Wall clock time and date at job start Wed Apr 1 2020 03:54:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.47058 * 2 1 4 4 N 1.46499 * 109.47014 * 120.00332 * 2 1 3 5 5 C 1.34777 * 119.99665 * 275.27733 * 4 2 1 6 6 O 1.21553 * 120.00289 * 359.72074 * 5 4 2 7 7 C 1.47846 * 119.99557 * 179.72375 * 5 4 2 8 8 C 1.39575 * 120.14570 * 359.72055 * 7 5 4 9 9 C 1.37955 * 119.85022 * 179.78726 * 8 7 5 10 10 C 1.38362 * 120.14738 * 0.49095 * 9 8 7 11 11 C 1.38361 * 120.29120 * 359.74322 * 10 9 8 12 12 C 1.37957 * 120.14182 * 0.02562 * 11 10 9 13 13 C 1.50696 * 109.46920 * 240.00333 * 2 1 3 14 14 O 1.21283 * 119.99709 * 240.00208 * 13 2 1 15 15 N 1.34773 * 120.00429 * 59.99960 * 13 2 1 16 16 C 1.46508 * 120.00331 * 179.97438 * 15 13 2 17 17 H 1.08996 * 109.46670 * 35.00217 * 16 15 13 18 18 C 1.53001 * 109.47161 * 275.00424 * 16 15 13 19 19 C 1.52998 * 109.47167 * 155.00343 * 16 15 13 20 20 C 1.53947 * 113.74051 * 278.74283 * 19 16 15 21 21 N 1.47815 * 86.03659 * 222.08415 * 20 19 16 22 22 C 1.36935 * 134.45329 * 204.64420 * 21 20 19 23 23 H 1.08004 * 119.99224 * 179.86621 * 22 21 20 24 24 C 1.38805 * 120.00382 * 359.87008 * 22 21 20 25 25 N 1.31620 * 119.99995 * 359.97438 * 24 22 21 26 26 Si 1.86804 * 120.00010 * 180.02562 * 24 22 21 27 27 H 1.48491 * 109.47156 * 359.97438 * 26 24 22 28 28 H 1.48504 * 109.47113 * 119.99647 * 26 24 22 29 29 H 1.48501 * 109.47141 * 239.99525 * 26 24 22 30 30 C 1.47582 * 91.04781 * 24.54777 * 21 20 19 31 31 H 1.08995 * 109.47066 * 300.00185 * 1 2 3 32 32 H 1.09005 * 109.46722 * 59.99817 * 1 2 3 33 33 H 1.09000 * 109.47169 * 179.97438 * 1 2 3 34 34 H 0.97001 * 119.99790 * 94.99446 * 4 2 1 35 35 H 1.08001 * 120.07522 * 0.02562 * 8 7 5 36 36 H 1.08007 * 119.92736 * 180.22839 * 9 8 7 37 37 H 1.08004 * 119.85306 * 179.71843 * 10 9 8 38 38 H 1.07995 * 119.92745 * 180.02562 * 11 10 9 39 39 H 1.08008 * 120.06811 * 179.97438 * 12 11 10 40 40 H 0.96998 * 120.00119 * 0.02562 * 15 13 2 41 41 H 1.08997 * 109.47255 * 59.99923 * 18 16 15 42 42 H 1.08990 * 109.46944 * 179.97438 * 18 16 15 43 43 H 1.09004 * 109.47062 * 300.00132 * 18 16 15 44 44 H 1.09003 * 112.94645 * 50.32990 * 19 16 15 45 45 H 1.08998 * 113.76972 * 336.34885 * 20 19 16 46 46 H 1.09008 * 113.76944 * 107.74805 * 20 19 16 47 47 H 0.97007 * 120.00007 * 180.02562 * 25 24 22 48 48 H 1.08999 * 113.76829 * 221.14799 * 30 21 20 49 49 H 1.09002 * 113.86507 * 89.76884 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1418 -0.0197 2.3585 6 8 1.8527 1.1597 2.4131 7 6 2.6288 -0.7183 3.5671 8 6 2.9560 -2.0739 3.5091 9 6 3.4140 -2.7186 4.6395 10 6 3.5396 -2.0269 5.8312 11 6 3.2123 -0.6841 5.8966 12 6 2.7576 -0.0264 4.7724 13 6 2.0324 -0.7103 -1.2305 14 8 2.7296 -1.6965 -1.1192 15 7 1.7068 -0.2499 -2.4546 16 6 2.1956 -0.9402 -3.6508 17 1 2.2326 -2.0129 -3.4616 18 6 3.5980 -0.4342 -3.9944 19 6 1.2516 -0.6611 -4.8221 20 6 -0.0061 -1.5488 -4.8296 21 7 0.2105 -1.6664 -6.2870 22 6 -0.5996 -1.9317 -7.3586 23 1 -0.1844 -1.9606 -8.3553 24 6 -1.9543 -2.1633 -7.1641 25 7 -2.4602 -2.1284 -5.9495 26 14 -3.0593 -2.5259 -8.6260 27 1 -2.2526 -2.5085 -9.8726 28 1 -3.6810 -3.8639 -8.4568 29 1 -4.1229 -1.4930 -8.7108 30 6 1.6492 -1.3808 -6.1236 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 2.2490 -1.6319 1.1525 35 1 2.8546 -2.6159 2.5805 36 1 3.6712 -3.7667 4.5952 37 1 3.8944 -2.5374 6.7144 38 1 3.3129 -0.1499 6.8297 39 1 2.5020 1.0217 4.8249 40 1 1.1494 0.5390 -2.5436 41 1 4.2705 -0.6330 -3.1599 42 1 3.9618 -0.9481 -4.8840 43 1 3.5610 0.6387 -4.1835 44 1 1.0405 0.4001 -4.9543 45 1 0.1158 -2.4880 -4.2901 46 1 -0.9199 -1.0182 -4.5615 47 1 -3.4069 -2.2906 -5.8135 48 1 2.0547 -0.7166 -6.8867 49 1 2.2600 -2.2696 -5.9651 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725262549.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:54:40 Heat of formation + Delta-G solvation = 5.486101 kcal Electronic energy + Delta-G solvation = -29490.728781 eV Core-core repulsion = 25419.431375 eV Total energy + Delta-G solvation = -4071.297406 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.76517 -39.83550 -38.58908 -38.03245 -35.30516 -34.83365 -32.56672 -32.05525 -31.30834 -30.81459 -29.54868 -27.55074 -25.37855 -24.81471 -24.15009 -23.49497 -22.81176 -21.41178 -20.59994 -20.34032 -19.34553 -18.48909 -17.02489 -16.86853 -16.65819 -16.14120 -15.89516 -15.48824 -15.09994 -14.94118 -14.82197 -14.67415 -14.19358 -13.96298 -13.84856 -13.66234 -13.57971 -13.21000 -12.98336 -12.64341 -12.49416 -12.46203 -12.14870 -12.04550 -11.76125 -11.69815 -11.46777 -11.36500 -11.32681 -10.93711 -10.74822 -10.39757 -10.23405 -10.03179 -9.79995 -9.78879 -9.49996 -9.41876 -9.37553 -9.24292 -8.89947 -8.82340 -6.89688 -5.78980 -3.11064 0.49672 0.98560 2.53226 2.57912 2.68444 3.32326 3.37278 3.42690 3.45143 3.54708 4.33119 4.42927 4.44538 4.55534 4.57110 4.75419 4.88769 4.95635 4.99769 5.06046 5.10402 5.23534 5.24581 5.41304 5.45293 5.50540 5.58962 5.61165 5.63000 5.74886 5.90417 5.93028 5.97982 6.00858 6.02015 6.05477 6.09926 6.20163 6.31572 6.36776 6.48852 6.53275 6.61106 6.73990 7.20357 7.24189 7.33173 7.51460 7.53835 7.93177 7.96078 8.17417 9.02773 9.68982 10.57802 11.38177 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.019704 B = 0.001921 C = 0.001865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.661923 B =14574.379133 C =15009.125206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.125 3.875 3 H 0.115 0.885 4 N -0.707 5.707 5 C 0.562 3.438 6 O -0.538 6.538 7 C -0.134 4.134 8 C -0.083 4.083 9 C -0.127 4.127 10 C -0.095 4.095 11 C -0.130 4.130 12 C -0.060 4.060 13 C 0.512 3.488 14 O -0.543 6.543 15 N -0.709 5.709 16 C 0.151 3.849 17 H 0.088 0.912 18 C -0.159 4.159 19 C -0.147 4.147 20 C 0.171 3.829 21 N -0.613 5.613 22 C -0.222 4.222 23 H 0.080 0.920 24 C -0.009 4.009 25 N -0.921 5.921 26 Si 0.911 3.089 27 H -0.279 1.279 28 H -0.291 1.291 29 H -0.290 1.290 30 C 0.130 3.870 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.067 0.933 34 H 0.410 0.590 35 H 0.129 0.871 36 H 0.130 0.870 37 H 0.127 0.873 38 H 0.129 0.871 39 H 0.136 0.864 40 H 0.402 0.598 41 H 0.053 0.947 42 H 0.068 0.932 43 H 0.055 0.945 44 H 0.089 0.911 45 H 0.025 0.975 46 H 0.072 0.928 47 H 0.253 0.747 48 H 0.044 0.956 49 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.216 3.722 21.897 25.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.016 3.984 3 H 0.132 0.868 4 N -0.360 5.360 5 C 0.350 3.650 6 O -0.416 6.416 7 C -0.137 4.137 8 C -0.102 4.102 9 C -0.145 4.145 10 C -0.113 4.113 11 C -0.148 4.148 12 C -0.079 4.079 13 C 0.297 3.703 14 O -0.420 6.420 15 N -0.359 5.359 16 C 0.046 3.954 17 H 0.106 0.894 18 C -0.217 4.217 19 C -0.167 4.167 20 C 0.046 3.954 21 N -0.339 5.339 22 C -0.350 4.350 23 H 0.098 0.902 24 C -0.205 4.205 25 N -0.569 5.569 26 Si 0.742 3.258 27 H -0.205 1.205 28 H -0.218 1.218 29 H -0.217 1.217 30 C 0.004 3.996 31 H 0.091 0.909 32 H 0.096 0.904 33 H 0.086 0.914 34 H 0.248 0.752 35 H 0.147 0.853 36 H 0.148 0.852 37 H 0.145 0.855 38 H 0.147 0.853 39 H 0.154 0.846 40 H 0.237 0.763 41 H 0.072 0.928 42 H 0.087 0.913 43 H 0.074 0.926 44 H 0.107 0.893 45 H 0.043 0.957 46 H 0.090 0.910 47 H 0.063 0.937 48 H 0.063 0.937 49 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 12.199 3.770 21.776 25.243 hybrid contribution -0.811 -0.496 -0.871 1.290 sum 11.388 3.274 20.905 24.030 Atomic orbital electron populations 1.22154 0.92292 1.03667 1.03853 1.20815 0.96048 0.98003 0.83487 0.86757 1.45667 1.67036 1.14988 1.08344 1.18257 0.77370 0.86410 0.82962 1.90771 1.50326 1.15435 1.85113 1.19912 1.04983 0.94513 0.94266 1.21421 0.96346 0.93368 0.99081 1.21151 1.00231 1.00475 0.92685 1.21410 0.97430 0.94533 0.97969 1.21177 1.00177 0.94896 0.98570 1.21301 0.95041 1.00515 0.91014 1.20450 0.80290 0.84677 0.84909 1.90681 1.38349 1.26368 1.86624 1.46028 1.52717 1.31896 1.05267 1.21142 0.93243 0.97628 0.83385 0.89364 1.22133 0.96494 1.01339 1.01736 1.23834 0.98138 1.00960 0.93783 1.22295 0.94081 0.94236 0.84813 1.46000 1.01893 1.83154 1.02832 1.19074 0.88831 1.41119 0.85930 0.90214 1.24783 0.96728 1.02287 0.96748 1.69824 1.12335 1.55636 1.19071 0.86054 0.80676 0.77595 0.81489 1.20456 1.21765 1.21708 1.22485 0.88436 0.95600 0.93116 0.90857 0.90351 0.91405 0.75201 0.85290 0.85242 0.85548 0.85283 0.84586 0.76314 0.92819 0.91329 0.92637 0.89312 0.95675 0.90996 0.93723 0.93737 0.94777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.66 9.38 37.16 0.35 -1.31 16 2 C 0.12 1.39 2.98 -69.08 -0.21 1.19 16 3 H 0.11 1.24 7.58 -51.93 -0.39 0.85 16 4 N -0.71 -7.86 4.90 -55.88 -0.27 -8.13 16 5 C 0.56 6.73 7.74 -12.33 -0.10 6.63 16 6 O -0.54 -7.82 16.01 5.32 0.09 -7.74 16 7 C -0.13 -1.35 5.87 -104.97 -0.62 -1.96 16 8 C -0.08 -0.70 9.54 -39.19 -0.37 -1.07 16 9 C -0.13 -0.88 10.03 -39.64 -0.40 -1.28 16 10 C -0.10 -0.61 10.04 -39.49 -0.40 -1.00 16 11 C -0.13 -0.91 10.03 -39.64 -0.40 -1.31 16 12 C -0.06 -0.54 9.60 -39.19 -0.38 -0.92 16 13 C 0.51 6.69 7.19 -10.99 -0.08 6.61 16 14 O -0.54 -8.63 15.50 5.55 0.09 -8.54 16 15 N -0.71 -8.84 4.97 -53.80 -0.27 -9.10 16 16 C 0.15 2.18 2.38 -67.93 -0.16 2.02 16 17 H 0.09 1.48 7.41 -51.93 -0.39 1.10 16 18 C -0.16 -2.01 9.31 37.16 0.35 -1.67 16 19 C -0.15 -2.51 3.47 -89.70 -0.31 -2.82 16 20 C 0.17 3.85 7.08 -2.84 -0.02 3.83 16 21 N -0.61 -15.42 3.70 -177.69 -0.66 -16.07 16 22 C -0.22 -6.18 10.70 -15.06 -0.16 -6.35 16 23 H 0.08 2.15 7.83 -52.48 -0.41 1.74 16 24 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 25 N -0.92 -27.06 11.39 55.49 0.63 -26.42 16 26 Si 0.91 22.04 29.55 -169.99 -5.02 17.02 16 27 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 28 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 29 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 30 C 0.13 2.54 7.64 -2.97 -0.02 2.52 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.08 0.72 7.57 -51.93 -0.39 0.33 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.41 4.28 5.82 -40.82 -0.24 4.04 16 35 H 0.13 0.93 6.41 -52.49 -0.34 0.60 16 36 H 0.13 0.63 8.06 -52.48 -0.42 0.21 16 37 H 0.13 0.50 8.06 -52.48 -0.42 0.08 16 38 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 39 H 0.14 1.22 7.65 -52.48 -0.40 0.82 16 40 H 0.40 4.19 8.02 -40.82 -0.33 3.87 16 41 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.07 0.84 7.52 -51.93 -0.39 0.45 16 43 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 45 H 0.03 0.60 7.99 -51.93 -0.41 0.19 16 46 H 0.07 1.79 7.17 -51.92 -0.37 1.41 16 47 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 48 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 49 H 0.03 0.65 8.10 -51.93 -0.42 0.23 16 LS Contribution 406.23 15.07 6.12 6.12 Total: -1.00 -34.30 406.23 -9.74 -44.04 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: -7.42 Total: 6.07 kcal Atomic # 6 Polarization: 5.77 SS G_CDS: -3.02 Total: 2.76 kcal Atomic # 7 Polarization: -59.16 SS G_CDS: -0.57 Total: -59.73 kcal Atomic # 8 Polarization: -16.45 SS G_CDS: 0.17 Total: -16.28 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -34.30 -9.74 -44.04 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725262549.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.525 kcal (2) G-P(sol) polarization free energy of solvation -34.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds