Wall clock time and date at job start Wed Apr 1 2020 04:51:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.53002 * 109.47233 * 120.00174 * 2 1 3 5 5 C 1.50703 * 109.46970 * 294.99898 * 4 2 1 6 6 N 1.34777 * 120.00049 * 180.02562 * 5 4 2 7 7 O 1.21282 * 119.99998 * 359.97438 * 5 4 2 8 8 C 1.50703 * 109.46912 * 239.99922 * 2 1 3 9 9 O 1.21278 * 119.99818 * 240.00149 * 8 2 1 10 10 N 1.34777 * 119.99991 * 60.00288 * 8 2 1 11 11 C 1.46499 * 119.99824 * 180.02562 * 10 8 2 12 12 H 1.08994 * 110.64302 * 31.85740 * 11 10 8 13 13 C 1.54328 * 110.71817 * 268.51911 * 11 10 8 14 14 N 1.47020 * 107.27163 * 219.44190 * 13 11 10 15 15 C 1.36936 * 125.65109 * 178.90556 * 14 13 11 16 16 H 1.08000 * 120.00410 * 180.02562 * 15 14 13 17 17 C 1.38814 * 119.99889 * 0.03977 * 15 14 13 18 18 N 1.31627 * 119.99616 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00311 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.46733 * 60.00472 * 19 17 15 21 21 H 1.48500 * 109.47174 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.46982 * 300.00835 * 19 17 15 23 23 C 1.47424 * 108.70293 * 358.94454 * 14 13 11 24 24 C 1.54909 * 104.83535 * 24.12395 * 23 14 13 25 25 H 1.09003 * 111.00169 * 81.06496 * 24 23 14 26 26 C 1.50697 * 111.04106 * 204.90457 * 24 23 14 27 27 C 1.38229 * 120.00160 * 51.93751 * 26 24 23 28 28 C 1.38236 * 120.00177 * 179.78980 * 27 26 24 29 29 C 1.38227 * 119.99667 * 0.46433 * 28 27 26 30 30 C 1.38235 * 120.00538 * 359.76971 * 29 28 27 31 31 C 1.38232 * 119.99686 * 0.02562 * 30 29 28 32 32 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 34 34 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 35 35 H 1.09000 * 109.47059 * 54.99596 * 4 2 1 36 36 H 1.08996 * 109.47073 * 174.99688 * 4 2 1 37 37 H 0.96988 * 119.99885 * 359.97438 * 6 5 4 38 38 H 0.97003 * 119.99773 * 179.97438 * 6 5 4 39 39 H 0.96998 * 120.00094 * 359.97438 * 10 8 2 40 40 H 1.08990 * 109.88142 * 338.86149 * 13 11 10 41 41 H 1.08998 * 109.88211 * 100.02946 * 13 11 10 42 42 H 0.96997 * 119.99518 * 179.97438 * 18 17 15 43 43 H 1.09007 * 110.36727 * 265.28612 * 23 14 13 44 44 H 1.08998 * 110.36780 * 142.96513 * 23 14 13 45 45 H 1.08005 * 119.99972 * 0.02562 * 27 26 24 46 46 H 1.07998 * 119.99874 * 180.25290 * 28 27 26 47 47 H 1.08009 * 119.99917 * 179.79180 * 29 28 27 48 48 H 1.08000 * 120.00238 * 179.97438 * 30 29 28 49 49 H 1.08001 * 120.00469 * 179.97438 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6414 0.0570 2.4766 6 7 1.9854 -0.3914 3.7001 7 8 1.0118 1.0874 2.3633 8 6 2.0323 -0.7104 -1.2305 9 8 2.7295 -1.6965 -1.1192 10 7 1.7067 -0.2500 -2.4546 11 6 2.1946 -0.9409 -3.6507 12 1 2.2910 -2.0105 -3.4642 13 6 3.5374 -0.3410 -4.1183 14 7 3.5074 -0.2962 -5.5875 15 6 4.5035 0.1899 -6.3917 16 1 4.3848 0.1789 -7.4651 17 6 5.6660 0.6966 -5.8272 18 7 5.8111 0.7093 -4.5190 19 14 7.0252 1.3592 -6.9241 20 1 6.5004 2.4859 -7.7366 21 1 8.1514 1.8376 -6.0826 22 1 7.5044 0.2803 -7.8249 23 6 2.2270 -0.8606 -6.0517 24 6 1.2567 -0.6768 -4.8582 25 1 0.8599 0.3381 -4.8300 26 6 0.1411 -1.6887 -4.9071 27 6 0.4330 -3.0338 -5.0346 28 6 -0.5902 -3.9624 -5.0751 29 6 -1.9057 -3.5450 -4.9978 30 6 -2.1979 -2.1994 -4.8752 31 6 -1.1746 -1.2712 -4.8305 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3633 0.5139 0.8900 34 1 -0.3634 0.5139 -0.8900 35 1 1.6054 -1.7198 1.2951 36 1 3.1263 -0.7995 1.2055 37 1 2.4892 -1.2152 3.7907 38 1 1.7291 0.1098 4.4901 39 1 1.1488 0.5385 -2.5436 40 1 3.6522 0.6666 -3.7190 41 1 4.3614 -0.9709 -3.7834 42 1 6.6236 1.0631 -4.1246 43 1 2.3420 -1.9186 -6.2876 44 1 1.8650 -0.3141 -6.9225 45 1 1.4608 -3.3596 -5.0987 46 1 -0.3619 -5.0136 -5.1705 47 1 -2.7053 -4.2702 -5.0328 48 1 -3.2258 -1.8733 -4.8153 49 1 -1.4028 -0.2199 -4.7351 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001707097394.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:29 Heat of formation + Delta-G solvation = -58.278811 kcal Electronic energy + Delta-G solvation = -30768.595801 eV Core-core repulsion = 26694.533340 eV Total energy + Delta-G solvation = -4074.062460 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.48271 -40.68449 -39.94539 -38.63185 -35.60057 -35.18774 -34.62404 -34.14238 -32.56412 -31.71491 -30.03307 -28.82397 -28.47056 -26.56051 -25.01213 -23.79639 -23.03151 -22.30003 -21.44486 -21.27747 -20.51391 -18.97124 -18.61821 -18.10368 -17.85262 -17.18762 -17.02444 -16.83479 -16.55110 -16.03742 -15.88133 -15.61047 -15.35289 -15.30636 -14.80831 -14.41441 -14.25017 -14.09871 -14.05948 -13.87905 -13.79162 -13.60446 -13.58176 -13.01212 -12.94637 -12.72151 -12.65004 -12.52550 -12.18878 -12.15999 -12.06668 -11.97596 -11.87364 -11.62665 -11.53032 -11.00451 -10.79041 -10.72381 -10.54779 -10.08151 -9.73358 -9.47082 -8.93932 -7.85241 -5.23538 0.50634 0.58564 1.44813 1.48523 1.54795 1.64388 1.67214 2.09252 2.48511 2.74271 2.91866 3.32734 3.50469 3.58596 3.76701 3.88660 3.94938 3.98570 4.02924 4.18759 4.23127 4.25593 4.31170 4.36724 4.42869 4.56614 4.58495 4.67831 4.72860 4.74645 4.82745 4.92043 4.97854 5.08740 5.15967 5.21046 5.24475 5.31081 5.33728 5.43407 5.60231 5.65854 5.69654 5.73343 5.85237 5.94796 6.14503 6.20329 6.45374 6.59156 7.05456 7.28650 7.36836 7.73376 8.37001 9.23538 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.006775 B = 0.004127 C = 0.002738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4131.940295 B = 6783.715663 C =10224.191099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.088 4.088 3 H 0.101 0.899 4 C -0.123 4.123 5 C 0.522 3.478 6 N -0.838 5.838 7 O -0.579 6.579 8 C 0.517 3.483 9 O -0.582 6.582 10 N -0.701 5.701 11 C 0.147 3.853 12 H 0.075 0.925 13 C 0.189 3.811 14 N -0.624 5.624 15 C -0.245 4.245 16 H 0.087 0.913 17 C -0.065 4.065 18 N -0.951 5.951 19 Si 0.980 3.020 20 H -0.273 1.273 21 H -0.296 1.296 22 H -0.277 1.277 23 C 0.141 3.859 24 C -0.052 4.052 25 H 0.100 0.900 26 C -0.073 4.073 27 C -0.131 4.131 28 C -0.126 4.126 29 C -0.127 4.127 30 C -0.119 4.119 31 C -0.118 4.118 32 H 0.059 0.941 33 H 0.081 0.919 34 H 0.070 0.930 35 H 0.112 0.888 36 H 0.099 0.901 37 H 0.417 0.583 38 H 0.409 0.591 39 H 0.411 0.589 40 H 0.021 0.979 41 H -0.005 1.005 42 H 0.245 0.755 43 H 0.026 0.974 44 H 0.053 0.947 45 H 0.103 0.897 46 H 0.134 0.866 47 H 0.145 0.855 48 H 0.148 0.852 49 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.691 -5.769 10.489 21.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.109 4.109 3 H 0.119 0.881 4 C -0.163 4.163 5 C 0.308 3.692 6 N -0.402 5.402 7 O -0.459 6.459 8 C 0.304 3.696 9 O -0.462 6.462 10 N -0.352 5.352 11 C 0.041 3.959 12 H 0.093 0.907 13 C 0.063 3.937 14 N -0.350 5.350 15 C -0.373 4.373 16 H 0.105 0.895 17 C -0.258 4.258 18 N -0.600 5.600 19 Si 0.808 3.192 20 H -0.198 1.198 21 H -0.223 1.223 22 H -0.203 1.203 23 C 0.016 3.984 24 C -0.072 4.072 25 H 0.118 0.882 26 C -0.074 4.074 27 C -0.149 4.149 28 C -0.144 4.144 29 C -0.145 4.145 30 C -0.137 4.137 31 C -0.136 4.136 32 H 0.078 0.922 33 H 0.099 0.901 34 H 0.089 0.911 35 H 0.130 0.870 36 H 0.117 0.883 37 H 0.248 0.752 38 H 0.240 0.760 39 H 0.248 0.752 40 H 0.039 0.961 41 H 0.013 0.987 42 H 0.055 0.945 43 H 0.044 0.956 44 H 0.071 0.929 45 H 0.121 0.879 46 H 0.151 0.849 47 H 0.163 0.837 48 H 0.166 0.834 49 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -17.381 -5.764 10.318 21.019 hybrid contribution 1.629 0.477 -0.178 1.706 sum -15.753 -5.288 10.140 19.466 Atomic orbital electron populations 1.21826 0.90847 1.02681 1.04207 1.20970 0.99321 1.00366 0.90272 0.88059 1.21428 1.03879 1.00432 0.90554 1.20600 0.77863 0.84695 0.86065 1.43699 1.59149 1.29942 1.07364 1.90699 1.41793 1.26080 1.87322 1.21100 0.78991 0.84039 0.85443 1.90668 1.39551 1.28594 1.87353 1.45741 1.52803 1.31849 1.04765 1.21988 0.93547 0.96241 0.84126 0.90734 1.21131 0.92067 0.96965 0.83548 1.44667 1.16031 1.72213 1.02095 1.19455 0.94887 1.32866 0.90131 0.89500 1.25686 1.00666 1.02189 0.97222 1.70214 1.27379 1.52249 1.10148 0.85138 0.78288 0.78394 0.77428 1.19849 1.22276 1.20340 1.21780 0.84637 0.96506 0.95459 1.21445 0.92758 0.98887 0.94092 0.88213 1.19590 0.94114 0.93424 1.00242 1.21102 0.99378 0.93461 1.00984 1.21336 0.93101 0.99840 1.00082 1.21457 0.96483 0.96731 0.99831 1.21440 0.99944 0.93037 0.99276 1.21255 0.91320 1.00868 1.00157 0.92217 0.90055 0.91062 0.86962 0.88265 0.75216 0.75958 0.75242 0.96081 0.98719 0.94549 0.95584 0.92884 0.87880 0.84856 0.83688 0.83422 0.84463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.89 8.83 71.98 0.64 -2.26 16 2 C -0.09 -2.22 2.37 -11.54 -0.03 -2.25 16 3 H 0.10 2.68 7.95 -2.39 -0.02 2.66 16 4 C -0.12 -2.67 4.52 29.85 0.13 -2.53 16 5 C 0.52 10.68 7.82 87.66 0.69 11.37 16 6 N -0.84 -10.01 8.87 -173.53 -1.54 -11.55 16 7 O -0.58 -15.90 14.80 -3.04 -0.04 -15.95 16 8 C 0.52 17.21 7.15 87.66 0.63 17.83 16 9 O -0.58 -23.95 15.56 -3.02 -0.05 -24.00 16 10 N -0.70 -22.85 5.00 -436.92 -2.18 -25.03 16 11 C 0.15 5.76 2.74 46.18 0.13 5.89 16 12 H 0.07 3.19 6.63 -2.39 -0.02 3.18 16 13 C 0.19 9.79 5.12 86.73 0.44 10.23 16 14 N -0.62 -32.56 3.39 -692.00 -2.35 -34.91 16 15 C -0.24 -13.89 10.28 84.03 0.86 -13.02 16 16 H 0.09 4.65 7.83 -2.91 -0.02 4.63 16 17 C -0.06 -3.75 5.49 84.86 0.47 -3.29 16 18 N -0.95 -59.09 10.31 21.65 0.22 -58.87 16 19 Si 0.98 46.52 29.55 68.60 2.03 48.54 16 20 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 21 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 22 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 23 C 0.14 5.79 6.64 86.86 0.58 6.36 16 24 C -0.05 -1.74 2.89 -10.15 -0.03 -1.77 16 25 H 0.10 3.04 7.83 -2.39 -0.02 3.02 16 26 C -0.07 -2.06 5.00 -19.87 -0.10 -2.16 16 27 C -0.13 -3.79 8.31 22.27 0.19 -3.60 16 28 C -0.13 -2.92 10.05 22.27 0.22 -2.70 16 29 C -0.13 -2.44 10.05 22.27 0.22 -2.22 16 30 C -0.12 -2.24 10.05 22.27 0.22 -2.02 16 31 C -0.12 -2.65 9.69 22.27 0.22 -2.43 16 32 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.08 1.80 5.95 -2.39 -0.01 1.79 16 34 H 0.07 1.31 7.56 -2.39 -0.02 1.29 16 35 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 36 H 0.10 2.29 7.95 -2.39 -0.02 2.27 16 37 H 0.42 2.75 8.83 -92.72 -0.82 1.93 16 38 H 0.41 3.91 8.93 -92.71 -0.83 3.08 16 39 H 0.41 10.91 7.98 -92.71 -0.74 10.17 16 40 H 0.02 1.20 7.27 -2.39 -0.02 1.18 16 41 H -0.01 -0.34 7.51 -2.39 -0.02 -0.35 16 42 H 0.25 14.94 8.31 -92.71 -0.77 14.17 16 43 H 0.03 1.08 6.63 -2.38 -0.02 1.06 16 44 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 45 H 0.10 3.33 7.01 -2.91 -0.02 3.31 16 46 H 0.13 2.58 8.06 -2.91 -0.02 2.56 16 47 H 0.15 1.92 8.06 -2.91 -0.02 1.90 16 48 H 0.15 1.88 8.06 -2.91 -0.02 1.86 16 49 H 0.14 2.52 7.99 -2.91 -0.02 2.49 16 Total: -1.00 -80.10 396.55 0.18 -79.92 By element: Atomic # 1 Polarization: 31.79 SS G_CDS: -1.39 Total: 30.40 kcal Atomic # 6 Polarization: 5.96 SS G_CDS: 5.48 Total: 11.44 kcal Atomic # 7 Polarization: -124.51 SS G_CDS: -5.85 Total: -130.35 kcal Atomic # 8 Polarization: -39.86 SS G_CDS: -0.09 Total: -39.95 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 2.03 Total: 48.54 kcal Total: -80.10 0.18 -79.92 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707097394.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.645 kcal (2) G-P(sol) polarization free energy of solvation -80.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds