Wall clock time and date at job start Wed Apr 1 2020 03:54:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.47058 * 2 1 4 4 N 1.46499 * 109.47014 * 120.00332 * 2 1 3 5 5 C 1.34777 * 119.99665 * 275.27733 * 4 2 1 6 6 O 1.21553 * 120.00289 * 359.72074 * 5 4 2 7 7 C 1.47846 * 119.99557 * 179.72375 * 5 4 2 8 8 C 1.39575 * 120.14570 * 359.72055 * 7 5 4 9 9 C 1.37955 * 119.85022 * 179.78726 * 8 7 5 10 10 C 1.38362 * 120.14738 * 0.49095 * 9 8 7 11 11 C 1.38361 * 120.29120 * 359.74322 * 10 9 8 12 12 C 1.37957 * 120.14182 * 0.02562 * 11 10 9 13 13 C 1.50696 * 109.46920 * 240.00333 * 2 1 3 14 14 O 1.21283 * 119.99709 * 240.00208 * 13 2 1 15 15 N 1.34773 * 120.00429 * 59.99960 * 13 2 1 16 16 C 1.46508 * 120.00331 * 179.97438 * 15 13 2 17 17 H 1.08996 * 109.46670 * 35.00217 * 16 15 13 18 18 C 1.53001 * 109.47161 * 275.00424 * 16 15 13 19 19 C 1.52998 * 109.47167 * 155.00343 * 16 15 13 20 20 C 1.53947 * 113.74051 * 278.74283 * 19 16 15 21 21 N 1.47815 * 86.03659 * 222.08415 * 20 19 16 22 22 C 1.36935 * 134.45329 * 204.64420 * 21 20 19 23 23 H 1.08004 * 119.99224 * 179.86621 * 22 21 20 24 24 C 1.38805 * 120.00382 * 359.87008 * 22 21 20 25 25 N 1.31620 * 119.99995 * 359.97438 * 24 22 21 26 26 Si 1.86804 * 120.00010 * 180.02562 * 24 22 21 27 27 H 1.48491 * 109.47156 * 359.97438 * 26 24 22 28 28 H 1.48504 * 109.47113 * 119.99647 * 26 24 22 29 29 H 1.48501 * 109.47141 * 239.99525 * 26 24 22 30 30 C 1.47582 * 91.04781 * 24.54777 * 21 20 19 31 31 H 1.08995 * 109.47066 * 300.00185 * 1 2 3 32 32 H 1.09005 * 109.46722 * 59.99817 * 1 2 3 33 33 H 1.09000 * 109.47169 * 179.97438 * 1 2 3 34 34 H 0.97001 * 119.99790 * 94.99446 * 4 2 1 35 35 H 1.08001 * 120.07522 * 0.02562 * 8 7 5 36 36 H 1.08007 * 119.92736 * 180.22839 * 9 8 7 37 37 H 1.08004 * 119.85306 * 179.71843 * 10 9 8 38 38 H 1.07995 * 119.92745 * 180.02562 * 11 10 9 39 39 H 1.08008 * 120.06811 * 179.97438 * 12 11 10 40 40 H 0.96998 * 120.00119 * 0.02562 * 15 13 2 41 41 H 1.08997 * 109.47255 * 59.99923 * 18 16 15 42 42 H 1.08990 * 109.46944 * 179.97438 * 18 16 15 43 43 H 1.09004 * 109.47062 * 300.00132 * 18 16 15 44 44 H 1.09003 * 112.94645 * 50.32990 * 19 16 15 45 45 H 1.08998 * 113.76972 * 336.34885 * 20 19 16 46 46 H 1.09008 * 113.76944 * 107.74805 * 20 19 16 47 47 H 0.97007 * 120.00007 * 180.02562 * 25 24 22 48 48 H 1.08999 * 113.76829 * 221.14799 * 30 21 20 49 49 H 1.09002 * 113.86507 * 89.76884 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1418 -0.0197 2.3585 6 8 1.8527 1.1597 2.4131 7 6 2.6288 -0.7183 3.5671 8 6 2.9560 -2.0739 3.5091 9 6 3.4140 -2.7186 4.6395 10 6 3.5396 -2.0269 5.8312 11 6 3.2123 -0.6841 5.8966 12 6 2.7576 -0.0264 4.7724 13 6 2.0324 -0.7103 -1.2305 14 8 2.7296 -1.6965 -1.1192 15 7 1.7068 -0.2499 -2.4546 16 6 2.1956 -0.9402 -3.6508 17 1 2.2326 -2.0129 -3.4616 18 6 3.5980 -0.4342 -3.9944 19 6 1.2516 -0.6611 -4.8221 20 6 -0.0061 -1.5488 -4.8296 21 7 0.2105 -1.6664 -6.2870 22 6 -0.5996 -1.9317 -7.3586 23 1 -0.1844 -1.9606 -8.3553 24 6 -1.9543 -2.1633 -7.1641 25 7 -2.4602 -2.1284 -5.9495 26 14 -3.0593 -2.5259 -8.6260 27 1 -2.2526 -2.5085 -9.8726 28 1 -3.6810 -3.8639 -8.4568 29 1 -4.1229 -1.4930 -8.7108 30 6 1.6492 -1.3808 -6.1236 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 2.2490 -1.6319 1.1525 35 1 2.8546 -2.6159 2.5805 36 1 3.6712 -3.7667 4.5952 37 1 3.8944 -2.5374 6.7144 38 1 3.3129 -0.1499 6.8297 39 1 2.5020 1.0217 4.8249 40 1 1.1494 0.5390 -2.5436 41 1 4.2705 -0.6330 -3.1599 42 1 3.9618 -0.9481 -4.8840 43 1 3.5610 0.6387 -4.1835 44 1 1.0405 0.4001 -4.9543 45 1 0.1158 -2.4880 -4.2901 46 1 -0.9199 -1.0182 -4.5615 47 1 -3.4069 -2.2906 -5.8135 48 1 2.0547 -0.7166 -6.8867 49 1 2.2600 -2.2696 -5.9651 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725262549.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:54:39 Heat of formation + Delta-G solvation = -17.120171 kcal Electronic energy + Delta-G solvation = -29491.709063 eV Core-core repulsion = 25419.431375 eV Total energy + Delta-G solvation = -4072.277688 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.71917 -40.85063 -39.77610 -39.12376 -36.43099 -36.02167 -34.22693 -33.17892 -31.93136 -31.80736 -30.54076 -29.33040 -26.71333 -26.06286 -25.58832 -24.53701 -23.46650 -22.75300 -21.53940 -21.40269 -20.71016 -19.47147 -18.75884 -17.90712 -17.72628 -17.17811 -16.90935 -16.74311 -16.36456 -15.99429 -15.82689 -15.70198 -15.45078 -15.22590 -14.79588 -14.75580 -14.62721 -14.31118 -14.10039 -13.84140 -13.53772 -13.39254 -13.33834 -13.22819 -13.07550 -12.91908 -12.72700 -12.70227 -12.59273 -12.50527 -12.02602 -11.96198 -11.74899 -11.48739 -11.25210 -11.16951 -10.93794 -10.85667 -10.38240 -10.07682 -9.95830 -9.91183 -8.91013 -7.90714 -5.23609 -0.16275 0.41107 1.45280 1.45843 1.47749 1.56191 1.68441 1.81685 2.32837 2.47111 2.89342 3.30307 3.37083 3.48605 3.64671 3.79386 3.89880 3.95081 3.99111 4.01745 4.06275 4.24768 4.31247 4.46591 4.48413 4.51913 4.59697 4.61664 4.72578 4.75769 4.83258 4.85882 4.87342 5.01678 5.05647 5.08779 5.14606 5.20314 5.27077 5.34284 5.34506 5.44141 5.46540 5.50746 5.56735 5.67692 5.94442 5.94764 6.35573 6.47002 6.92734 7.02620 7.12326 7.61309 8.57027 9.26213 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.019704 B = 0.001921 C = 0.001865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.661923 B =14574.379133 C =15009.125206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.131 3.869 3 H 0.121 0.879 4 N -0.704 5.704 5 C 0.561 3.439 6 O -0.571 6.571 7 C -0.158 4.158 8 C -0.091 4.091 9 C -0.131 4.131 10 C -0.089 4.089 11 C -0.130 4.130 12 C -0.075 4.075 13 C 0.515 3.485 14 O -0.571 6.571 15 N -0.702 5.702 16 C 0.161 3.839 17 H 0.065 0.935 18 C -0.151 4.151 19 C -0.109 4.109 20 C 0.168 3.832 21 N -0.645 5.645 22 C -0.232 4.232 23 H 0.084 0.916 24 C -0.069 4.069 25 N -0.953 5.953 26 Si 0.977 3.023 27 H -0.265 1.265 28 H -0.295 1.295 29 H -0.291 1.291 30 C 0.129 3.871 31 H 0.071 0.929 32 H 0.090 0.910 33 H 0.060 0.940 34 H 0.413 0.587 35 H 0.134 0.866 36 H 0.153 0.847 37 H 0.157 0.843 38 H 0.153 0.847 39 H 0.128 0.872 40 H 0.414 0.586 41 H 0.050 0.950 42 H 0.074 0.926 43 H 0.073 0.927 44 H 0.105 0.895 45 H 0.005 0.995 46 H 0.043 0.957 47 H 0.247 0.753 48 H 0.063 0.937 49 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.684 3.892 22.459 26.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.022 3.978 3 H 0.139 0.861 4 N -0.357 5.357 5 C 0.350 3.650 6 O -0.452 6.452 7 C -0.161 4.161 8 C -0.110 4.110 9 C -0.148 4.148 10 C -0.107 4.107 11 C -0.148 4.148 12 C -0.094 4.094 13 C 0.301 3.699 14 O -0.450 6.450 15 N -0.353 5.353 16 C 0.055 3.945 17 H 0.083 0.917 18 C -0.209 4.209 19 C -0.129 4.129 20 C 0.043 3.957 21 N -0.372 5.372 22 C -0.361 4.361 23 H 0.102 0.898 24 C -0.262 4.262 25 N -0.602 5.602 26 Si 0.805 3.195 27 H -0.189 1.189 28 H -0.223 1.223 29 H -0.218 1.218 30 C 0.004 3.996 31 H 0.090 0.910 32 H 0.109 0.891 33 H 0.079 0.921 34 H 0.251 0.749 35 H 0.152 0.848 36 H 0.170 0.830 37 H 0.175 0.825 38 H 0.171 0.829 39 H 0.146 0.854 40 H 0.251 0.749 41 H 0.069 0.931 42 H 0.093 0.907 43 H 0.092 0.908 44 H 0.123 0.877 45 H 0.023 0.977 46 H 0.062 0.938 47 H 0.056 0.944 48 H 0.082 0.918 49 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 13.700 3.950 22.325 26.490 hybrid contribution -1.202 -0.604 -0.990 1.671 sum 12.498 3.346 21.335 24.951 Atomic orbital electron populations 1.22118 0.91611 1.03325 1.04371 1.20786 0.96414 0.97931 0.82642 0.86147 1.45682 1.66739 1.15098 1.08217 1.18614 0.76690 0.86099 0.83548 1.90739 1.52022 1.16775 1.85656 1.19895 1.06929 0.95409 0.93821 1.21558 0.96529 0.92767 1.00105 1.21494 0.99384 1.01631 0.92323 1.21820 0.95876 0.94246 0.98783 1.21482 0.99172 0.95445 0.98687 1.21402 0.95956 1.00453 0.91623 1.20698 0.79674 0.84197 0.85348 1.90669 1.39687 1.27658 1.87019 1.45910 1.52736 1.32046 1.04647 1.20868 0.93890 0.96705 0.82992 0.91720 1.22055 0.94496 1.02472 1.01847 1.23445 0.95206 1.00458 0.93796 1.22187 0.95512 0.94221 0.83784 1.46438 1.04461 1.83147 1.03134 1.19475 0.89578 1.39923 0.87121 0.89834 1.25617 0.98246 1.03064 0.99304 1.70007 1.12134 1.57142 1.20962 0.85028 0.78668 0.76742 0.79013 1.18887 1.22264 1.21774 1.22685 0.85826 0.96426 0.94633 0.91035 0.89128 0.92137 0.74850 0.84834 0.82964 0.82497 0.82888 0.85396 0.74885 0.93123 0.90701 0.90801 0.87671 0.97734 0.93849 0.94357 0.91830 0.93830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.21 9.38 71.98 0.68 -2.53 16 2 C 0.13 2.89 2.98 44.25 0.13 3.03 16 3 H 0.12 2.57 7.58 -2.39 -0.02 2.55 16 4 N -0.70 -15.90 4.90 -448.97 -2.20 -18.11 16 5 C 0.56 13.80 7.74 86.79 0.67 14.48 16 6 O -0.57 -17.13 16.01 -3.88 -0.06 -17.19 16 7 C -0.16 -3.21 5.87 -20.09 -0.12 -3.33 16 8 C -0.09 -1.47 9.54 22.53 0.21 -1.25 16 9 C -0.13 -1.55 10.03 22.23 0.22 -1.33 16 10 C -0.09 -0.90 10.04 22.33 0.22 -0.67 16 11 C -0.13 -1.59 10.03 22.23 0.22 -1.37 16 12 C -0.08 -1.36 9.60 22.53 0.22 -1.15 16 13 C 0.52 13.26 7.19 87.66 0.63 13.89 16 14 O -0.57 -18.10 15.50 -3.04 -0.05 -18.15 16 15 N -0.70 -16.79 4.97 -442.53 -2.20 -18.99 16 16 C 0.16 4.45 2.38 44.99 0.11 4.56 16 17 H 0.06 2.16 7.41 -2.39 -0.02 2.14 16 18 C -0.15 -3.45 9.31 71.98 0.67 -2.78 16 19 C -0.11 -3.59 3.47 -10.14 -0.04 -3.63 16 20 C 0.17 7.72 7.08 86.44 0.61 8.34 16 21 N -0.65 -32.49 3.70 -716.09 -2.65 -35.14 16 22 C -0.23 -12.98 10.70 84.03 0.90 -12.08 16 23 H 0.08 4.46 7.83 -2.91 -0.02 4.43 16 24 C -0.07 -3.96 5.50 84.86 0.47 -3.49 16 25 N -0.95 -57.36 11.39 21.65 0.25 -57.12 16 26 Si 0.98 45.71 29.55 68.60 2.03 47.73 16 27 H -0.26 -11.58 7.11 99.48 0.71 -10.88 16 28 H -0.30 -13.92 7.11 99.48 0.71 -13.22 16 29 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 30 C 0.13 4.85 7.64 86.48 0.66 5.51 16 31 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.09 1.62 7.57 -2.38 -0.02 1.60 16 33 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.41 8.80 5.82 -92.71 -0.54 8.26 16 35 H 0.13 1.91 6.41 -2.91 -0.02 1.89 16 36 H 0.15 1.06 8.06 -2.91 -0.02 1.04 16 37 H 0.16 0.61 8.06 -2.91 -0.02 0.59 16 38 H 0.15 1.06 8.06 -2.91 -0.02 1.03 16 39 H 0.13 2.41 7.65 -2.91 -0.02 2.39 16 40 H 0.41 8.00 8.02 -92.71 -0.74 7.26 16 41 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 42 H 0.07 1.64 7.52 -2.39 -0.02 1.62 16 43 H 0.07 1.45 8.14 -2.38 -0.02 1.43 16 44 H 0.11 3.18 8.14 -2.39 -0.02 3.16 16 45 H 0.00 0.24 7.99 -2.39 -0.02 0.22 16 46 H 0.04 2.22 7.17 -2.38 -0.02 2.21 16 47 H 0.25 14.47 8.31 -92.70 -0.77 13.70 16 48 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 49 H 0.04 1.59 8.10 -2.39 -0.02 1.57 16 Total: -1.00 -75.70 406.23 1.27 -74.43 By element: Atomic # 1 Polarization: 26.66 SS G_CDS: -0.31 Total: 26.35 kcal Atomic # 6 Polarization: 9.72 SS G_CDS: 6.47 Total: 16.19 kcal Atomic # 7 Polarization: -122.55 SS G_CDS: -6.81 Total: -129.36 kcal Atomic # 8 Polarization: -35.23 SS G_CDS: -0.11 Total: -35.34 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.73 kcal Total: -75.70 1.27 -74.43 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725262549.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.306 kcal (2) G-P(sol) polarization free energy of solvation -75.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds