Wall clock time and date at job start Wed Apr 1 2020 03:24:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.34774 * 120.00467 * 2 1 4 4 O 1.21281 * 119.99717 * 354.79864 * 3 2 1 5 5 C 1.50695 * 120.00424 * 174.79913 * 3 2 1 6 6 C 1.50702 * 115.55034 * 293.66923 * 5 3 2 7 7 O 1.21280 * 119.99870 * 99.05381 * 6 5 3 8 8 N 1.34778 * 120.00309 * 279.05904 * 6 5 3 9 9 C 1.46501 * 120.00026 * 174.91783 * 8 6 5 10 10 C 1.50704 * 109.46598 * 180.02562 * 9 8 6 11 11 C 1.38234 * 119.99797 * 90.00901 * 10 9 8 12 12 C 1.38240 * 119.99781 * 179.97438 * 11 10 9 13 13 C 1.38236 * 119.99976 * 359.95075 * 12 11 10 14 14 C 1.50699 * 119.99944 * 180.02562 * 13 12 11 15 15 H 1.08998 * 109.47044 * 19.99988 * 14 13 12 16 16 C 1.52995 * 109.47287 * 259.99853 * 14 13 12 17 17 N 1.46504 * 109.46989 * 140.00022 * 14 13 12 18 18 C 1.36941 * 119.99823 * 205.00554 * 17 14 13 19 19 H 1.07996 * 119.99985 * 359.97438 * 18 17 14 20 20 C 1.38803 * 119.99894 * 180.02562 * 18 17 14 21 21 N 1.31618 * 120.00251 * 179.72045 * 20 18 17 22 22 Si 1.86803 * 120.00317 * 359.97438 * 20 18 17 23 23 H 1.48506 * 109.47148 * 269.72993 * 22 20 18 24 24 H 1.48503 * 109.46844 * 29.72268 * 22 20 18 25 25 H 1.48494 * 109.47373 * 149.72470 * 22 20 18 26 26 C 1.38234 * 119.99931 * 0.27417 * 13 12 11 27 27 C 1.38237 * 119.99699 * 269.97331 * 10 9 8 28 28 C 1.52997 * 117.52169 * 79.36927 * 5 3 2 29 29 C 1.52998 * 117.50109 * 148.00067 * 5 3 2 30 30 H 1.09004 * 109.47703 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47551 * 299.99831 * 1 2 3 32 32 H 1.09005 * 109.47342 * 60.00050 * 1 2 3 33 33 H 0.97005 * 120.00265 * 180.02562 * 2 1 3 34 34 H 0.96994 * 119.99815 * 354.92639 * 8 6 5 35 35 H 1.08999 * 109.46759 * 60.00427 * 9 8 6 36 36 H 1.08996 * 109.47032 * 300.00285 * 9 8 6 37 37 H 1.08000 * 120.00254 * 359.96534 * 11 10 9 38 38 H 1.07992 * 119.99790 * 179.97438 * 12 11 10 39 39 H 1.08994 * 109.47512 * 180.02562 * 16 14 13 40 40 H 1.09007 * 109.47086 * 300.00024 * 16 14 13 41 41 H 1.09002 * 109.47088 * 59.99852 * 16 14 13 42 42 H 0.96999 * 119.99892 * 24.99396 * 17 14 13 43 43 H 0.97003 * 120.00410 * 180.27110 * 21 20 18 44 44 H 1.08000 * 120.00406 * 179.72820 * 26 13 12 45 45 H 1.07992 * 120.00495 * 0.02562 * 27 10 9 46 46 H 1.08996 * 117.50118 * 214.96979 * 28 5 3 47 47 H 1.08999 * 117.49819 * 359.97438 * 28 5 3 48 48 H 1.08996 * 117.50006 * 359.97438 * 29 5 3 49 49 H 1.09006 * 117.50203 * 144.97195 * 29 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5363 2.2153 -0.0952 5 6 3.6412 1.1698 0.1183 6 6 4.1904 0.6821 1.4342 7 8 4.5962 -0.4561 1.5374 8 7 4.2306 1.5108 2.4964 9 6 4.6597 1.0064 3.8032 10 6 4.6148 2.1245 4.8125 11 6 3.4611 2.3543 5.5385 12 6 3.4201 3.3797 6.4648 13 6 4.5331 4.1745 6.6658 14 6 4.4885 5.2919 7.6760 15 1 3.6762 5.1127 8.3803 16 6 4.2552 6.6215 6.9559 17 7 5.7605 5.3458 8.4009 18 6 5.8094 5.8851 9.6587 19 1 4.9104 6.2709 10.1161 20 6 7.0146 5.9366 10.3453 21 7 7.0627 6.4599 11.5521 22 14 8.5698 5.2699 9.5539 23 1 8.7253 3.8342 9.9007 24 1 8.4762 5.4154 8.0790 25 1 9.7440 6.0297 10.0528 26 6 5.6852 3.9476 5.9364 27 6 5.7276 2.9199 5.0129 28 6 4.4502 0.8606 -1.1429 29 6 4.4040 2.2882 -0.5946 30 1 -0.3635 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.9500 -0.8401 -0.0004 34 1 3.9752 2.4411 2.3956 35 1 5.6779 0.6244 3.7286 36 1 3.9930 0.2044 4.1199 37 1 2.5918 1.7329 5.3820 38 1 2.5187 3.5594 7.0317 39 1 4.2234 7.4297 7.6864 40 1 5.0676 6.8006 6.2515 41 1 3.3089 6.5813 6.4165 42 1 6.5680 4.9994 7.9900 43 1 7.9057 6.4995 12.0303 44 1 6.5534 4.5714 6.0903 45 1 6.6289 2.7403 4.4458 46 1 5.3796 0.3044 -1.0209 47 1 3.8959 0.6546 -2.0586 48 1 3.8193 3.0218 -1.1495 49 1 5.3029 2.6715 -0.1116 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717115986.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:36 Heat of formation + Delta-G solvation = -31.886572 kcal Electronic energy + Delta-G solvation = -29321.086512 eV Core-core repulsion = 25248.168505 eV Total energy + Delta-G solvation = -4072.918007 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.81831 -40.73444 -40.02490 -37.67770 -37.12835 -35.88800 -35.67349 -34.18532 -32.22940 -31.82122 -30.46838 -28.69061 -27.50899 -25.79116 -25.07127 -23.88816 -23.46407 -23.01480 -22.48903 -21.26102 -20.89570 -19.94830 -19.48598 -17.54720 -17.35652 -17.04002 -17.01824 -16.94169 -16.33539 -16.29257 -15.92800 -15.81337 -15.39723 -15.33165 -14.89570 -14.77001 -14.58503 -14.27950 -14.18502 -14.06517 -13.87296 -13.81495 -13.54360 -13.17422 -13.15328 -12.86972 -12.78100 -12.62781 -12.53781 -12.29210 -12.11717 -11.97431 -11.75902 -11.74525 -11.57333 -11.27248 -11.06602 -10.90145 -10.25367 -10.23830 -9.84640 -9.63042 -9.33654 -8.03322 -5.36718 0.23814 0.47702 1.11151 1.34395 1.38465 1.45102 1.47400 1.98817 2.06165 2.46500 2.63139 2.86381 3.28192 3.51081 3.55523 3.59596 3.62291 3.72540 3.76937 3.88291 3.93393 4.10503 4.28806 4.38325 4.49263 4.54510 4.54855 4.57021 4.62927 4.66988 4.69099 4.74543 4.84701 4.89599 4.93718 5.02597 5.05934 5.07680 5.17932 5.22965 5.29284 5.37013 5.49915 5.57505 5.71041 5.79668 6.03615 6.21069 6.30518 6.37232 6.98554 7.03829 7.06055 7.81406 8.00875 9.17997 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.018809 B = 0.002078 C = 0.002001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.260988 B =13468.370851 C =13989.797135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.719 5.719 3 C 0.557 3.443 4 O -0.563 6.563 5 C -0.211 4.211 6 C 0.561 3.439 7 O -0.557 6.557 8 N -0.708 5.708 9 C 0.171 3.829 10 C -0.117 4.117 11 C -0.092 4.092 12 C -0.121 4.121 13 C -0.074 4.074 14 C 0.204 3.796 15 H 0.054 0.946 16 C -0.150 4.150 17 N -0.749 5.749 18 C -0.227 4.227 19 H 0.059 0.941 20 C -0.064 4.064 21 N -0.983 5.983 22 Si 0.949 3.051 23 H -0.280 1.280 24 H -0.251 1.251 25 H -0.295 1.295 26 C -0.129 4.129 27 C -0.094 4.094 28 C -0.114 4.114 29 C -0.127 4.127 30 H 0.109 0.891 31 H 0.051 0.949 32 H 0.058 0.942 33 H 0.416 0.584 34 H 0.411 0.589 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.143 0.857 38 H 0.135 0.865 39 H 0.039 0.961 40 H 0.049 0.951 41 H 0.071 0.929 42 H 0.365 0.635 43 H 0.257 0.743 44 H 0.112 0.888 45 H 0.140 0.860 46 H 0.117 0.883 47 H 0.122 0.878 48 H 0.113 0.887 49 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.985 -16.037 -30.504 35.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.370 5.370 3 C 0.342 3.658 4 O -0.441 6.441 5 C -0.218 4.218 6 C 0.346 3.654 7 O -0.435 6.435 8 N -0.359 5.359 9 C 0.048 3.952 10 C -0.117 4.117 11 C -0.111 4.111 12 C -0.139 4.139 13 C -0.075 4.075 14 C 0.096 3.904 15 H 0.072 0.928 16 C -0.210 4.210 17 N -0.393 5.393 18 C -0.358 4.358 19 H 0.077 0.923 20 C -0.256 4.256 21 N -0.633 5.633 22 Si 0.777 3.223 23 H -0.206 1.206 24 H -0.176 1.176 25 H -0.222 1.222 26 C -0.148 4.148 27 C -0.112 4.112 28 C -0.151 4.151 29 C -0.165 4.165 30 H 0.128 0.872 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.252 0.748 34 H 0.247 0.753 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.161 0.839 38 H 0.153 0.847 39 H 0.058 0.942 40 H 0.069 0.931 41 H 0.089 0.911 42 H 0.200 0.800 43 H 0.066 0.934 44 H 0.130 0.870 45 H 0.157 0.843 46 H 0.135 0.865 47 H 0.141 0.859 48 H 0.131 0.869 49 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -10.263 -16.035 -30.256 35.747 hybrid contribution 1.111 0.198 0.588 1.273 sum -9.152 -15.837 -29.667 34.853 Atomic orbital electron populations 1.21751 0.78017 1.04492 1.01864 1.45791 1.08707 1.08563 1.73904 1.19214 0.87174 0.83862 0.75568 1.90726 1.69992 1.32779 1.50608 1.21369 0.92350 1.13094 0.94956 1.19202 0.77565 0.84766 0.83876 1.90719 1.48509 1.19863 1.84446 1.46068 1.67130 1.14302 1.08384 1.20146 1.01482 0.93717 0.79819 1.19764 0.94508 0.98166 0.99301 1.21213 0.97929 0.96999 0.94942 1.21180 0.98198 0.95446 0.99117 1.20272 0.94709 0.96400 0.96100 1.19360 0.88153 0.92145 0.90723 0.92770 1.22240 1.01310 0.97616 0.99822 1.42879 1.06450 1.74051 1.15944 1.19023 0.95071 1.30400 0.91305 0.92258 1.25459 1.00946 1.02231 0.96926 1.69873 1.26469 1.52814 1.14161 0.85496 0.79660 0.77948 0.79229 1.20645 1.17587 1.22169 1.21023 0.97730 0.98996 0.97024 1.21171 0.98725 0.94042 0.97296 1.23196 1.00716 0.98277 0.92937 1.23215 1.00817 0.92032 1.00401 0.87205 0.93013 0.92303 0.74843 0.75262 0.90207 0.90238 0.83947 0.84742 0.94189 0.93141 0.91056 0.80030 0.93382 0.87037 0.84252 0.86475 0.85930 0.86850 0.86149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.78 10.71 127.77 1.37 2.14 16 2 N -0.72 -8.88 5.71 -484.54 -2.77 -11.64 16 3 C 0.56 9.69 7.06 87.66 0.62 10.31 16 4 O -0.56 -13.72 16.73 -3.03 -0.05 -13.77 16 5 C -0.21 -3.03 2.24 -53.68 -0.12 -3.16 16 6 C 0.56 9.94 6.97 87.66 0.61 10.55 16 7 O -0.56 -12.85 17.02 -3.03 -0.05 -12.90 16 8 N -0.71 -11.43 5.55 -466.78 -2.59 -14.02 16 9 C 0.17 2.93 5.80 85.63 0.50 3.43 16 10 C -0.12 -2.33 5.25 -19.86 -0.10 -2.43 16 11 C -0.09 -1.92 9.70 22.27 0.22 -1.70 16 12 C -0.12 -3.07 9.67 22.27 0.22 -2.85 16 13 C -0.07 -2.27 4.95 -19.87 -0.10 -2.37 16 14 C 0.20 7.64 3.09 44.24 0.14 7.77 16 15 H 0.05 2.12 7.94 -2.39 -0.02 2.10 16 16 C -0.15 -5.09 9.47 71.98 0.68 -4.41 16 17 N -0.75 -34.78 4.87 -326.51 -1.59 -36.37 16 18 C -0.23 -12.90 10.41 84.03 0.87 -12.03 16 19 H 0.06 3.68 8.06 -2.91 -0.02 3.65 16 20 C -0.06 -3.80 5.50 84.86 0.47 -3.33 16 21 N -0.98 -63.17 13.97 21.65 0.30 -62.86 16 22 Si 0.95 45.63 27.74 68.60 1.90 47.54 16 23 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 24 H -0.25 -10.81 6.51 99.48 0.65 -10.17 16 25 H -0.29 -14.34 7.11 99.48 0.71 -13.63 16 26 C -0.13 -3.72 9.05 22.27 0.20 -3.52 16 27 C -0.09 -2.12 9.70 22.27 0.22 -1.90 16 28 C -0.11 -1.10 9.87 30.59 0.30 -0.79 16 29 C -0.13 -1.40 9.76 30.59 0.30 -1.10 16 30 H 0.11 0.33 8.14 -2.38 -0.02 0.31 16 31 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 33 H 0.42 3.77 8.83 -92.70 -0.82 2.95 16 34 H 0.41 6.14 8.47 -92.71 -0.79 5.36 16 35 H 0.08 1.40 8.09 -2.39 -0.02 1.38 16 36 H 0.08 1.35 8.08 -2.39 -0.02 1.33 16 37 H 0.14 2.29 8.06 -2.91 -0.02 2.27 16 38 H 0.13 3.05 8.04 -2.91 -0.02 3.03 16 39 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 41 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 42 H 0.37 16.33 3.94 -92.71 -0.36 15.96 16 43 H 0.26 15.78 8.31 -92.71 -0.77 15.01 16 44 H 0.11 3.43 6.93 -2.91 -0.02 3.41 16 45 H 0.14 2.56 8.06 -2.91 -0.02 2.53 16 46 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 47 H 0.12 0.83 8.14 -2.39 -0.02 0.81 16 48 H 0.11 1.32 8.01 -2.39 -0.02 1.30 16 49 H 0.12 1.08 8.14 -2.38 -0.02 1.06 16 Total: -1.00 -76.42 415.61 0.49 -75.92 By element: Atomic # 1 Polarization: 34.54 SS G_CDS: -1.04 Total: 33.49 kcal Atomic # 6 Polarization: -11.76 SS G_CDS: 6.38 Total: -5.38 kcal Atomic # 7 Polarization: -118.25 SS G_CDS: -6.64 Total: -124.90 kcal Atomic # 8 Polarization: -26.57 SS G_CDS: -0.10 Total: -26.67 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 1.90 Total: 47.54 kcal Total: -76.42 0.49 -75.92 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717115986.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.036 kcal (2) G-P(sol) polarization free energy of solvation -76.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds