Wall clock time and date at job start Wed Apr 1 2020 04:15:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 109.47334 * 2 1 4 4 C 1.52999 * 109.47127 * 120.00597 * 2 1 3 5 5 C 1.53007 * 109.46995 * 184.99875 * 4 2 1 6 6 C 1.52999 * 109.46995 * 180.02562 * 5 4 2 7 7 N 1.46499 * 109.47119 * 179.97438 * 6 5 4 8 8 C 1.36939 * 119.99962 * 179.97438 * 7 6 5 9 9 H 1.07997 * 119.99674 * 0.02562 * 8 7 6 10 10 C 1.38806 * 119.99968 * 180.02562 * 8 7 6 11 11 N 1.31618 * 120.00136 * 359.97438 * 10 8 7 12 12 Si 1.86804 * 120.00154 * 179.97438 * 10 8 7 13 13 H 1.48504 * 109.46727 * 89.99671 * 12 10 8 14 14 H 1.48501 * 109.47222 * 209.99833 * 12 10 8 15 15 H 1.48499 * 109.47034 * 329.99966 * 12 10 8 16 16 N 1.46501 * 109.47296 * 240.00514 * 2 1 3 17 17 C 1.34777 * 120.00076 * 84.99705 * 16 2 1 18 18 O 1.21281 * 119.99872 * 0.02562 * 17 16 2 19 19 C 1.50700 * 120.00163 * 180.02562 * 17 16 2 20 20 H 1.09007 * 109.36049 * 300.26522 * 19 17 16 21 21 C 1.52648 * 109.36467 * 60.00027 * 19 17 16 22 22 N 1.46121 * 110.94708 * 69.71604 * 21 19 17 23 23 C 1.34566 * 121.13727 * 40.16156 * 22 21 19 24 24 O 1.21547 * 120.36528 * 172.07991 * 23 22 21 25 25 C 1.47827 * 119.29436 * 352.06151 * 23 22 21 26 26 C 1.39328 * 120.93122 * 166.34417 * 25 23 22 27 27 C 1.38066 * 119.60111 * 181.71358 * 26 25 23 28 28 C 1.38382 * 120.17244 * 359.93584 * 27 26 25 29 29 C 1.38409 * 120.41355 * 359.65713 * 28 27 26 30 30 C 1.37833 * 119.97010 * 0.09178 * 29 28 27 31 31 H 1.09007 * 109.47442 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47526 * 299.99611 * 1 2 3 33 33 H 1.08999 * 109.47167 * 59.99386 * 1 2 3 34 34 H 1.08996 * 109.47105 * 304.99666 * 4 2 1 35 35 H 1.09000 * 109.47020 * 65.00193 * 4 2 1 36 36 H 1.08996 * 109.47023 * 299.99842 * 5 4 2 37 37 H 1.09000 * 109.46977 * 60.00291 * 5 4 2 38 38 H 1.09007 * 109.47220 * 300.00508 * 6 5 4 39 39 H 1.08996 * 109.47210 * 59.99865 * 6 5 4 40 40 H 0.96996 * 119.99926 * 359.97438 * 7 6 5 41 41 H 0.97003 * 120.00271 * 180.02562 * 11 10 8 42 42 H 0.96996 * 120.00206 * 265.00623 * 16 2 1 43 43 H 1.09002 * 109.17597 * 190.07863 * 21 19 17 44 44 H 1.09004 * 109.17344 * 309.35168 * 21 19 17 45 45 H 0.97007 * 119.46720 * 220.13403 * 22 21 19 46 46 H 1.07996 * 120.19705 * 1.71456 * 26 25 23 47 47 H 1.07996 * 119.91193 * 179.97438 * 27 26 25 48 48 H 1.07995 * 119.79042 * 179.67852 * 28 27 26 49 49 H 1.08010 * 120.01683 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7214 1.2492 5 6 3.5648 -0.6134 1.3136 6 6 4.0749 -1.3353 2.5624 7 7 5.5350 -1.2325 2.6238 8 6 6.2188 -1.8070 3.6619 9 1 5.6817 -2.3361 4.4351 10 6 7.6021 -1.7091 3.7203 11 7 8.2567 -1.0646 2.7777 12 14 8.5349 -2.4921 5.1368 13 1 8.8970 -3.8874 4.7798 14 1 9.7704 -1.7136 5.4064 15 1 7.6788 -2.4978 6.3501 16 7 2.0183 -0.6905 -1.1962 17 6 2.1470 -0.0181 -2.3572 18 8 1.8589 1.1588 -2.4114 19 6 2.6488 -0.7285 -3.5878 20 1 3.6461 -1.1243 -3.3952 21 6 1.7049 -1.8787 -3.9286 22 7 0.4199 -1.3752 -4.4087 23 6 0.3527 -0.3146 -5.2343 24 8 -0.7058 0.0049 -5.7391 25 6 1.5800 0.4582 -5.5204 26 6 1.6215 1.3736 -6.5700 27 6 2.7929 2.0546 -6.8350 28 6 3.9182 1.8299 -6.0617 29 6 3.8789 0.9277 -5.0128 30 6 2.7141 0.2453 -4.7348 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8899 34 1 1.6054 -0.2619 2.1369 35 1 1.7516 -1.7716 1.2054 36 1 3.9994 -1.0729 0.4258 37 1 3.8532 0.4368 1.3574 38 1 3.6402 -0.8764 3.4504 39 1 3.7865 -2.3855 2.5182 40 1 6.0173 -0.7576 1.9291 41 1 9.2235 -0.9965 2.8183 42 1 2.2489 -1.6316 -1.1528 43 1 2.1590 -2.4972 -4.7028 44 1 1.5417 -2.4840 -3.0369 45 1 -0.3991 -1.8129 -4.1282 46 1 0.7426 1.5493 -7.1725 47 1 2.8308 2.7649 -7.6476 48 1 4.8327 2.3622 -6.2777 49 1 4.7610 0.7576 -4.4131 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717670334.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:15:05 Heat of formation + Delta-G solvation = -74.611653 kcal Electronic energy + Delta-G solvation = -30011.762885 eV Core-core repulsion = 25936.992179 eV Total energy + Delta-G solvation = -4074.770706 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.19116 -40.54882 -39.21420 -38.00121 -37.06464 -36.48283 -34.18353 -33.40002 -32.48717 -32.05161 -30.96335 -29.94344 -27.22179 -25.73013 -25.00853 -24.80756 -23.44828 -22.39949 -22.07080 -21.59511 -20.32352 -19.10700 -18.65902 -18.36548 -18.02555 -17.41878 -16.83381 -16.61692 -16.32089 -16.02948 -15.71972 -15.70678 -15.45113 -15.32767 -15.24929 -14.86177 -14.71117 -14.46769 -14.27001 -13.83653 -13.57607 -13.43812 -13.36999 -13.27354 -13.09248 -13.00460 -12.76248 -12.51401 -12.37010 -12.23638 -12.08645 -12.04247 -11.83787 -11.68632 -11.48501 -11.13958 -10.97932 -10.91255 -10.30324 -10.06581 -9.95445 -9.77332 -8.98294 -7.94470 -5.23176 -0.20930 0.31268 1.48581 1.50089 1.58542 1.59393 1.74117 2.08923 2.24137 2.57014 2.85407 3.29726 3.39476 3.45376 3.58879 3.62980 3.83647 3.89552 4.01493 4.12897 4.13979 4.29385 4.32127 4.33227 4.41748 4.44736 4.53891 4.60058 4.66916 4.71153 4.80906 4.83017 4.89854 4.93859 4.96794 5.02902 5.14703 5.26917 5.29690 5.36346 5.40380 5.45488 5.45961 5.53005 5.59561 5.77165 5.91603 6.02028 6.28552 6.56477 7.05232 7.26312 7.34367 8.12070 8.33675 9.29185 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.014298 B = 0.002245 C = 0.002050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.834362 B =12470.662815 C =13656.385525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.147 3.853 3 H 0.059 0.941 4 C -0.108 4.108 5 C -0.112 4.112 6 C 0.149 3.851 7 N -0.750 5.750 8 C -0.246 4.246 9 H 0.076 0.924 10 C -0.077 4.077 11 N -0.970 5.970 12 Si 0.973 3.027 13 H -0.284 1.284 14 H -0.297 1.297 15 H -0.270 1.270 16 N -0.707 5.707 17 C 0.518 3.482 18 O -0.577 6.577 19 C -0.093 4.093 20 H 0.161 0.839 21 C 0.119 3.881 22 N -0.715 5.715 23 C 0.561 3.439 24 O -0.583 6.583 25 C -0.151 4.151 26 C -0.079 4.079 27 C -0.128 4.128 28 C -0.091 4.091 29 C -0.124 4.124 30 C -0.036 4.036 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.034 0.966 34 H 0.085 0.915 35 H 0.093 0.907 36 H 0.066 0.934 37 H 0.042 0.958 38 H 0.015 0.985 39 H 0.029 0.971 40 H 0.372 0.628 41 H 0.251 0.749 42 H 0.416 0.584 43 H 0.108 0.892 44 H 0.130 0.870 45 H 0.414 0.586 46 H 0.128 0.872 47 H 0.155 0.845 48 H 0.155 0.845 49 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.433 -2.298 -18.044 23.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.042 3.958 3 H 0.077 0.923 4 C -0.146 4.146 5 C -0.150 4.150 6 C 0.023 3.977 7 N -0.392 5.392 8 C -0.377 4.377 9 H 0.094 0.906 10 C -0.269 4.269 11 N -0.621 5.621 12 Si 0.802 3.198 13 H -0.211 1.211 14 H -0.223 1.223 15 H -0.195 1.195 16 N -0.360 5.360 17 C 0.305 3.695 18 O -0.455 6.455 19 C -0.114 4.114 20 H 0.178 0.822 21 C -0.005 4.005 22 N -0.367 5.367 23 C 0.350 3.650 24 O -0.465 6.465 25 C -0.154 4.154 26 C -0.098 4.098 27 C -0.146 4.146 28 C -0.108 4.108 29 C -0.142 4.142 30 C -0.037 4.037 31 H 0.096 0.904 32 H 0.092 0.908 33 H 0.053 0.947 34 H 0.103 0.897 35 H 0.111 0.889 36 H 0.084 0.916 37 H 0.061 0.939 38 H 0.033 0.967 39 H 0.046 0.954 40 H 0.204 0.796 41 H 0.060 0.940 42 H 0.254 0.746 43 H 0.126 0.874 44 H 0.148 0.852 45 H 0.251 0.749 46 H 0.146 0.854 47 H 0.172 0.828 48 H 0.173 0.827 49 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -15.012 -1.342 -18.177 23.613 hybrid contribution 0.663 -0.263 0.682 0.987 sum -14.349 -1.605 -17.495 22.684 Atomic orbital electron populations 1.22078 0.94304 1.03073 1.01713 1.20888 0.94308 0.96455 0.84126 0.92304 1.21736 0.93684 1.02370 0.96827 1.21585 0.96290 0.99569 0.97516 1.20865 0.83092 0.97535 0.96197 1.42643 1.02554 1.65884 1.28166 1.19654 0.89974 1.26266 1.01843 0.90613 1.25578 0.97545 1.02459 1.01357 1.69812 1.07060 1.48801 1.36423 0.85149 0.77861 0.77600 0.79212 1.21118 1.22345 1.19515 1.45955 1.66616 1.14714 1.08703 1.20689 0.76963 0.86837 0.85020 1.90734 1.51164 1.18107 1.85527 1.20853 1.04664 0.95729 0.90178 0.82164 1.21657 0.81859 0.93574 1.03413 1.45576 1.11212 1.31618 1.48266 1.18478 0.88165 0.80549 0.77797 1.90756 1.32596 1.70291 1.52847 1.19767 0.93762 1.01460 1.00449 1.21332 0.99004 0.93802 0.95631 1.21482 0.92068 1.00032 1.01030 1.21738 0.99485 0.96002 0.93621 1.21301 0.97861 0.96639 0.98379 1.19549 0.92939 0.96822 0.94406 0.90381 0.90803 0.94698 0.89684 0.88854 0.91577 0.93924 0.96709 0.95352 0.79605 0.94007 0.74649 0.87405 0.85208 0.74877 0.85381 0.82772 0.82698 0.83630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.66 9.48 71.98 0.68 -1.97 16 2 C 0.15 2.86 2.57 44.99 0.12 2.98 16 3 H 0.06 1.54 7.58 -2.39 -0.02 1.52 16 4 C -0.11 -2.02 4.75 30.60 0.15 -1.88 16 5 C -0.11 -3.09 5.22 30.60 0.16 -2.93 16 6 C 0.15 5.46 6.26 86.38 0.54 6.00 16 7 N -0.75 -37.14 5.60 -343.46 -1.92 -39.06 16 8 C -0.25 -13.47 9.99 84.03 0.84 -12.63 16 9 H 0.08 3.97 7.83 -2.91 -0.02 3.95 16 10 C -0.08 -4.37 5.50 84.86 0.47 -3.91 16 11 N -0.97 -58.57 13.06 21.65 0.28 -58.29 16 12 Si 0.97 45.20 29.55 68.60 2.03 47.23 16 13 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 14 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 15 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 16 N -0.71 -11.43 4.35 -442.54 -1.92 -13.36 16 17 C 0.52 10.91 6.98 87.66 0.61 11.52 16 18 O -0.58 -18.33 15.69 -3.03 -0.05 -18.38 16 19 C -0.09 -1.32 2.73 -12.43 -0.03 -1.35 16 20 H 0.16 1.30 8.07 -2.38 -0.02 1.28 16 21 C 0.12 1.03 6.37 86.33 0.55 1.58 16 22 N -0.71 -11.37 5.43 -467.69 -2.54 -13.91 16 23 C 0.56 14.18 7.81 86.81 0.68 14.86 16 24 O -0.58 -19.10 17.37 -3.86 -0.07 -19.17 16 25 C -0.15 -3.61 5.80 -20.15 -0.12 -3.72 16 26 C -0.08 -1.75 9.64 22.49 0.22 -1.53 16 27 C -0.13 -2.18 10.04 22.26 0.22 -1.95 16 28 C -0.09 -1.44 10.04 22.34 0.22 -1.21 16 29 C -0.12 -2.21 9.71 22.21 0.22 -2.00 16 30 C -0.04 -0.71 4.17 -19.66 -0.08 -0.80 16 31 H 0.08 1.02 8.14 -2.38 -0.02 1.00 16 32 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.03 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.07 1.76 7.75 -2.39 -0.02 1.74 16 37 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.01 0.56 8.14 -2.38 -0.02 0.54 16 39 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.37 19.70 7.67 -92.71 -0.71 18.99 16 41 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 42 H 0.42 3.98 7.91 -92.71 -0.73 3.24 16 43 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 44 H 0.13 0.26 7.28 -2.39 -0.02 0.24 16 45 H 0.41 5.36 8.92 -92.70 -0.83 4.53 16 46 H 0.13 2.86 7.78 -2.91 -0.02 2.84 16 47 H 0.15 1.71 8.06 -2.91 -0.02 1.69 16 48 H 0.16 1.58 8.06 -2.91 -0.02 1.55 16 49 H 0.15 2.08 8.06 -2.91 -0.02 2.06 16 Total: -1.00 -83.74 405.97 -0.04 -83.78 By element: Atomic # 1 Polarization: 31.38 SS G_CDS: -1.29 Total: 30.09 kcal Atomic # 6 Polarization: -4.37 SS G_CDS: 5.44 Total: 1.06 kcal Atomic # 7 Polarization: -118.51 SS G_CDS: -6.10 Total: -124.61 kcal Atomic # 8 Polarization: -37.44 SS G_CDS: -0.11 Total: -37.55 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.23 kcal Total: -83.74 -0.04 -83.78 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717670334.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.171 kcal (2) G-P(sol) polarization free energy of solvation -83.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds