Wall clock time and date at job start Wed Apr 1 2020 03:54:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.47105 * 2 1 4 4 N 1.46502 * 109.46724 * 119.99470 * 2 1 3 5 5 C 1.34772 * 120.00245 * 274.99710 * 4 2 1 6 6 O 1.21283 * 119.99987 * 0.02562 * 5 4 2 7 7 C 1.50695 * 120.00397 * 180.02562 * 5 4 2 8 8 H 1.09006 * 109.46988 * 60.00175 * 7 5 4 9 9 C 1.53004 * 109.47289 * 300.00539 * 7 5 4 10 10 N 1.46500 * 109.47810 * 180.02562 * 7 5 4 11 11 C 1.34775 * 120.00363 * 205.00457 * 10 7 5 12 12 O 1.21558 * 119.99638 * 359.97438 * 11 10 7 13 13 C 1.47845 * 120.00168 * 179.97438 * 11 10 7 14 14 C 1.39577 * 120.14185 * 359.71726 * 13 11 10 15 15 C 1.37960 * 119.84826 * 179.79693 * 14 13 11 16 16 C 1.38357 * 120.14621 * 0.48216 * 15 14 13 17 17 C 1.38355 * 120.29066 * 359.74733 * 16 15 14 18 18 C 1.37948 * 120.14947 * 0.02562 * 17 16 15 19 19 C 1.52992 * 109.47255 * 239.99632 * 2 1 3 20 20 C 1.53948 * 113.74198 * 158.74210 * 19 2 1 21 21 N 1.47819 * 86.03563 * 222.08525 * 20 19 2 22 22 C 1.36932 * 134.45393 * 204.64794 * 21 20 19 23 23 H 1.08003 * 119.99797 * 173.34905 * 22 21 20 24 24 C 1.38812 * 120.00251 * 353.34025 * 22 21 20 25 25 N 1.31617 * 120.00068 * 5.07009 * 24 22 21 26 26 Si 1.86796 * 120.00189 * 185.06824 * 24 22 21 27 27 H 1.48499 * 109.47322 * 94.98895 * 26 24 22 28 28 H 1.48499 * 109.47253 * 214.99120 * 26 24 22 29 29 H 1.48502 * 109.47268 * 334.98808 * 26 24 22 30 30 C 1.47582 * 91.05240 * 24.54713 * 21 20 19 31 31 H 1.09002 * 109.46907 * 60.00631 * 1 2 3 32 32 H 1.09001 * 109.47028 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47282 * 300.00176 * 1 2 3 34 34 H 0.97004 * 119.99999 * 95.00856 * 4 2 1 35 35 H 1.08996 * 109.46803 * 299.99738 * 9 7 5 36 36 H 1.08993 * 109.47321 * 179.97438 * 9 7 5 37 37 H 1.08999 * 109.46737 * 59.99585 * 9 7 5 38 38 H 0.97000 * 119.99977 * 24.99529 * 10 7 5 39 39 H 1.07999 * 120.07389 * 0.02562 * 14 13 11 40 40 H 1.08006 * 119.92319 * 180.23344 * 15 14 13 41 41 H 1.08003 * 119.85356 * 179.72575 * 16 15 14 42 42 H 1.08004 * 119.92336 * 179.97438 * 17 16 15 43 43 H 1.08006 * 120.07837 * 179.97438 * 18 17 16 44 44 H 1.08998 * 112.94733 * 290.33357 * 19 2 1 45 45 H 1.08995 * 113.76499 * 336.34611 * 20 19 2 46 46 H 1.09001 * 113.77051 * 107.74530 * 20 19 2 47 47 H 0.96995 * 120.00309 * 180.02562 * 25 24 22 48 48 H 1.08990 * 113.76954 * 221.15524 * 30 21 20 49 49 H 1.09002 * 113.87107 * 89.76653 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.1470 -0.0181 2.3572 6 8 1.8582 1.1586 2.4116 7 6 2.6498 -0.7282 3.5876 8 1 3.6492 -1.1201 3.3980 9 6 1.7062 -1.8825 3.9316 10 7 2.6985 0.2130 4.7092 11 6 3.5460 -0.0036 5.7344 12 8 4.2698 -0.9803 5.7287 13 6 3.5955 0.9465 6.8660 14 6 2.7700 2.0720 6.8728 15 6 2.8181 2.9524 7.9339 16 6 3.6893 2.7270 8.9848 17 6 4.5136 1.6159 8.9819 18 6 4.4721 0.7252 7.9294 19 6 2.0401 -0.7213 -1.2491 20 6 3.4849 -0.3521 -1.6315 21 7 2.9979 -0.3178 -3.0268 22 6 3.5876 -0.4759 -4.2525 23 1 2.9791 -0.5092 -5.1442 24 6 4.9674 -0.5933 -4.3490 25 7 5.7007 -0.6529 -3.2577 26 14 5.7834 -0.6666 -6.0277 27 1 6.2266 0.6946 -6.4225 28 1 6.9589 -1.5720 -5.9675 29 1 4.8133 -1.1808 -7.0276 30 6 1.6214 -0.0473 -2.5684 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5139 0.8900 34 1 2.2491 -1.6317 1.1528 35 1 0.7070 -1.4907 4.1211 36 1 2.0701 -2.3964 4.8213 37 1 1.6697 -2.5829 3.0972 38 1 2.1208 0.9921 4.7139 39 1 2.0925 2.2512 6.0511 40 1 2.1772 3.8217 7.9422 41 1 3.7262 3.4217 9.8110 42 1 5.1917 1.4459 9.8052 43 1 5.1165 -0.1417 7.9281 44 1 1.8529 -1.7948 -1.2261 45 1 3.8047 0.6190 -1.2539 46 1 4.2072 -1.1448 -1.4364 47 1 6.6648 -0.7346 -3.3251 48 1 0.8588 -0.5971 -3.1198 49 1 1.3909 1.0131 -2.4662 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725262552.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:54:43 Heat of formation + Delta-G solvation = -17.881113 kcal Electronic energy + Delta-G solvation = -29477.725176 eV Core-core repulsion = 25405.414491 eV Total energy + Delta-G solvation = -4072.310685 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.72194 -40.85548 -39.78456 -39.13014 -36.43173 -36.02664 -34.24645 -33.17675 -31.93300 -31.80902 -30.54760 -29.34268 -26.70168 -26.04251 -25.60780 -24.54210 -23.47134 -22.77213 -21.55710 -21.38644 -20.73134 -19.47491 -18.76426 -17.95200 -17.73717 -17.08931 -16.91493 -16.69460 -16.44409 -16.11990 -15.80502 -15.69687 -15.47759 -15.18678 -14.81574 -14.74466 -14.53953 -14.32598 -14.14388 -13.86695 -13.54302 -13.36730 -13.33906 -13.23134 -13.09125 -12.89497 -12.71274 -12.68100 -12.58343 -12.53412 -12.03060 -11.99083 -11.74138 -11.50709 -11.26793 -11.17792 -10.92603 -10.87866 -10.37450 -10.07890 -9.96231 -9.91563 -8.92081 -7.93691 -5.25970 -0.16725 0.40718 1.43561 1.45702 1.48162 1.54585 1.67203 1.82411 2.32458 2.46073 2.88856 3.27074 3.36545 3.48911 3.64596 3.77628 3.89523 3.95291 3.99897 4.01412 4.09347 4.24369 4.31098 4.46198 4.49506 4.51682 4.59995 4.63548 4.75434 4.75995 4.84067 4.85744 4.87901 5.02838 5.05202 5.09547 5.15847 5.20955 5.24877 5.33977 5.36773 5.43698 5.45713 5.50237 5.55071 5.66095 5.92113 5.94110 6.35824 6.46994 6.90048 7.03099 7.12408 7.59535 8.55874 9.23978 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.015749 B = 0.002008 C = 0.001904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.493085 B =13940.441304 C =14705.329750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.160 3.840 3 H 0.060 0.940 4 N -0.702 5.702 5 C 0.515 3.485 6 O -0.571 6.571 7 C 0.125 3.875 8 H 0.107 0.893 9 C -0.150 4.150 10 N -0.703 5.703 11 C 0.559 3.441 12 O -0.574 6.574 13 C -0.158 4.158 14 C -0.090 4.090 15 C -0.129 4.129 16 C -0.089 4.089 17 C -0.131 4.131 18 C -0.077 4.077 19 C -0.109 4.109 20 C 0.169 3.831 21 N -0.645 5.645 22 C -0.234 4.234 23 H 0.086 0.914 24 C -0.071 4.071 25 N -0.954 5.954 26 Si 0.977 3.023 27 H -0.291 1.291 28 H -0.295 1.295 29 H -0.263 1.263 30 C 0.130 3.870 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.053 0.947 34 H 0.414 0.586 35 H 0.072 0.928 36 H 0.067 0.933 37 H 0.095 0.905 38 H 0.414 0.586 39 H 0.136 0.864 40 H 0.155 0.845 41 H 0.158 0.842 42 H 0.152 0.848 43 H 0.125 0.875 44 H 0.108 0.892 45 H 0.002 0.998 46 H 0.037 0.963 47 H 0.247 0.753 48 H 0.066 0.934 49 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.978 2.631 25.463 28.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.055 3.945 3 H 0.079 0.921 4 N -0.353 5.353 5 C 0.301 3.699 6 O -0.451 6.451 7 C 0.017 3.983 8 H 0.125 0.875 9 C -0.208 4.208 10 N -0.356 5.356 11 C 0.348 3.652 12 O -0.454 6.454 13 C -0.161 4.161 14 C -0.108 4.108 15 C -0.147 4.147 16 C -0.107 4.107 17 C -0.148 4.148 18 C -0.096 4.096 19 C -0.129 4.129 20 C 0.043 3.957 21 N -0.372 5.372 22 C -0.362 4.362 23 H 0.104 0.896 24 C -0.264 4.264 25 N -0.603 5.603 26 Si 0.805 3.195 27 H -0.218 1.218 28 H -0.222 1.222 29 H -0.187 1.187 30 C 0.005 3.995 31 H 0.091 0.909 32 H 0.095 0.905 33 H 0.072 0.928 34 H 0.251 0.749 35 H 0.091 0.909 36 H 0.086 0.914 37 H 0.113 0.887 38 H 0.253 0.747 39 H 0.154 0.846 40 H 0.173 0.827 41 H 0.176 0.824 42 H 0.170 0.830 43 H 0.143 0.857 44 H 0.126 0.874 45 H 0.020 0.980 46 H 0.055 0.945 47 H 0.056 0.944 48 H 0.084 0.916 49 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -11.465 2.715 25.200 27.818 hybrid contribution 1.067 0.070 -1.211 1.616 sum -10.397 2.785 23.989 26.293 Atomic orbital electron populations 1.22040 0.92849 1.03319 1.02419 1.20875 0.95347 0.95766 0.82553 0.92140 1.45908 1.65964 1.14782 1.08670 1.20689 0.77137 0.86878 0.85180 1.90667 1.51957 1.16993 1.85445 1.20833 1.02661 0.90550 0.84282 0.87533 1.22090 0.98684 0.96121 1.03923 1.45650 1.41857 1.28536 1.19583 1.18660 0.78757 0.85138 0.82620 1.90750 1.43434 1.31316 1.79939 1.19896 1.02483 0.97527 0.96184 1.21565 0.97153 0.92823 0.99276 1.21506 0.99788 0.99985 0.93439 1.21823 0.93496 0.96768 0.98629 1.21473 1.00304 0.94525 0.98532 1.21398 0.96178 0.99445 0.92616 1.23471 0.95936 1.00755 0.92731 1.22126 0.94039 0.96261 0.83242 1.46422 1.06172 1.82689 1.01896 1.19459 0.90341 1.41509 0.84900 0.89587 1.25688 0.96760 1.03120 1.00784 1.70021 1.04530 1.57722 1.28041 0.85079 0.77986 0.77001 0.79435 1.21794 1.22155 1.18744 1.22687 0.87614 0.97537 0.91634 0.90851 0.90501 0.92765 0.74882 0.90861 0.91422 0.88658 0.74713 0.84576 0.82737 0.82439 0.82992 0.85653 0.87390 0.98000 0.94500 0.94371 0.91571 0.93943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.21 9.31 71.98 0.67 -2.54 16 2 C 0.16 4.42 2.38 44.99 0.11 4.53 16 3 H 0.06 2.06 7.42 -2.39 -0.02 2.04 16 4 N -0.70 -16.75 4.97 -442.55 -2.20 -18.95 16 5 C 0.52 13.30 7.19 87.66 0.63 13.93 16 6 O -0.57 -18.15 15.50 -3.04 -0.05 -18.19 16 7 C 0.13 2.79 2.98 44.25 0.13 2.93 16 8 H 0.11 2.66 7.58 -2.38 -0.02 2.64 16 9 C -0.15 -2.46 9.38 71.98 0.68 -1.78 16 10 N -0.70 -15.99 4.90 -448.97 -2.20 -18.19 16 11 C 0.56 14.36 7.74 86.79 0.67 15.03 16 12 O -0.57 -18.32 16.01 -3.90 -0.06 -18.38 16 13 C -0.16 -3.34 5.87 -20.09 -0.12 -3.45 16 14 C -0.09 -1.44 9.54 22.53 0.21 -1.23 16 15 C -0.13 -1.52 10.03 22.23 0.22 -1.30 16 16 C -0.09 -0.93 10.04 22.33 0.22 -0.70 16 17 C -0.13 -1.71 10.03 22.23 0.22 -1.48 16 18 C -0.08 -1.49 9.60 22.52 0.22 -1.27 16 19 C -0.11 -3.62 3.47 -10.13 -0.04 -3.65 16 20 C 0.17 7.97 6.99 86.44 0.60 8.58 16 21 N -0.65 -32.94 3.70 -716.05 -2.65 -35.59 16 22 C -0.23 -13.18 10.70 84.03 0.90 -12.28 16 23 H 0.09 4.60 7.83 -2.91 -0.02 4.58 16 24 C -0.07 -4.09 5.50 84.86 0.47 -3.63 16 25 N -0.95 -58.85 11.51 21.65 0.25 -58.60 16 26 Si 0.98 46.31 29.56 68.60 2.03 48.34 16 27 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 28 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 29 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 30 C 0.13 4.91 7.64 86.49 0.66 5.57 16 31 H 0.07 1.54 7.52 -2.39 -0.02 1.52 16 32 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.41 7.95 8.02 -92.71 -0.74 7.20 16 35 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.09 1.17 7.56 -2.39 -0.02 1.16 16 38 H 0.41 8.50 5.83 -92.71 -0.54 7.96 16 39 H 0.14 1.86 6.41 -2.91 -0.02 1.84 16 40 H 0.15 0.99 8.06 -2.91 -0.02 0.97 16 41 H 0.16 0.65 8.06 -2.91 -0.02 0.63 16 42 H 0.15 1.20 8.06 -2.91 -0.02 1.18 16 43 H 0.13 2.57 7.65 -2.91 -0.02 2.55 16 44 H 0.11 3.23 8.14 -2.39 -0.02 3.21 16 45 H 0.00 0.11 7.99 -2.39 -0.02 0.09 16 46 H 0.04 1.94 7.37 -2.39 -0.02 1.93 16 47 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16 48 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 49 H 0.04 1.56 8.10 -2.39 -0.02 1.54 16 Total: -1.00 -78.70 406.45 1.27 -77.43 By element: Atomic # 1 Polarization: 25.22 SS G_CDS: -0.31 Total: 24.91 kcal Atomic # 6 Polarization: 10.78 SS G_CDS: 6.46 Total: 17.24 kcal Atomic # 7 Polarization: -124.54 SS G_CDS: -6.80 Total: -131.34 kcal Atomic # 8 Polarization: -36.47 SS G_CDS: -0.11 Total: -36.58 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 2.03 Total: 48.34 kcal Total: -78.70 1.27 -77.43 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725262552.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.546 kcal (2) G-P(sol) polarization free energy of solvation -78.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds