Wall clock time and date at job start Wed Apr 1 2020 04:33:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09001 * 109.47754 * 2 1 4 4 C 1.53007 * 109.46970 * 239.99989 * 2 1 3 5 5 C 1.53004 * 109.46792 * 175.00294 * 4 2 1 6 6 N 1.46499 * 109.47003 * 180.02562 * 5 4 2 7 7 C 1.34772 * 120.00307 * 179.97438 * 6 5 4 8 8 O 1.21280 * 120.00085 * 0.02562 * 7 6 5 9 9 C 1.50703 * 120.00241 * 179.97438 * 7 6 5 10 10 H 1.08995 * 112.88525 * 51.66730 * 9 7 6 11 11 C 1.52265 * 113.20748 * 183.03764 * 9 7 6 12 12 C 1.50559 * 87.23507 * 114.71518 * 11 9 7 13 13 C 1.38808 * 147.30888 * 179.53104 * 12 11 9 14 14 C 1.38064 * 120.09618 * 180.02562 * 13 12 11 15 15 C 1.38234 * 119.97913 * 0.02562 * 14 13 12 16 16 C 1.38073 * 119.98008 * 359.97438 * 15 14 13 17 17 C 1.37717 * 92.76699 * 359.79690 * 12 11 9 18 18 N 1.46904 * 109.47088 * 120.00697 * 2 1 3 19 19 C 1.46906 * 110.99299 * 274.99804 * 18 2 1 20 20 C 1.50705 * 109.46642 * 180.02562 * 19 18 2 21 21 O 1.21291 * 120.00148 * 359.97438 * 20 19 18 22 22 N 1.34779 * 119.99665 * 180.02562 * 20 19 18 23 23 C 1.37095 * 119.99543 * 179.97438 * 22 20 19 24 24 H 1.08004 * 120.00715 * 359.97438 * 23 22 20 25 25 C 1.38953 * 119.99873 * 179.97438 * 23 22 20 26 26 N 1.31411 * 120.00052 * 0.02562 * 25 23 22 27 27 Si 1.86798 * 120.00188 * 180.02562 * 25 23 22 28 28 H 1.48496 * 109.47424 * 59.99894 * 27 25 23 29 29 H 1.48505 * 109.47259 * 180.02562 * 27 25 23 30 30 H 1.48510 * 109.46813 * 299.99948 * 27 25 23 31 31 H 1.09004 * 109.47235 * 299.99859 * 1 2 3 32 32 H 1.09007 * 109.47245 * 59.99560 * 1 2 3 33 33 H 1.09002 * 109.47777 * 179.97438 * 1 2 3 34 34 H 1.08997 * 109.47230 * 55.00623 * 4 2 1 35 35 H 1.08993 * 109.47322 * 295.00352 * 4 2 1 36 36 H 1.09000 * 109.47457 * 60.00222 * 5 4 2 37 37 H 1.09003 * 109.47102 * 300.00065 * 5 4 2 38 38 H 0.97005 * 119.99775 * 359.97438 * 6 5 4 39 39 H 1.09002 * 113.97251 * 0.06682 * 11 9 7 40 40 H 1.09004 * 113.20452 * 229.25041 * 11 9 7 41 41 H 1.08000 * 119.94830 * 0.02970 * 13 12 11 42 42 H 1.07993 * 120.01477 * 180.02562 * 14 13 12 43 43 H 1.07998 * 120.01542 * 180.02562 * 15 14 13 44 44 H 1.08002 * 119.95026 * 179.97438 * 16 15 14 45 45 H 1.00898 * 111.00390 * 151.04661 * 18 2 1 46 46 H 1.08999 * 109.47344 * 299.99648 * 19 18 2 47 47 H 1.08996 * 109.47214 * 59.99773 * 19 18 2 48 48 H 0.96992 * 120.00267 * 359.97438 * 22 20 19 49 49 H 0.96992 * 120.00329 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5648 -0.6134 -1.3137 6 7 4.0531 -1.3034 -2.5102 7 6 5.3738 -1.3388 -2.7759 8 8 6.1583 -0.7996 -2.0243 9 6 5.8762 -2.0491 -4.0064 10 1 5.3675 -1.7316 -4.9166 11 6 7.3948 -2.0568 -4.1169 12 6 7.3263 -3.5520 -3.9544 13 6 8.0196 -4.7526 -3.8849 14 6 7.3350 -5.9380 -3.7052 15 6 5.9571 -5.9300 -3.5948 16 6 5.2663 -4.7365 -3.6637 17 6 5.9531 -3.5446 -3.8496 18 7 2.0196 -0.6927 1.1994 19 6 2.0824 0.2225 2.3469 20 6 2.5884 -0.5218 3.5557 21 8 2.8687 -1.6987 3.4699 22 7 2.7285 0.1203 4.7324 23 6 3.1884 -0.5569 5.8322 24 1 3.4380 -1.6049 5.7558 25 6 3.3334 0.1052 7.0452 26 7 3.0293 1.3802 7.1384 27 14 3.9607 -0.8173 8.5436 28 1 5.3168 -1.3532 8.2631 29 1 4.0236 0.1076 9.7038 30 1 3.0395 -1.9397 8.8553 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3635 -1.0276 -0.0005 34 1 1.6054 -0.2617 -2.1370 35 1 1.7515 -1.7715 -1.2057 36 1 3.9994 -1.0729 -0.4260 37 1 3.8532 0.4369 -1.3573 38 1 3.4257 -1.7350 -3.1111 39 1 7.9012 -1.5514 -3.2946 40 1 7.7558 -1.7404 -5.0956 41 1 9.0961 -4.7593 -3.9715 42 1 7.8757 -6.8712 -3.6510 43 1 5.4210 -6.8569 -3.4538 44 1 4.1897 -4.7308 -3.5778 45 1 2.9172 -1.1207 1.0287 46 1 2.7588 1.0460 2.1183 47 1 1.0870 0.6162 2.5525 48 1 2.5041 1.0614 4.8011 49 1 3.1301 1.8422 7.9852 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731731777.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:16 Heat of formation + Delta-G solvation = -15.035674 kcal Electronic energy + Delta-G solvation = -28848.768419 eV Core-core repulsion = 24776.581122 eV Total energy + Delta-G solvation = -4072.187297 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.42977 -39.31983 -38.43723 -37.18820 -35.65117 -34.83245 -33.86196 -31.63703 -31.14784 -30.99984 -29.29920 -27.86328 -26.43129 -25.63684 -24.05246 -23.20626 -22.26052 -21.29856 -20.55142 -19.82757 -19.20594 -17.87969 -17.70480 -17.08327 -16.54821 -16.07264 -15.89667 -15.50686 -15.20511 -15.14389 -14.73030 -14.59150 -14.41366 -13.90898 -13.66724 -13.59266 -13.33159 -13.32234 -13.01060 -12.85235 -12.50965 -12.40686 -12.24433 -12.15750 -11.85587 -11.68846 -11.56330 -11.33687 -11.27605 -11.23833 -11.01996 -10.88642 -10.76564 -10.41169 -10.19610 -10.17208 -9.46338 -9.30103 -9.12313 -8.89672 -8.41044 -8.04691 -7.92127 -6.37948 -3.78604 0.95549 1.06287 2.34676 2.87362 3.23259 3.28347 3.33178 3.44559 3.81765 3.94948 4.06584 4.08291 4.11803 4.34423 4.49415 4.63475 4.73976 4.76218 4.82459 4.86749 4.94831 5.14641 5.24800 5.27113 5.28631 5.37770 5.38664 5.40915 5.53539 5.55475 5.65841 5.70751 5.77925 5.81631 5.84595 5.90302 6.02149 6.05375 6.06648 6.18604 6.19028 6.27412 6.36452 6.37112 6.64672 7.21501 7.26482 7.58703 7.68416 7.96936 8.10023 8.65357 9.21638 9.58283 10.10008 10.79833 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010330 B = 0.002070 C = 0.001865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2709.895125 B =13521.753218 C =15007.907724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.086 3.914 3 H 0.045 0.955 4 C -0.132 4.132 5 C 0.112 3.888 6 N -0.724 5.724 7 C 0.528 3.472 8 O -0.528 6.528 9 C -0.067 4.067 10 H 0.122 0.878 11 C -0.060 4.060 12 C -0.117 4.117 13 C -0.097 4.097 14 C -0.111 4.111 15 C -0.120 4.120 16 C -0.084 4.084 17 C -0.129 4.129 18 N -0.666 5.666 19 C 0.050 3.950 20 C 0.441 3.559 21 O -0.583 6.583 22 N -0.564 5.564 23 C -0.299 4.299 24 H 0.102 0.898 25 C 0.022 3.978 26 N -0.903 5.903 27 Si 0.931 3.069 28 H -0.274 1.274 29 H -0.284 1.284 30 H -0.274 1.274 31 H 0.057 0.943 32 H 0.052 0.948 33 H 0.062 0.938 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.073 0.927 37 H 0.068 0.932 38 H 0.401 0.599 39 H 0.111 0.889 40 H 0.096 0.904 41 H 0.121 0.879 42 H 0.127 0.873 43 H 0.128 0.872 44 H 0.120 0.880 45 H 0.349 0.651 46 H 0.044 0.956 47 H 0.086 0.914 48 H 0.392 0.608 49 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.895 -5.587 -28.098 28.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.025 4.025 3 H 0.063 0.937 4 C -0.170 4.170 5 C -0.012 4.012 6 N -0.375 5.375 7 C 0.313 3.687 8 O -0.404 6.404 9 C -0.088 4.088 10 H 0.139 0.861 11 C -0.097 4.097 12 C -0.117 4.117 13 C -0.115 4.115 14 C -0.129 4.129 15 C -0.138 4.138 16 C -0.102 4.102 17 C -0.130 4.130 18 N -0.301 5.301 19 C -0.083 4.083 20 C 0.226 3.774 21 O -0.467 6.467 22 N -0.201 5.201 23 C -0.429 4.429 24 H 0.120 0.880 25 C -0.180 4.180 26 N -0.544 5.544 27 Si 0.758 3.242 28 H -0.199 1.199 29 H -0.210 1.210 30 H -0.199 1.199 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.094 0.906 35 H 0.100 0.900 36 H 0.091 0.909 37 H 0.087 0.913 38 H 0.235 0.765 39 H 0.129 0.871 40 H 0.115 0.885 41 H 0.139 0.861 42 H 0.145 0.855 43 H 0.146 0.854 44 H 0.138 0.862 45 H 0.171 0.829 46 H 0.061 0.939 47 H 0.104 0.896 48 H 0.225 0.775 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.054 -6.107 -27.239 27.990 hybrid contribution 0.493 0.461 0.423 0.797 sum 2.546 -5.646 -26.815 27.521 Atomic orbital electron populations 1.21784 0.94252 1.02501 1.01146 1.21456 0.96261 0.95802 0.88952 0.93726 1.21979 0.93599 1.02848 0.98567 1.21511 0.94356 0.97514 0.87804 1.45909 1.07345 1.57085 1.27162 1.20071 0.82325 0.79801 0.86523 1.90743 1.55213 1.45415 1.49036 1.21160 0.98822 0.90977 0.97838 0.86062 1.21454 0.93361 0.90615 1.04284 1.21813 0.95471 0.95559 0.98844 1.20440 0.99910 0.90619 1.00519 1.21051 0.94497 0.97708 0.99610 1.21012 0.94477 0.97586 1.00709 1.20448 0.99933 0.90579 0.99239 1.21314 0.96025 0.93296 1.02330 1.60211 1.34955 1.32144 1.02802 1.21726 1.01257 0.93945 0.91352 1.19822 0.84900 0.88210 0.84446 1.90521 1.55287 1.16160 1.84750 1.41853 1.57810 1.12434 1.07972 1.19654 1.39961 0.96413 0.86823 0.88003 1.25258 0.97689 0.95785 0.99230 1.69602 1.48710 1.08856 1.27232 0.85919 0.79447 0.78825 0.80033 1.19907 1.20986 1.19900 0.92380 0.92893 0.91859 0.90616 0.90049 0.90879 0.91333 0.76531 0.87063 0.88526 0.86131 0.85474 0.85385 0.86153 0.82945 0.93852 0.89571 0.77467 0.91851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 9.41 37.15 0.35 -1.15 16 2 C 0.09 1.01 2.65 -67.71 -0.18 0.83 16 3 H 0.04 0.52 7.80 -51.93 -0.40 0.11 16 4 C -0.13 -1.21 4.92 -26.73 -0.13 -1.35 16 5 C 0.11 1.23 5.50 -4.04 -0.02 1.20 16 6 N -0.72 -6.77 5.56 -60.29 -0.33 -7.10 16 7 C 0.53 6.09 7.35 -10.99 -0.08 6.01 16 8 O -0.53 -8.46 15.66 5.56 0.09 -8.37 16 9 C -0.07 -0.57 4.30 -93.65 -0.40 -0.97 16 10 H 0.12 0.66 8.14 -51.93 -0.42 0.23 16 11 C -0.06 -0.52 7.66 -28.62 -0.22 -0.74 16 12 C -0.12 -1.16 7.42 -104.96 -0.78 -1.93 16 13 C -0.10 -0.88 10.06 -39.43 -0.40 -1.27 16 14 C -0.11 -0.92 10.04 -39.65 -0.40 -1.31 16 15 C -0.12 -1.00 10.04 -39.64 -0.40 -1.40 16 16 C -0.08 -0.75 10.06 -39.43 -0.40 -1.15 16 17 C -0.13 -1.24 6.90 -104.96 -0.72 -1.96 16 18 N -0.67 -10.84 5.93 -107.98 -0.64 -11.48 16 19 C 0.05 0.91 5.97 -4.97 -0.03 0.88 16 20 C 0.44 10.75 7.82 -10.98 -0.09 10.66 16 21 O -0.58 -16.33 15.78 5.55 0.09 -16.24 16 22 N -0.56 -14.72 5.29 -10.96 -0.06 -14.77 16 23 C -0.30 -8.56 9.68 -14.93 -0.14 -8.70 16 24 H 0.10 3.05 7.16 -52.48 -0.38 2.68 16 25 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 26 N -0.90 -25.04 13.05 55.50 0.72 -24.31 16 27 Si 0.93 21.55 29.55 -169.99 -5.02 16.53 16 28 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 29 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 30 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 31 H 0.06 0.68 7.45 -51.93 -0.39 0.29 16 32 H 0.05 0.45 8.14 -51.92 -0.42 0.02 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.07 1.02 6.43 -51.93 -0.33 0.68 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.40 2.49 8.47 -40.82 -0.35 2.14 16 39 H 0.11 1.17 7.01 -51.93 -0.36 0.81 16 40 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.12 0.87 8.06 -52.49 -0.42 0.44 16 42 H 0.13 0.76 8.06 -52.49 -0.42 0.33 16 43 H 0.13 0.80 8.06 -52.49 -0.42 0.37 16 44 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16 45 H 0.35 6.05 6.17 -39.29 -0.24 5.80 16 46 H 0.04 0.72 8.06 -51.93 -0.42 0.31 16 47 H 0.09 1.44 7.43 -51.93 -0.39 1.05 16 48 H 0.39 9.75 7.90 -40.82 -0.32 9.43 16 49 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 408.84 15.07 6.16 6.16 Total: -1.00 -35.52 408.84 -10.50 -46.02 By element: Atomic # 1 Polarization: 22.80 SS G_CDS: -7.37 Total: 15.44 kcal Atomic # 6 Polarization: 2.27 SS G_CDS: -4.14 Total: -1.86 kcal Atomic # 7 Polarization: -57.36 SS G_CDS: -0.31 Total: -57.67 kcal Atomic # 8 Polarization: -24.79 SS G_CDS: 0.17 Total: -24.61 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -35.52 -10.50 -46.02 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731731777.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.986 kcal (2) G-P(sol) polarization free energy of solvation -35.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds