Wall clock time and date at job start Wed Apr 1 2020 04:15:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 109.47334 * 2 1 4 4 C 1.52999 * 109.47127 * 120.00597 * 2 1 3 5 5 C 1.53007 * 109.46995 * 184.99875 * 4 2 1 6 6 C 1.52999 * 109.46995 * 180.02562 * 5 4 2 7 7 N 1.46499 * 109.47119 * 179.97438 * 6 5 4 8 8 C 1.36939 * 119.99962 * 179.97438 * 7 6 5 9 9 H 1.07997 * 119.99674 * 0.02562 * 8 7 6 10 10 C 1.38806 * 119.99968 * 180.02562 * 8 7 6 11 11 N 1.31618 * 120.00136 * 359.97438 * 10 8 7 12 12 Si 1.86804 * 120.00154 * 179.97438 * 10 8 7 13 13 H 1.48504 * 109.46727 * 89.99671 * 12 10 8 14 14 H 1.48501 * 109.47222 * 209.99833 * 12 10 8 15 15 H 1.48499 * 109.47034 * 329.99966 * 12 10 8 16 16 N 1.46501 * 109.47296 * 240.00514 * 2 1 3 17 17 C 1.34777 * 120.00076 * 84.99705 * 16 2 1 18 18 O 1.21281 * 119.99872 * 0.02562 * 17 16 2 19 19 C 1.50700 * 120.00163 * 180.02562 * 17 16 2 20 20 H 1.09007 * 109.36049 * 300.26522 * 19 17 16 21 21 C 1.52648 * 109.36467 * 60.00027 * 19 17 16 22 22 N 1.46121 * 110.94708 * 69.71604 * 21 19 17 23 23 C 1.34566 * 121.13727 * 40.16156 * 22 21 19 24 24 O 1.21547 * 120.36528 * 172.07991 * 23 22 21 25 25 C 1.47827 * 119.29436 * 352.06151 * 23 22 21 26 26 C 1.39328 * 120.93122 * 166.34417 * 25 23 22 27 27 C 1.38066 * 119.60111 * 181.71358 * 26 25 23 28 28 C 1.38382 * 120.17244 * 359.93584 * 27 26 25 29 29 C 1.38409 * 120.41355 * 359.65713 * 28 27 26 30 30 C 1.37833 * 119.97010 * 0.09178 * 29 28 27 31 31 H 1.09007 * 109.47442 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47526 * 299.99611 * 1 2 3 33 33 H 1.08999 * 109.47167 * 59.99386 * 1 2 3 34 34 H 1.08996 * 109.47105 * 304.99666 * 4 2 1 35 35 H 1.09000 * 109.47020 * 65.00193 * 4 2 1 36 36 H 1.08996 * 109.47023 * 299.99842 * 5 4 2 37 37 H 1.09000 * 109.46977 * 60.00291 * 5 4 2 38 38 H 1.09007 * 109.47220 * 300.00508 * 6 5 4 39 39 H 1.08996 * 109.47210 * 59.99865 * 6 5 4 40 40 H 0.96996 * 119.99926 * 359.97438 * 7 6 5 41 41 H 0.97003 * 120.00271 * 180.02562 * 11 10 8 42 42 H 0.96996 * 120.00206 * 265.00623 * 16 2 1 43 43 H 1.09002 * 109.17597 * 190.07863 * 21 19 17 44 44 H 1.09004 * 109.17344 * 309.35168 * 21 19 17 45 45 H 0.97007 * 119.46720 * 220.13403 * 22 21 19 46 46 H 1.07996 * 120.19705 * 1.71456 * 26 25 23 47 47 H 1.07996 * 119.91193 * 179.97438 * 27 26 25 48 48 H 1.07995 * 119.79042 * 179.67852 * 28 27 26 49 49 H 1.08010 * 120.01683 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7214 1.2492 5 6 3.5648 -0.6134 1.3136 6 6 4.0749 -1.3353 2.5624 7 7 5.5350 -1.2325 2.6238 8 6 6.2188 -1.8070 3.6619 9 1 5.6817 -2.3361 4.4351 10 6 7.6021 -1.7091 3.7203 11 7 8.2567 -1.0646 2.7777 12 14 8.5349 -2.4921 5.1368 13 1 8.8970 -3.8874 4.7798 14 1 9.7704 -1.7136 5.4064 15 1 7.6788 -2.4978 6.3501 16 7 2.0183 -0.6905 -1.1962 17 6 2.1470 -0.0181 -2.3572 18 8 1.8589 1.1588 -2.4114 19 6 2.6488 -0.7285 -3.5878 20 1 3.6461 -1.1243 -3.3952 21 6 1.7049 -1.8787 -3.9286 22 7 0.4199 -1.3752 -4.4087 23 6 0.3527 -0.3146 -5.2343 24 8 -0.7058 0.0049 -5.7391 25 6 1.5800 0.4582 -5.5204 26 6 1.6215 1.3736 -6.5700 27 6 2.7929 2.0546 -6.8350 28 6 3.9182 1.8299 -6.0617 29 6 3.8789 0.9277 -5.0128 30 6 2.7141 0.2453 -4.7348 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8899 34 1 1.6054 -0.2619 2.1369 35 1 1.7516 -1.7716 1.2054 36 1 3.9994 -1.0729 0.4258 37 1 3.8532 0.4368 1.3574 38 1 3.6402 -0.8764 3.4504 39 1 3.7865 -2.3855 2.5182 40 1 6.0173 -0.7576 1.9291 41 1 9.2235 -0.9965 2.8183 42 1 2.2489 -1.6316 -1.1528 43 1 2.1590 -2.4972 -4.7028 44 1 1.5417 -2.4840 -3.0369 45 1 -0.3991 -1.8129 -4.1282 46 1 0.7426 1.5493 -7.1725 47 1 2.8308 2.7649 -7.6476 48 1 4.8327 2.3622 -6.2777 49 1 4.7610 0.7576 -4.4131 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717670334.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:15:06 Heat of formation + Delta-G solvation = -47.726795 kcal Electronic energy + Delta-G solvation = -30010.597070 eV Core-core repulsion = 25936.992179 eV Total energy + Delta-G solvation = -4073.604891 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.43100 -39.66635 -38.42434 -36.97723 -36.22298 -34.89655 -32.83072 -32.44636 -31.34948 -31.22053 -29.63456 -29.15523 -25.74564 -25.02599 -24.27765 -23.25969 -22.49556 -21.35818 -20.87525 -20.72191 -19.58226 -17.92081 -17.60819 -17.28938 -17.03941 -16.53856 -16.04413 -15.58150 -15.24914 -14.81527 -14.72413 -14.70116 -14.54585 -14.06153 -13.95332 -13.82256 -13.69912 -13.41715 -13.07368 -12.98147 -12.89085 -12.58153 -12.47491 -12.23545 -12.15632 -11.80528 -11.38257 -11.35779 -11.21147 -10.89440 -10.84554 -10.52317 -10.45515 -10.26826 -10.08773 -10.03663 -9.72278 -9.55103 -9.22414 -9.20108 -9.07001 -8.89874 -6.94930 -5.79346 -3.08119 0.55034 1.03567 2.41411 2.55743 2.79728 2.97585 3.40943 3.46142 3.48038 3.60250 3.92887 4.15353 4.18004 4.44169 4.53821 4.57213 4.69362 4.73641 4.81192 4.91855 4.98518 5.05446 5.09051 5.13030 5.21186 5.36564 5.47874 5.51197 5.54326 5.57979 5.67195 5.73465 5.90049 5.96759 6.01948 6.05637 6.06083 6.15276 6.15404 6.30813 6.35915 6.39463 6.42044 6.59609 6.77791 6.81759 6.85263 7.30929 7.66954 7.85448 8.04122 8.39824 9.50697 10.09305 10.43537 11.43619 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.014298 B = 0.002245 C = 0.002050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.834362 B =12470.662815 C =13656.385525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.142 3.858 3 H 0.089 0.911 4 C -0.122 4.122 5 C -0.125 4.125 6 C 0.153 3.847 7 N -0.735 5.735 8 C -0.240 4.240 9 H 0.070 0.930 10 C -0.015 4.015 11 N -0.934 5.934 12 Si 0.907 3.093 13 H -0.290 1.290 14 H -0.291 1.291 15 H -0.282 1.282 16 N -0.719 5.719 17 C 0.521 3.479 18 O -0.524 6.524 19 C -0.095 4.095 20 H 0.131 0.869 21 C 0.123 3.877 22 N -0.726 5.726 23 C 0.570 3.430 24 O -0.535 6.535 25 C -0.125 4.125 26 C -0.059 4.059 27 C -0.128 4.128 28 C -0.089 4.089 29 C -0.112 4.112 30 C -0.027 4.027 31 H 0.055 0.945 32 H 0.066 0.934 33 H 0.057 0.943 34 H 0.079 0.921 35 H 0.067 0.933 36 H 0.060 0.940 37 H 0.062 0.938 38 H 0.017 0.983 39 H 0.016 0.984 40 H 0.383 0.617 41 H 0.255 0.745 42 H 0.400 0.600 43 H 0.084 0.916 44 H 0.095 0.905 45 H 0.407 0.593 46 H 0.135 0.865 47 H 0.130 0.870 48 H 0.130 0.870 49 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.658 -0.298 -18.794 23.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.038 3.962 3 H 0.107 0.893 4 C -0.161 4.161 5 C -0.163 4.163 6 C 0.025 3.975 7 N -0.379 5.379 8 C -0.371 4.371 9 H 0.088 0.912 10 C -0.211 4.211 11 N -0.583 5.583 12 Si 0.738 3.262 13 H -0.217 1.217 14 H -0.217 1.217 15 H -0.208 1.208 16 N -0.371 5.371 17 C 0.306 3.694 18 O -0.399 6.399 19 C -0.117 4.117 20 H 0.149 0.851 21 C -0.002 4.002 22 N -0.379 5.379 23 C 0.359 3.641 24 O -0.413 6.413 25 C -0.129 4.129 26 C -0.078 4.078 27 C -0.146 4.146 28 C -0.108 4.108 29 C -0.130 4.130 30 C -0.028 4.028 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.076 0.924 34 H 0.098 0.902 35 H 0.086 0.914 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.035 0.965 39 H 0.034 0.966 40 H 0.216 0.784 41 H 0.065 0.935 42 H 0.234 0.766 43 H 0.102 0.898 44 H 0.114 0.886 45 H 0.243 0.757 46 H 0.153 0.847 47 H 0.148 0.852 48 H 0.147 0.853 49 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -15.214 0.739 -18.973 24.330 hybrid contribution 0.747 -0.912 0.894 1.479 sum -14.467 -0.173 -18.079 23.155 Atomic orbital electron populations 1.22162 0.95420 1.01939 1.02465 1.21052 0.93579 0.97817 0.83716 0.89326 1.21852 0.96909 1.00733 0.96591 1.21729 0.93584 1.01465 0.99497 1.20647 0.86201 0.96413 0.94231 1.42377 1.00176 1.66248 1.29060 1.19237 0.89444 1.27085 1.01338 0.91222 1.24750 0.96463 1.01203 0.98674 1.69659 1.07204 1.46962 1.34454 0.86187 0.79525 0.78637 0.81831 1.21709 1.21735 1.20762 1.46058 1.67470 1.14056 1.09550 1.20146 0.77903 0.87361 0.83988 1.90750 1.48804 1.15677 1.84676 1.20731 1.02674 0.95817 0.92517 0.85139 1.21307 0.83540 0.94224 1.01167 1.45566 1.09617 1.32934 1.49804 1.18199 0.88500 0.79782 0.77637 1.90799 1.31141 1.68695 1.50648 1.19594 0.93366 1.00554 0.99343 1.21165 0.98271 0.93092 0.95285 1.21185 0.92765 1.00183 1.00468 1.21362 0.98645 0.96461 0.94285 1.20976 0.97527 0.96567 0.97893 1.19302 0.93220 0.96210 0.94051 0.92550 0.91510 0.92428 0.90245 0.91400 0.92083 0.91966 0.96518 0.96582 0.78356 0.93508 0.76570 0.89834 0.88634 0.75651 0.84730 0.85216 0.85252 0.85047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.54 9.48 37.15 0.35 -1.19 16 2 C 0.14 1.50 2.57 -67.93 -0.17 1.32 16 3 H 0.09 1.15 7.58 -51.93 -0.39 0.76 16 4 C -0.12 -1.32 4.75 -26.73 -0.13 -1.44 16 5 C -0.12 -1.83 5.22 -26.73 -0.14 -1.97 16 6 C 0.15 2.93 6.26 -4.04 -0.03 2.90 16 7 N -0.73 -18.43 5.60 -59.91 -0.34 -18.76 16 8 C -0.24 -6.68 9.99 -15.06 -0.15 -6.83 16 9 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 10 C -0.02 -0.43 5.50 -17.43 -0.10 -0.53 16 11 N -0.93 -28.07 13.06 55.49 0.72 -27.34 16 12 Si 0.91 22.19 29.55 -169.99 -5.02 17.17 16 13 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 14 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 15 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 16 N -0.72 -6.60 4.35 -53.81 -0.23 -6.84 16 17 C 0.52 5.77 6.98 -10.99 -0.08 5.70 16 18 O -0.52 -8.18 15.69 5.56 0.09 -8.09 16 19 C -0.10 -0.77 2.73 -93.15 -0.25 -1.03 16 20 H 0.13 0.74 8.07 -51.92 -0.42 0.32 16 21 C 0.12 0.70 6.37 -4.43 -0.03 0.68 16 22 N -0.73 -6.12 5.43 -61.75 -0.34 -6.46 16 23 C 0.57 6.98 7.81 -12.43 -0.10 6.88 16 24 O -0.54 -8.25 17.37 5.32 0.09 -8.15 16 25 C -0.13 -1.46 5.80 -105.06 -0.61 -2.06 16 26 C -0.06 -0.63 9.64 -39.24 -0.38 -1.01 16 27 C -0.13 -1.11 10.04 -39.59 -0.40 -1.51 16 28 C -0.09 -0.76 10.04 -39.47 -0.40 -1.16 16 29 C -0.11 -1.05 9.71 -39.67 -0.39 -1.44 16 30 C -0.03 -0.27 4.17 -104.31 -0.43 -0.71 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.06 0.88 7.75 -51.93 -0.40 0.47 16 37 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 38 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 40 H 0.38 10.10 7.67 -40.82 -0.31 9.79 16 41 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 42 H 0.40 2.66 7.91 -40.82 -0.32 2.34 16 43 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.10 0.30 7.28 -51.93 -0.38 -0.07 16 45 H 0.41 2.85 8.92 -40.82 -0.36 2.48 16 46 H 0.13 1.36 7.78 -52.49 -0.41 0.95 16 47 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 48 H 0.13 0.80 8.06 -52.49 -0.42 0.37 16 49 H 0.13 1.05 8.06 -52.48 -0.42 0.62 16 LS Contribution 405.97 15.07 6.12 6.12 Total: -1.00 -37.20 405.97 -9.94 -47.14 By element: Atomic # 1 Polarization: 16.22 SS G_CDS: -7.62 Total: 8.60 kcal Atomic # 6 Polarization: 0.03 SS G_CDS: -3.42 Total: -3.38 kcal Atomic # 7 Polarization: -59.22 SS G_CDS: -0.18 Total: -59.40 kcal Atomic # 8 Polarization: -16.43 SS G_CDS: 0.18 Total: -16.25 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -37.20 -9.94 -47.14 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717670334.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.586 kcal (2) G-P(sol) polarization free energy of solvation -37.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds