Wall clock time and date at job start Wed Apr 1 2020 04:51:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.47110 * 2 1 4 4 C 1.52997 * 109.47085 * 239.99940 * 2 1 3 5 5 C 1.50706 * 109.47238 * 64.99687 * 4 2 1 6 6 N 1.34774 * 120.00020 * 180.02562 * 5 4 2 7 7 O 1.21279 * 119.99507 * 0.02562 * 5 4 2 8 8 C 1.50701 * 109.47421 * 119.99915 * 2 1 3 9 9 O 1.21280 * 119.99974 * 119.99803 * 8 2 1 10 10 N 1.34771 * 119.99782 * 300.00093 * 8 2 1 11 11 C 1.46503 * 120.00040 * 179.97438 * 10 8 2 12 12 H 1.08999 * 110.64147 * 31.85654 * 11 10 8 13 13 C 1.54328 * 110.71809 * 268.52181 * 11 10 8 14 14 N 1.47025 * 107.26852 * 219.43962 * 13 11 10 15 15 C 1.36936 * 125.64554 * 178.90583 * 14 13 11 16 16 H 1.08004 * 119.99721 * 180.02562 * 15 14 13 17 17 C 1.38812 * 120.00324 * 0.04374 * 15 14 13 18 18 N 1.31618 * 119.99657 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00255 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47229 * 59.99620 * 19 17 15 21 21 H 1.48500 * 109.47249 * 180.02562 * 19 17 15 22 22 H 1.48507 * 109.46899 * 300.00168 * 19 17 15 23 23 C 1.47425 * 108.70424 * 358.94524 * 14 13 11 24 24 C 1.54910 * 104.83404 * 24.12456 * 23 14 13 25 25 H 1.08999 * 111.00221 * 81.06786 * 24 23 14 26 26 C 1.50699 * 111.03861 * 204.90675 * 24 23 14 27 27 C 1.38230 * 120.00221 * 51.93802 * 26 24 23 28 28 C 1.38234 * 120.00184 * 179.78893 * 27 26 24 29 29 C 1.38240 * 119.99895 * 0.46838 * 28 27 26 30 30 C 1.38241 * 119.99872 * 359.76451 * 29 28 27 31 31 C 1.38234 * 119.99771 * 232.21944 * 26 24 23 32 32 H 1.08993 * 109.46967 * 59.99924 * 1 2 3 33 33 H 1.08997 * 109.46762 * 180.02562 * 1 2 3 34 34 H 1.09004 * 109.46776 * 299.99721 * 1 2 3 35 35 H 1.09001 * 109.46832 * 305.00000 * 4 2 1 36 36 H 1.09000 * 109.47611 * 185.00297 * 4 2 1 37 37 H 0.96994 * 119.99756 * 0.02562 * 6 5 4 38 38 H 0.97000 * 119.99529 * 180.02562 * 6 5 4 39 39 H 0.97002 * 120.00454 * 359.97438 * 10 8 2 40 40 H 1.08996 * 109.88649 * 338.85739 * 13 11 10 41 41 H 1.09007 * 109.87999 * 100.02736 * 13 11 10 42 42 H 0.97006 * 119.99962 * 179.97438 * 18 17 15 43 43 H 1.09005 * 110.36355 * 265.29095 * 23 14 13 44 44 H 1.08999 * 110.36890 * 142.96744 * 23 14 13 45 45 H 1.08007 * 120.00181 * 0.02562 * 27 26 24 46 46 H 1.08000 * 120.00439 * 180.24967 * 28 27 26 47 47 H 1.07997 * 120.00109 * 179.79053 * 29 28 27 48 48 H 1.07999 * 120.00194 * 179.97438 * 30 29 28 49 49 H 1.08007 * 120.00250 * 359.97380 * 31 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6413 0.0570 -2.4766 6 7 1.9844 -0.3920 -3.7002 7 8 1.0116 1.0873 -2.3632 8 6 2.0325 -0.7104 1.2305 9 8 2.7297 -1.6965 1.1192 10 7 1.7069 -0.2499 2.4545 11 6 2.1948 -0.9408 3.6507 12 1 3.1707 -1.3890 3.4644 13 6 1.1806 -2.0061 4.1178 14 7 1.1480 -1.9632 5.5870 15 6 0.3567 -2.7397 6.3907 16 1 0.4065 -2.6317 7.4642 17 6 -0.5091 -3.6661 5.8259 18 7 -0.5698 -3.7977 4.5177 19 14 -1.5879 -4.7260 6.9223 20 1 -2.4747 -3.8551 7.7349 21 1 -2.4148 -5.6276 6.0805 22 1 -0.7313 -5.5383 7.8232 23 6 2.1075 -0.9449 6.0517 24 6 2.2588 0.0313 4.8584 25 1 1.4348 0.7443 4.8301 26 6 3.5853 0.7447 4.9078 27 6 4.7555 0.0201 5.0354 28 6 5.9726 0.6742 5.0763 29 6 6.0187 2.0537 4.9994 30 6 4.8481 2.7787 4.8766 31 6 3.6314 2.1241 4.8314 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 -0.3633 0.5138 0.8901 35 1 1.6054 -1.7198 -1.2951 36 1 3.1263 -0.7996 -1.2056 37 1 2.4876 -1.2162 -3.7908 38 1 1.7280 0.1092 -4.4901 39 1 1.1495 0.5390 2.5436 40 1 0.1925 -1.7777 3.7183 41 1 1.4992 -2.9933 3.7828 42 1 -1.1745 -4.4454 4.1229 43 1 3.0662 -1.4069 6.2877 44 1 1.7131 -0.4213 6.9225 45 1 4.7192 -1.0575 5.0993 46 1 6.8871 0.1078 5.1720 47 1 6.9694 2.5650 5.0348 48 1 4.8841 3.8564 4.8169 49 1 2.7168 2.6906 4.7358 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001707097395.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:33 Heat of formation + Delta-G solvation = -58.086374 kcal Electronic energy + Delta-G solvation = -30748.446820 eV Core-core repulsion = 26674.392705 eV Total energy + Delta-G solvation = -4074.054116 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.48233 -40.68430 -39.94558 -38.63008 -35.59741 -35.19462 -34.61713 -34.14040 -32.56415 -31.72224 -30.02625 -28.81946 -28.50776 -26.54562 -25.01674 -23.80122 -23.03658 -22.31969 -21.43853 -21.28049 -20.49014 -18.94782 -18.67245 -18.09670 -17.83749 -17.18447 -17.04542 -16.74083 -16.57782 -16.05170 -15.86051 -15.68764 -15.40265 -15.16570 -14.89914 -14.37195 -14.25702 -14.11555 -14.04346 -13.87628 -13.79641 -13.65211 -13.56694 -13.01613 -12.97064 -12.72009 -12.64255 -12.52861 -12.19929 -12.15290 -12.09414 -11.97475 -11.86825 -11.62985 -11.53154 -10.99862 -10.78369 -10.72033 -10.54384 -10.08121 -9.74214 -9.47816 -8.93262 -7.84533 -5.22774 0.49812 0.57687 1.45195 1.48763 1.55010 1.64466 1.66600 2.10320 2.48841 2.74501 2.91084 3.33306 3.50385 3.58370 3.75931 3.89359 3.96844 3.98554 3.99432 4.18301 4.22435 4.25387 4.30616 4.36043 4.42738 4.56700 4.58173 4.66842 4.72032 4.73071 4.82335 4.92001 4.95157 5.07495 5.15505 5.20601 5.23714 5.29340 5.32830 5.43936 5.60735 5.65042 5.68786 5.73716 5.84822 5.95264 6.15010 6.19627 6.45785 6.59201 7.06135 7.28683 7.37251 7.73920 8.37608 9.24113 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.006712 B = 0.004148 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4170.422842 B = 6748.910651 C =10190.516153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.082 4.082 3 H 0.117 0.883 4 C -0.123 4.123 5 C 0.523 3.477 6 N -0.838 5.838 7 O -0.578 6.578 8 C 0.516 3.484 9 O -0.582 6.582 10 N -0.701 5.701 11 C 0.147 3.853 12 H 0.074 0.926 13 C 0.191 3.809 14 N -0.624 5.624 15 C -0.245 4.245 16 H 0.087 0.913 17 C -0.064 4.064 18 N -0.950 5.950 19 Si 0.979 3.021 20 H -0.273 1.273 21 H -0.296 1.296 22 H -0.278 1.278 23 C 0.142 3.858 24 C -0.052 4.052 25 H 0.100 0.900 26 C -0.074 4.074 27 C -0.131 4.131 28 C -0.126 4.126 29 C -0.127 4.127 30 C -0.120 4.120 31 C -0.119 4.119 32 H 0.085 0.915 33 H 0.044 0.956 34 H 0.066 0.934 35 H 0.101 0.899 36 H 0.110 0.890 37 H 0.417 0.583 38 H 0.409 0.591 39 H 0.411 0.589 40 H 0.023 0.977 41 H -0.006 1.006 42 H 0.245 0.755 43 H 0.026 0.974 44 H 0.053 0.947 45 H 0.104 0.896 46 H 0.134 0.866 47 H 0.146 0.854 48 H 0.148 0.852 49 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.376 14.045 -10.559 20.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.104 4.104 3 H 0.135 0.865 4 C -0.164 4.164 5 C 0.309 3.691 6 N -0.402 5.402 7 O -0.458 6.458 8 C 0.304 3.696 9 O -0.462 6.462 10 N -0.352 5.352 11 C 0.040 3.960 12 H 0.092 0.908 13 C 0.064 3.936 14 N -0.350 5.350 15 C -0.374 4.374 16 H 0.104 0.896 17 C -0.257 4.257 18 N -0.598 5.598 19 Si 0.807 3.193 20 H -0.199 1.199 21 H -0.223 1.223 22 H -0.204 1.204 23 C 0.016 3.984 24 C -0.072 4.072 25 H 0.118 0.882 26 C -0.074 4.074 27 C -0.149 4.149 28 C -0.144 4.144 29 C -0.145 4.145 30 C -0.138 4.138 31 C -0.137 4.137 32 H 0.103 0.897 33 H 0.063 0.937 34 H 0.085 0.915 35 H 0.119 0.881 36 H 0.128 0.872 37 H 0.248 0.752 38 H 0.241 0.759 39 H 0.248 0.752 40 H 0.041 0.959 41 H 0.012 0.988 42 H 0.055 0.945 43 H 0.044 0.956 44 H 0.071 0.929 45 H 0.122 0.878 46 H 0.152 0.848 47 H 0.163 0.837 48 H 0.166 0.834 49 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 10.329 13.798 -10.388 20.124 hybrid contribution -0.903 -1.306 0.206 1.601 sum 9.425 12.492 -10.183 18.670 Atomic orbital electron populations 1.21850 0.92143 1.02017 1.04096 1.20940 0.98230 1.00971 0.90244 0.86531 1.21433 1.04275 1.00051 0.90596 1.20576 0.77858 0.84679 0.86035 1.43701 1.59221 1.29877 1.07367 1.90696 1.41596 1.26199 1.87320 1.21118 0.79123 0.83944 0.85462 1.90669 1.40221 1.27907 1.87355 1.45744 1.53085 1.31565 1.04773 1.21998 0.97025 0.92837 0.84113 0.90769 1.21124 0.95148 0.93825 0.83494 1.44667 1.45493 1.42720 1.02122 1.19444 1.14531 1.13281 0.90113 0.89560 1.25669 1.01602 1.01193 0.97219 1.70208 1.41084 1.38474 1.10075 0.85150 0.78400 0.78316 0.77448 1.19880 1.22251 1.20399 1.21775 0.92378 0.88782 0.95429 1.21448 0.95778 0.95837 0.94152 0.88204 1.19602 0.93255 0.94342 1.00230 1.21108 0.93192 0.99655 1.00962 1.21346 0.97402 0.95553 1.00056 1.21464 0.99505 0.93722 0.99835 1.21448 0.91932 1.01089 0.99300 1.21264 0.99401 0.92841 1.00194 0.89651 0.93689 0.91492 0.88075 0.87202 0.75230 0.75945 0.75233 0.95917 0.98754 0.94543 0.95606 0.92898 0.87812 0.84799 0.83664 0.83434 0.84471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.65 8.83 71.98 0.64 -3.02 16 2 C -0.08 -2.07 2.37 -11.54 -0.03 -2.10 16 3 H 0.12 2.62 7.95 -2.39 -0.02 2.60 16 4 C -0.12 -2.66 4.52 29.85 0.13 -2.53 16 5 C 0.52 10.48 7.82 87.66 0.69 11.16 16 6 N -0.84 -9.73 8.87 -173.53 -1.54 -11.27 16 7 O -0.58 -15.52 14.80 -3.02 -0.04 -15.56 16 8 C 0.52 17.13 7.15 87.66 0.63 17.76 16 9 O -0.58 -23.90 15.56 -3.03 -0.05 -23.94 16 10 N -0.70 -22.82 4.99 -436.91 -2.18 -25.00 16 11 C 0.15 5.73 2.74 46.18 0.13 5.86 16 12 H 0.07 3.18 6.63 -2.39 -0.02 3.16 16 13 C 0.19 9.80 5.12 86.73 0.44 10.24 16 14 N -0.62 -32.46 3.39 -691.96 -2.35 -34.81 16 15 C -0.24 -13.86 10.28 84.03 0.86 -13.00 16 16 H 0.09 4.61 7.83 -2.91 -0.02 4.59 16 17 C -0.06 -3.68 5.49 84.86 0.47 -3.22 16 18 N -0.95 -58.63 10.31 21.65 0.22 -58.41 16 19 Si 0.98 46.36 29.55 68.60 2.03 48.39 16 20 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 21 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 22 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 23 C 0.14 5.80 6.64 86.86 0.58 6.37 16 24 C -0.05 -1.75 2.89 -10.15 -0.03 -1.78 16 25 H 0.10 3.05 7.83 -2.39 -0.02 3.04 16 26 C -0.07 -2.10 5.00 -19.87 -0.10 -2.20 16 27 C -0.13 -3.81 8.31 22.27 0.19 -3.63 16 28 C -0.13 -2.95 10.05 22.27 0.22 -2.73 16 29 C -0.13 -2.49 10.05 22.27 0.22 -2.27 16 30 C -0.12 -2.31 10.05 22.27 0.22 -2.08 16 31 C -0.12 -2.72 9.69 22.27 0.22 -2.50 16 32 H 0.08 2.16 5.95 -2.39 -0.01 2.15 16 33 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.07 1.59 7.57 -2.39 -0.02 1.58 16 35 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 36 H 0.11 2.21 7.95 -2.39 -0.02 2.20 16 37 H 0.42 2.66 8.83 -92.71 -0.82 1.84 16 38 H 0.41 3.76 8.93 -92.71 -0.83 2.93 16 39 H 0.41 10.90 7.98 -92.71 -0.74 10.16 16 40 H 0.02 1.28 7.27 -2.39 -0.02 1.27 16 41 H -0.01 -0.36 7.51 -2.38 -0.02 -0.37 16 42 H 0.25 14.85 8.31 -92.70 -0.77 14.08 16 43 H 0.03 1.07 6.63 -2.38 -0.02 1.06 16 44 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 45 H 0.10 3.36 7.01 -2.91 -0.02 3.34 16 46 H 0.13 2.61 8.06 -2.91 -0.02 2.59 16 47 H 0.15 1.97 8.06 -2.91 -0.02 1.95 16 48 H 0.15 1.95 8.06 -2.91 -0.02 1.92 16 49 H 0.14 2.58 7.99 -2.91 -0.02 2.55 16 Total: -1.00 -79.44 396.56 0.18 -79.26 By element: Atomic # 1 Polarization: 32.40 SS G_CDS: -1.39 Total: 31.01 kcal Atomic # 6 Polarization: 4.86 SS G_CDS: 5.48 Total: 10.34 kcal Atomic # 7 Polarization: -123.65 SS G_CDS: -5.85 Total: -129.49 kcal Atomic # 8 Polarization: -39.41 SS G_CDS: -0.09 Total: -39.50 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 2.03 Total: 48.39 kcal Total: -79.44 0.18 -79.26 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707097395.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.175 kcal (2) G-P(sol) polarization free energy of solvation -79.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds