5139 0.8900 34 1 -0.3634 0.5139 -0.8900 35 1 1.6054 -1.7198 1.2951 36 1 3.1263 -0.7995 1.2055 37 1 2.4892 -1.2152 3.7907 38 1 1.7291 0.1098 4.4901 39 1 1.1488 0.5385 -2.5436 40 1 3.6522 0.6666 -3.7190 41 1 4.3614 -0.9709 -3.7834 42 1 6.6236 1.0631 -4.1246 43 1 2.3420 -1.9186 -6.2876 44 1 1.8650 -0.3141 -6.9225 45 1 1.4608 -3.3596 -5.0987 46 1 -0.3619 -5.0136 -5.1705 47 1 -2.7053 -4.2702 -5.0328 48 1 -3.2258 -1.8733 -4.8153 49 1 -1.4028 -0.2199 -4.7351 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001707097394.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:31 Heat of formation + Delta-G solvation = -33.195025 kcal Electronic energy + Delta-G solvation = -30767.508086 eV Core-core repulsion = 26694.533340 eV Total energy + Delta-G solvation = -4072.974746 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.25019 -39.60403 -38.82776 -37.13681 -34.12755 -33.87180 -33.80995 -32.63380 -30.96123 -30.70964 -28.51071 -27.67943 -26.96885 -24.77685 -23.78552 -22.64975 -21.90346 -20.92462 -20.08901 -19.86644 -19.31365 -17.64519 -17.34121 -16.97566 -16.67248 -15.95700 -15.75228 -15.62437 -15.13176 -14.76916 -14.71771 -14.34891 -14.01588 -13.78674 -13.59302 -13.21749 -13.15271 -12.82783 -12.74658 -12.63794 -12.40585 -12.10699 -12.01896 -11.94906 -11.30214 -11.24831 -11.12377 -11.07486 -11.02082 -10.89546 -10.75015 -10.41187 -10.10361 -10.04603 -9.96449 -9.86923 -9.75890 -9.35790 -8.77760 -8.69629 -8.61862 -8.25925 -6.85842 -5.70617 -3.06090 1.51715 1.55577 2.49425 3.01710 3.21069 3.41032 3.45255 3.46781 3.70819 3.93304 4.48673 4.54997 4.86165 4.90895 4.94947 5.00623 5.09706 5.11668 5.26558 5.30210 5.43039 5.48317 5.55596 5.59260 5.64035 5.67260 5.73263 5.76601 5.81439 5.87018 6.04723 6.15570 6.16947 6.21811 6.24405 6.33000 6.55589 6.57879 6.60163 6.66405 6.73370 6.79658 6.97369 7.10931 7.16543 7.54335 7.56680 7.82883 7.92869 8.08828 8.23485 8.61135 9.19944 9.80278 10.44408 11.39874 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.006775 B = 0.004127 C = 0.002738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4131.940295 B = 6783.715663 C =10224.191099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.095 4.095 3 H 0.105 0.895 4 C -0.124 4.124 5 C 0.519 3.481 6 N -0.859 5.859 7 O -0.542 6.542 8 C 0.519 3.481 9 O -0.544 6.544 10 N -0.709 5.709 11 C 0.128 3.872 12 H 0.091 0.909 13 C 0.173 3.827 14 N -0.604 5.604 15 C -0.232 4.232 16 H 0.079 0.921 17 C -0.005 4.005 18 N -0.919 5.919 19 Si 0.912 3.088 20 H -0.285 1.285 21 H -0.290 1.290 22 H -0.285 1.285 23 C 0.147 3.853 24 C -0.076 4.076 25 H 0.086 0.914 26 C -0.056 4.056 27 C -0.111 4.111 28 C -0.119 4.119 29 C -0.133 4.133 30 C -0.122 4.122 31 C -0.118 4.118 32 H 0.053 0.947 33 H 0.082 0.918 34 H 0.059 0.941 35 H 0.100 0.900 36 H 0.105 0.895 37 H 0.402 0.598 38 H 0.399 0.601 39 H 0.396 0.604 40 H 0.052 0.948 41 H 0.050 0.950 42 H 0.253 0.747 43 H 0.026 0.974 44 H 0.044 0.956 45 H 0.124 0.876 46 H 0.118 0.882 47 H 0.115 0.885 48 H 0.116 0.884 49 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.621 -5.559 10.498 18.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.117 4.117 3 H 0.123 0.877 4 C -0.165 4.165 5 C 0.305 3.695 6 N -0.422 5.422 7 O -0.419 6.419 8 C 0.305 3.695 9 O -0.421 6.421 10 N -0.359 5.359 11 C 0.023 3.977 12 H 0.109 0.891 13 C 0.047 3.953 14 N -0.330 5.330 15 C -0.360 4.360 16 H 0.097 0.903 17 C -0.202 4.202 18 N -0.566 5.566 19 Si 0.743 3.257 20 H -0.212 1.212 21 H -0.216 1.216 22 H -0.211 1.211 23 C 0.020 3.980 24 C -0.096 4.096 25 H 0.104 0.896 26 C -0.056 4.056 27 C -0.129 4.129 28 C -0.137 4.137 29 C -0.151 4.151 30 C -0.140 4.140 31 C -0.137 4.137 32 H 0.073 0.927 33 H 0.101 0.899 34 H 0.078 0.922 35 H 0.119 0.881 36 H 0.124 0.876 37 H 0.231 0.769 38 H 0.230 0.770 39 H 0.230 0.770 40 H 0.070 0.930 41 H 0.068 0.932 42 H 0.064 0.936 43 H 0.044 0.956 44 H 0.063 0.937 45 H 0.142 0.858 46 H 0.136 0.864 47 H 0.133 0.867 48 H 0.134 0.866 49 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -14.272 -5.534 10.318 18.460 hybrid contribution 0.705 0.526 -0.177 0.898 sum -13.567 -5.008 10.140 17.662 Atomic orbital electron populations 1.21884 0.92620 1.02213 1.03732 1.20995 0.97990 1.01113 0.91574 0.87718 1.21456 1.04228 0.99917 0.90853 1.20764 0.78134 0.85296 0.85307 1.43897 1.60360 1.29658 1.08288 1.90710 1.39844 1.24623 1.86763 1.20403 0.79950 0.84536 0.84613 1.90686 1.37910 1.26710 1.86806 1.45856 1.52975 1.31521 1.05515 1.22513 0.95503 0.97500 0.82171 0.89123 1.21516 0.90555 0.99679 0.83556 1.44396 1.14556 1.72258 1.01825 1.18999 0.94080 1.33650 0.89297 0.90329 1.24815 0.98191 1.01262 0.95940 1.69956 1.27277 1.50997 1.08350 0.86199 0.81541 0.78771 0.79232 1.21158 1.21606 1.21132 1.21604 0.85825 0.96908 0.93665 1.21690 0.93148 0.97253 0.97521 0.89570 1.19807 0.93979 0.94191 0.97659 1.21119 0.99623 0.92707 0.99431 1.21106 0.92863 0.99341 1.00360 1.21053 0.96420 0.95833 1.01797 1.21050 0.98769 0.93336 1.00863 1.21030 0.92189 0.99402 1.01030 0.92746 0.89923 0.92184 0.88142 0.87635 0.76926 0.77046 0.76961 0.92958 0.93214 0.93641 0.95627 0.93732 0.85759 0.86408 0.86678 0.86564 0.86363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 8.83 37.16 0.33 -1.33 16 2 C -0.09 -1.22 2.37 -91.77 -0.22 -1.43 16 3 H 0.10 1.38 7.95 -51.93 -0.41 0.97 16 4 C -0.12 -1.38 4.52 -27.88 -0.13 -1.50 16 5 C 0.52 5.58 7.82 -10.98 -0.09 5.49 16 6 N -0.86 -5.85 8.87 31.22 0.28 -5.57 16 7 O -0.54 -7.68 14.80 5.56 0.08 -7.59 16 8 C 0.52 8.46 7.15 -10.98 -0.08 8.38 16 9 O -0.54 -10.74 15.56 5.56 0.09 -10.65 16 10 N -0.71 -11.35 5.00 -52.03 -0.26 -11.61 16 11 C 0.13 2.41 2.74 -66.09 -0.18 2.22 16 12 H 0.09 1.83 6.63 -51.93 -0.34 1.48 16 13 C 0.17 4.18 5.12 -3.06 -0.02 4.17 16 14 N -0.60 -15.12 3.39 -170.08 -0.58 -15.70 16 15 C -0.23 -6.40 10.28 -15.06 -0.15 -6.56 16 16 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 17 C -0.01 -0.15 5.49 -17.43 -0.10 -0.25 16 18 N -0.92 -27.10 10.31 55.49 0.57 -26.53 16 19 Si 0.91 22.09 29.55 -169.99 -5.02 17.07 16 20 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 21 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 22 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 23 C 0.15 2.94 6.64 -2.53 -0.02 2.93 16 24 C -0.08 -1.27 2.89 -89.62 -0.26 -1.53 16 25 H 0.09 1.37 7.83 -51.93 -0.41 0.96 16 26 C -0.06 -0.82 5.00 -104.63 -0.52 -1.34 16 27 C -0.11 -1.62 8.31 -39.59 -0.33 -1.95 16 28 C -0.12 -1.50 10.05 -39.59 -0.40 -1.90 16 29 C -0.13 -1.53 10.05 -39.59 -0.40 -1.93 16 30 C -0.12 -1.41 10.05 -39.58 -0.40 -1.81 16 31 C -0.12 -1.52 9.69 -39.58 -0.38 -1.90 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.08 0.98 5.95 -51.93 -0.31 0.67 16 34 H 0.06 0.62 7.56 -51.93 -0.39 0.22 16 35 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 36 H 0.11 1.20 7.95 -51.93 -0.41 0.79 16 37 H 0.40 1.70 8.83 -40.82 -0.36 1.34 16 38 H 0.40 2.28 8.93 -40.82 -0.36 1.92 16 39 H 0.40 5.37 7.98 -40.82 -0.33 5.05 16 40 H 0.05 1.40 7.27 -51.93 -0.38 1.02 16 41 H 0.05 1.40 7.51 -51.93 -0.39 1.01 16 42 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 43 H 0.03 0.52 6.63 -51.93 -0.34 0.17 16 44 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 45 H 0.12 1.90 7.01 -52.48 -0.37 1.54 16 46 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 47 H 0.12 1.05 8.06 -52.48 -0.42 0.63 16 48 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 49 H 0.12 1.32 7.99 -52.49 -0.42 0.90 16 LS Contribution 396.55 15.07 5.98 5.98 Total: -1.00 -34.81 396.55 -9.51 -44.32 By element: Atomic # 1 Polarization: 17.83 SS G_CDS: -7.31 Total: 10.52 kcal Atomic # 6 Polarization: 3.10 SS G_CDS: -3.33 Total: -0.23 kcal Atomic # 7 Polarization: -59.42 SS G_CDS: 0.01 Total: -59.40 kcal Atomic # 8 Polarization: -18.42 SS G_CDS: 0.17 Total: -18.25 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -34.81 -9.51 -44.32 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707097394.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.125 kcal (2) G-P(sol) polarization free energy of solvation -34.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds