Wall clock time and date at job start Wed Apr 1 2020 03:54:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.47105 * 2 1 4 4 N 1.46502 * 109.46724 * 119.99470 * 2 1 3 5 5 C 1.34772 * 120.00245 * 274.99710 * 4 2 1 6 6 O 1.21283 * 119.99987 * 0.02562 * 5 4 2 7 7 C 1.50695 * 120.00397 * 180.02562 * 5 4 2 8 8 H 1.09006 * 109.46988 * 60.00175 * 7 5 4 9 9 C 1.53004 * 109.47289 * 300.00539 * 7 5 4 10 10 N 1.46500 * 109.47810 * 180.02562 * 7 5 4 11 11 C 1.34775 * 120.00363 * 205.00457 * 10 7 5 12 12 O 1.21558 * 119.99638 * 359.97438 * 11 10 7 13 13 C 1.47845 * 120.00168 * 179.97438 * 11 10 7 14 14 C 1.39577 * 120.14185 * 359.71726 * 13 11 10 15 15 C 1.37960 * 119.84826 * 179.79693 * 14 13 11 16 16 C 1.38357 * 120.14621 * 0.48216 * 15 14 13 17 17 C 1.38355 * 120.29066 * 359.74733 * 16 15 14 18 18 C 1.37948 * 120.14947 * 0.02562 * 17 16 15 19 19 C 1.52992 * 109.47255 * 239.99632 * 2 1 3 20 20 C 1.53948 * 113.74198 * 158.74210 * 19 2 1 21 21 N 1.47819 * 86.03563 * 222.08525 * 20 19 2 22 22 C 1.36932 * 134.45393 * 204.64794 * 21 20 19 23 23 H 1.08003 * 119.99797 * 173.34905 * 22 21 20 24 24 C 1.38812 * 120.00251 * 353.34025 * 22 21 20 25 25 N 1.31617 * 120.00068 * 5.07009 * 24 22 21 26 26 Si 1.86796 * 120.00189 * 185.06824 * 24 22 21 27 27 H 1.48499 * 109.47322 * 94.98895 * 26 24 22 28 28 H 1.48499 * 109.47253 * 214.99120 * 26 24 22 29 29 H 1.48502 * 109.47268 * 334.98808 * 26 24 22 30 30 C 1.47582 * 91.05240 * 24.54713 * 21 20 19 31 31 H 1.09002 * 109.46907 * 60.00631 * 1 2 3 32 32 H 1.09001 * 109.47028 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47282 * 300.00176 * 1 2 3 34 34 H 0.97004 * 119.99999 * 95.00856 * 4 2 1 35 35 H 1.08996 * 109.46803 * 299.99738 * 9 7 5 36 36 H 1.08993 * 109.47321 * 179.97438 * 9 7 5 37 37 H 1.08999 * 109.46737 * 59.99585 * 9 7 5 38 38 H 0.97000 * 119.99977 * 24.99529 * 10 7 5 39 39 H 1.07999 * 120.07389 * 0.02562 * 14 13 11 40 40 H 1.08006 * 119.92319 * 180.23344 * 15 14 13 41 41 H 1.08003 * 119.85356 * 179.72575 * 16 15 14 42 42 H 1.08004 * 119.92336 * 179.97438 * 17 16 15 43 43 H 1.08006 * 120.07837 * 179.97438 * 18 17 16 44 44 H 1.08998 * 112.94733 * 290.33357 * 19 2 1 45 45 H 1.08995 * 113.76499 * 336.34611 * 20 19 2 46 46 H 1.09001 * 113.77051 * 107.74530 * 20 19 2 47 47 H 0.96995 * 120.00309 * 180.02562 * 25 24 22 48 48 H 1.08990 * 113.76954 * 221.15524 * 30 21 20 49 49 H 1.09002 * 113.87107 * 89.76653 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.1470 -0.0181 2.3572 6 8 1.8582 1.1586 2.4116 7 6 2.6498 -0.7282 3.5876 8 1 3.6492 -1.1201 3.3980 9 6 1.7062 -1.8825 3.9316 10 7 2.6985 0.2130 4.7092 11 6 3.5460 -0.0036 5.7344 12 8 4.2698 -0.9803 5.7287 13 6 3.5955 0.9465 6.8660 14 6 2.7700 2.0720 6.8728 15 6 2.8181 2.9524 7.9339 16 6 3.6893 2.7270 8.9848 17 6 4.5136 1.6159 8.9819 18 6 4.4721 0.7252 7.9294 19 6 2.0401 -0.7213 -1.2491 20 6 3.4849 -0.3521 -1.6315 21 7 2.9979 -0.3178 -3.0268 22 6 3.5876 -0.4759 -4.2525 23 1 2.9791 -0.5092 -5.1442 24 6 4.9674 -0.5933 -4.3490 25 7 5.7007 -0.6529 -3.2577 26 14 5.7834 -0.6666 -6.0277 27 1 6.2266 0.6946 -6.4225 28 1 6.9589 -1.5720 -5.9675 29 1 4.8133 -1.1808 -7.0276 30 6 1.6214 -0.0473 -2.5684 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5139 0.8900 34 1 2.2491 -1.6317 1.1528 35 1 0.7070 -1.4907 4.1211 36 1 2.0701 -2.3964 4.8213 37 1 1.6697 -2.5829 3.0972 38 1 2.1208 0.9921 4.7139 39 1 2.0925 2.2512 6.0511 40 1 2.1772 3.8217 7.9422 41 1 3.7262 3.4217 9.8110 42 1 5.1917 1.4459 9.8052 43 1 5.1165 -0.1417 7.9281 44 1 1.8529 -1.7948 -1.2261 45 1 3.8047 0.6190 -1.2539 46 1 4.2072 -1.1448 -1.4364 47 1 6.6648 -0.7346 -3.3251 48 1 0.8588 -0.5971 -3.1198 49 1 1.3909 1.0131 -2.4662 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725262552.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:54:44 Heat of formation + Delta-G solvation = 5.658568 kcal Electronic energy + Delta-G solvation = -29476.704418 eV Core-core repulsion = 25405.414491 eV Total energy + Delta-G solvation = -4071.289928 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.76024 -39.83174 -38.57933 -38.02321 -35.30314 -34.83960 -32.56773 -32.05140 -31.29742 -30.80847 -29.60214 -27.54252 -25.37643 -24.82471 -24.13728 -23.51069 -22.80248 -21.41399 -20.61797 -20.31243 -19.34940 -18.48462 -17.02826 -16.88307 -16.64712 -16.11888 -15.80181 -15.49069 -15.19493 -14.90180 -14.83401 -14.77025 -14.10513 -13.92204 -13.84680 -13.67163 -13.54439 -13.29063 -13.00272 -12.67727 -12.56074 -12.46515 -12.15286 -12.03730 -11.83575 -11.68710 -11.45762 -11.36522 -11.31956 -10.91667 -10.74618 -10.39420 -10.21798 -10.03572 -9.80721 -9.79657 -9.48535 -9.40470 -9.36403 -9.23329 -8.90588 -8.79838 -6.87429 -5.78849 -3.10252 0.50968 0.99695 2.52762 2.59857 2.68784 3.31847 3.38840 3.43850 3.46039 3.55781 4.33637 4.44336 4.45249 4.55530 4.56892 4.75981 4.83193 4.94796 5.00405 5.06439 5.11518 5.22783 5.24658 5.34805 5.41331 5.50829 5.54505 5.60639 5.61430 5.74421 5.86438 5.90303 5.94138 5.98313 6.02232 6.06512 6.09150 6.20180 6.31468 6.36428 6.49993 6.54028 6.62778 6.74380 7.21855 7.24553 7.33042 7.51533 7.55373 7.94719 7.96861 8.17387 9.03616 9.69984 10.59679 11.38830 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.015749 B = 0.002008 C = 0.001904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.493085 B =13940.441304 C =14705.329750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.150 3.850 3 H 0.088 0.912 4 N -0.709 5.709 5 C 0.512 3.488 6 O -0.542 6.542 7 C 0.123 3.877 8 H 0.118 0.882 9 C -0.158 4.158 10 N -0.707 5.707 11 C 0.562 3.438 12 O -0.536 6.536 13 C -0.133 4.133 14 C -0.084 4.084 15 C -0.128 4.128 16 C -0.095 4.095 17 C -0.130 4.130 18 C -0.059 4.059 19 C -0.148 4.148 20 C 0.173 3.827 21 N -0.613 5.613 22 C -0.225 4.225 23 H 0.080 0.920 24 C -0.007 4.007 25 N -0.919 5.919 26 Si 0.910 3.090 27 H -0.289 1.289 28 H -0.291 1.291 29 H -0.280 1.280 30 C 0.130 3.870 31 H 0.068 0.932 32 H 0.054 0.946 33 H 0.053 0.947 34 H 0.402 0.598 35 H 0.063 0.937 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.409 0.591 39 H 0.129 0.871 40 H 0.129 0.871 41 H 0.126 0.874 42 H 0.129 0.871 43 H 0.137 0.863 44 H 0.088 0.912 45 H 0.027 0.973 46 H 0.067 0.933 47 H 0.254 0.746 48 H 0.044 0.956 49 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.799 2.276 24.663 26.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.046 3.954 3 H 0.106 0.894 4 N -0.359 5.359 5 C 0.297 3.703 6 O -0.420 6.420 7 C 0.014 3.986 8 H 0.136 0.864 9 C -0.217 4.217 10 N -0.361 5.361 11 C 0.349 3.651 12 O -0.414 6.414 13 C -0.136 4.136 14 C -0.102 4.102 15 C -0.146 4.146 16 C -0.114 4.114 17 C -0.148 4.148 18 C -0.078 4.078 19 C -0.168 4.168 20 C 0.048 3.952 21 N -0.339 5.339 22 C -0.352 4.352 23 H 0.098 0.902 24 C -0.204 4.204 25 N -0.566 5.566 26 Si 0.740 3.260 27 H -0.216 1.216 28 H -0.217 1.217 29 H -0.205 1.205 30 C 0.004 3.996 31 H 0.087 0.913 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.237 0.763 35 H 0.082 0.918 36 H 0.092 0.908 37 H 0.094 0.906 38 H 0.247 0.753 39 H 0.147 0.853 40 H 0.147 0.853 41 H 0.144 0.856 42 H 0.147 0.853 43 H 0.155 0.845 44 H 0.107 0.893 45 H 0.045 0.955 46 H 0.086 0.914 47 H 0.064 0.936 48 H 0.062 0.938 49 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -9.226 2.366 24.407 26.199 hybrid contribution 0.417 0.099 -1.013 1.100 sum -8.809 2.464 23.394 25.119 Atomic orbital electron populations 1.22125 0.95535 1.01808 1.02114 1.21143 0.93526 0.97625 0.83142 0.89374 1.46026 1.66241 1.14239 1.09400 1.20436 0.77820 0.87295 0.84744 1.90681 1.50625 1.15723 1.84962 1.20821 1.02692 0.90015 0.85035 0.86428 1.22125 0.99132 0.96965 1.03440 1.45641 1.42117 1.28404 1.19914 1.18266 0.79417 0.85266 0.82106 1.90784 1.41895 1.29652 1.79029 1.19911 1.00661 0.96758 0.96296 1.21406 0.97368 0.93161 0.98312 1.21141 0.99627 0.99745 0.94073 1.21404 0.94817 0.96986 0.98144 1.21178 0.99944 0.94887 0.98767 1.21312 0.95929 0.98859 0.91728 1.23853 1.01000 0.99689 0.92248 1.22237 0.91167 0.98452 0.83347 1.45977 1.03493 1.82419 1.01973 1.19021 0.89838 1.42984 0.83394 0.90219 1.24830 0.95945 1.02376 0.97264 1.69826 1.04891 1.55850 1.25998 0.86136 0.79114 0.77455 0.83305 1.21625 1.21698 1.20543 1.22488 0.89773 0.96583 0.90795 0.91341 0.92655 0.92828 0.76328 0.91785 0.90796 0.90627 0.75292 0.85347 0.85279 0.85553 0.85263 0.84540 0.89326 0.95476 0.91424 0.93609 0.93781 0.94802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.93 9.31 37.16 0.35 -1.59 16 2 C 0.15 2.17 2.38 -67.93 -0.16 2.01 16 3 H 0.09 1.50 7.42 -51.93 -0.39 1.12 16 4 N -0.71 -8.83 4.97 -53.81 -0.27 -9.10 16 5 C 0.51 6.70 7.19 -10.99 -0.08 6.62 16 6 O -0.54 -8.64 15.50 5.56 0.09 -8.55 16 7 C 0.12 1.37 2.98 -69.08 -0.21 1.16 16 8 H 0.12 1.41 7.58 -51.93 -0.39 1.02 16 9 C -0.16 -1.38 9.38 37.16 0.35 -1.03 16 10 N -0.71 -7.86 4.90 -55.88 -0.27 -8.13 16 11 C 0.56 6.88 7.74 -12.33 -0.10 6.79 16 12 O -0.54 -8.07 16.01 5.32 0.09 -7.98 16 13 C -0.13 -1.37 5.87 -104.97 -0.62 -1.99 16 14 C -0.08 -0.70 9.54 -39.18 -0.37 -1.08 16 15 C -0.13 -0.89 10.03 -39.64 -0.40 -1.29 16 16 C -0.10 -0.62 10.04 -39.49 -0.40 -1.02 16 17 C -0.13 -0.94 10.03 -39.64 -0.40 -1.33 16 18 C -0.06 -0.56 9.60 -39.19 -0.38 -0.93 16 19 C -0.15 -2.54 3.47 -89.69 -0.31 -2.85 16 20 C 0.17 3.98 6.99 -2.83 -0.02 3.96 16 21 N -0.61 -15.58 3.70 -177.68 -0.66 -16.24 16 22 C -0.22 -6.32 10.70 -15.06 -0.16 -6.48 16 23 H 0.08 2.16 7.83 -52.48 -0.41 1.75 16 24 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 25 N -0.92 -27.45 11.51 55.49 0.64 -26.81 16 26 Si 0.91 22.24 29.56 -169.99 -5.02 17.22 16 27 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 28 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 29 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 30 C 0.13 2.56 7.64 -2.96 -0.02 2.53 16 31 H 0.07 0.83 7.52 -51.93 -0.39 0.44 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.40 4.18 8.02 -40.82 -0.33 3.85 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.54 7.56 -51.93 -0.39 0.15 16 38 H 0.41 4.16 5.83 -40.82 -0.24 3.92 16 39 H 0.13 0.91 6.41 -52.49 -0.34 0.57 16 40 H 0.13 0.62 8.06 -52.48 -0.42 0.20 16 41 H 0.13 0.51 8.06 -52.48 -0.42 0.09 16 42 H 0.13 0.64 8.06 -52.48 -0.42 0.22 16 43 H 0.14 1.28 7.65 -52.48 -0.40 0.88 16 44 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 45 H 0.03 0.67 7.99 -51.93 -0.41 0.25 16 46 H 0.07 1.71 7.37 -51.93 -0.38 1.33 16 47 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 48 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 49 H 0.03 0.65 8.10 -51.93 -0.42 0.23 16 LS Contribution 406.45 15.07 6.13 6.13 Total: -1.00 -34.95 406.45 -9.74 -44.69 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -7.43 Total: 5.60 kcal Atomic # 6 Polarization: 6.20 SS G_CDS: -3.02 Total: 3.19 kcal Atomic # 7 Polarization: -59.72 SS G_CDS: -0.56 Total: -60.28 kcal Atomic # 8 Polarization: -16.71 SS G_CDS: 0.17 Total: -16.54 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -34.95 -9.74 -44.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725262552.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.344 kcal (2) G-P(sol) polarization free energy of solvation -34.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.686 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds