Wall clock time and date at job start Wed Apr 1 2020 04:33:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09001 * 109.47754 * 2 1 4 4 C 1.53007 * 109.46970 * 239.99989 * 2 1 3 5 5 C 1.53004 * 109.46792 * 175.00294 * 4 2 1 6 6 N 1.46499 * 109.47003 * 180.02562 * 5 4 2 7 7 C 1.34772 * 120.00307 * 179.97438 * 6 5 4 8 8 O 1.21280 * 120.00085 * 0.02562 * 7 6 5 9 9 C 1.50703 * 120.00241 * 179.97438 * 7 6 5 10 10 H 1.08995 * 112.88525 * 51.66730 * 9 7 6 11 11 C 1.52265 * 113.20748 * 183.03764 * 9 7 6 12 12 C 1.50559 * 87.23507 * 114.71518 * 11 9 7 13 13 C 1.38808 * 147.30888 * 179.53104 * 12 11 9 14 14 C 1.38064 * 120.09618 * 180.02562 * 13 12 11 15 15 C 1.38234 * 119.97913 * 0.02562 * 14 13 12 16 16 C 1.38073 * 119.98008 * 359.97438 * 15 14 13 17 17 C 1.37717 * 92.76699 * 359.79690 * 12 11 9 18 18 N 1.46904 * 109.47088 * 120.00697 * 2 1 3 19 19 C 1.46906 * 110.99299 * 274.99804 * 18 2 1 20 20 C 1.50705 * 109.46642 * 180.02562 * 19 18 2 21 21 O 1.21291 * 120.00148 * 359.97438 * 20 19 18 22 22 N 1.34779 * 119.99665 * 180.02562 * 20 19 18 23 23 C 1.37095 * 119.99543 * 179.97438 * 22 20 19 24 24 H 1.08004 * 120.00715 * 359.97438 * 23 22 20 25 25 C 1.38953 * 119.99873 * 179.97438 * 23 22 20 26 26 N 1.31411 * 120.00052 * 0.02562 * 25 23 22 27 27 Si 1.86798 * 120.00188 * 180.02562 * 25 23 22 28 28 H 1.48496 * 109.47424 * 59.99894 * 27 25 23 29 29 H 1.48505 * 109.47259 * 180.02562 * 27 25 23 30 30 H 1.48510 * 109.46813 * 299.99948 * 27 25 23 31 31 H 1.09004 * 109.47235 * 299.99859 * 1 2 3 32 32 H 1.09007 * 109.47245 * 59.99560 * 1 2 3 33 33 H 1.09002 * 109.47777 * 179.97438 * 1 2 3 34 34 H 1.08997 * 109.47230 * 55.00623 * 4 2 1 35 35 H 1.08993 * 109.47322 * 295.00352 * 4 2 1 36 36 H 1.09000 * 109.47457 * 60.00222 * 5 4 2 37 37 H 1.09003 * 109.47102 * 300.00065 * 5 4 2 38 38 H 0.97005 * 119.99775 * 359.97438 * 6 5 4 39 39 H 1.09002 * 113.97251 * 0.06682 * 11 9 7 40 40 H 1.09004 * 113.20452 * 229.25041 * 11 9 7 41 41 H 1.08000 * 119.94830 * 0.02970 * 13 12 11 42 42 H 1.07993 * 120.01477 * 180.02562 * 14 13 12 43 43 H 1.07998 * 120.01542 * 180.02562 * 15 14 13 44 44 H 1.08002 * 119.95026 * 179.97438 * 16 15 14 45 45 H 1.00898 * 111.00390 * 151.04661 * 18 2 1 46 46 H 1.08999 * 109.47344 * 299.99648 * 19 18 2 47 47 H 1.08996 * 109.47214 * 59.99773 * 19 18 2 48 48 H 0.96992 * 120.00267 * 359.97438 * 22 20 19 49 49 H 0.96992 * 120.00329 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5648 -0.6134 -1.3137 6 7 4.0531 -1.3034 -2.5102 7 6 5.3738 -1.3388 -2.7759 8 8 6.1583 -0.7996 -2.0243 9 6 5.8762 -2.0491 -4.0064 10 1 5.3675 -1.7316 -4.9166 11 6 7.3948 -2.0568 -4.1169 12 6 7.3263 -3.5520 -3.9544 13 6 8.0196 -4.7526 -3.8849 14 6 7.3350 -5.9380 -3.7052 15 6 5.9571 -5.9300 -3.5948 16 6 5.2663 -4.7365 -3.6637 17 6 5.9531 -3.5446 -3.8496 18 7 2.0196 -0.6927 1.1994 19 6 2.0824 0.2225 2.3469 20 6 2.5884 -0.5218 3.5557 21 8 2.8687 -1.6987 3.4699 22 7 2.7285 0.1203 4.7324 23 6 3.1884 -0.5569 5.8322 24 1 3.4380 -1.6049 5.7558 25 6 3.3334 0.1052 7.0452 26 7 3.0293 1.3802 7.1384 27 14 3.9607 -0.8173 8.5436 28 1 5.3168 -1.3532 8.2631 29 1 4.0236 0.1076 9.7038 30 1 3.0395 -1.9397 8.8553 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3635 -1.0276 -0.0005 34 1 1.6054 -0.2617 -2.1370 35 1 1.7515 -1.7715 -1.2057 36 1 3.9994 -1.0729 -0.4260 37 1 3.8532 0.4369 -1.3573 38 1 3.4257 -1.7350 -3.1111 39 1 7.9012 -1.5514 -3.2946 40 1 7.7558 -1.7404 -5.0956 41 1 9.0961 -4.7593 -3.9715 42 1 7.8757 -6.8712 -3.6510 43 1 5.4210 -6.8569 -3.4538 44 1 4.1897 -4.7308 -3.5778 45 1 2.9172 -1.1207 1.0287 46 1 2.7588 1.0460 2.1183 47 1 1.0870 0.6162 2.5525 48 1 2.5041 1.0614 4.8011 49 1 3.1301 1.8422 7.9852 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731731777.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:15 Heat of formation + Delta-G solvation = -40.460999 kcal Electronic energy + Delta-G solvation = -28849.870944 eV Core-core repulsion = 24776.581122 eV Total energy + Delta-G solvation = -4073.289822 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.15408 -40.34283 -40.04135 -38.41452 -36.36362 -36.05747 -35.72036 -33.35227 -32.64053 -31.73804 -30.18091 -28.54047 -28.08352 -26.47406 -25.73859 -24.08880 -22.99127 -22.08124 -21.43268 -21.15839 -20.57999 -19.94031 -18.54035 -17.87606 -17.71525 -17.33826 -16.90563 -16.75315 -16.43729 -16.21523 -16.03837 -15.72384 -15.54938 -15.28718 -15.24829 -14.58541 -14.40271 -14.08030 -13.94229 -13.93789 -13.57177 -13.52025 -13.36853 -13.17754 -13.05503 -12.91595 -12.88226 -12.60106 -12.46176 -12.27982 -12.18800 -12.12428 -11.96372 -11.77651 -11.54101 -11.52610 -11.07585 -10.37473 -10.20269 -10.04345 -9.78476 -9.57571 -9.34242 -8.48677 -5.97791 0.29102 0.40216 1.37949 1.39429 1.46709 1.50830 2.02321 2.07527 2.27523 2.78524 2.91611 3.13807 3.18100 3.39688 3.43242 3.49093 3.76123 3.81320 3.99078 4.10131 4.17960 4.18800 4.25731 4.28375 4.42771 4.47187 4.52624 4.59679 4.62756 4.65531 4.67301 4.78567 4.92997 4.95606 4.98734 5.00521 5.04010 5.12888 5.18955 5.35541 5.38201 5.42683 5.47270 5.54788 5.70018 5.89544 6.02561 6.11727 6.38301 6.45650 6.57670 7.09904 7.15249 7.53175 8.08747 8.68598 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010330 B = 0.002070 C = 0.001865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2709.895125 B =13521.753218 C =15007.907724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.082 3.918 3 H 0.053 0.947 4 C -0.117 4.117 5 C 0.115 3.885 6 N -0.708 5.708 7 C 0.522 3.478 8 O -0.582 6.582 9 C -0.055 4.055 10 H 0.159 0.841 11 C -0.061 4.061 12 C -0.142 4.142 13 C -0.113 4.113 14 C -0.117 4.117 15 C -0.129 4.129 16 C -0.096 4.096 17 C -0.143 4.143 18 N -0.680 5.680 19 C 0.065 3.935 20 C 0.435 3.565 21 O -0.624 6.624 22 N -0.573 5.573 23 C -0.336 4.336 24 H 0.077 0.923 25 C -0.013 4.013 26 N -0.920 5.920 27 Si 0.994 3.006 28 H -0.273 1.273 29 H -0.268 1.268 30 H -0.271 1.271 31 H 0.046 0.954 32 H 0.084 0.916 33 H 0.055 0.945 34 H 0.112 0.888 35 H 0.081 0.919 36 H 0.037 0.963 37 H 0.062 0.938 38 H 0.419 0.581 39 H 0.086 0.914 40 H 0.124 0.876 41 H 0.132 0.868 42 H 0.149 0.851 43 H 0.149 0.851 44 H 0.137 0.863 45 H 0.340 0.660 46 H 0.061 0.939 47 H 0.106 0.894 48 H 0.397 0.603 49 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.724 -5.562 -29.777 30.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.028 4.028 3 H 0.071 0.929 4 C -0.154 4.154 5 C -0.009 4.009 6 N -0.360 5.360 7 C 0.309 3.691 8 O -0.462 6.462 9 C -0.076 4.076 10 H 0.177 0.823 11 C -0.098 4.098 12 C -0.142 4.142 13 C -0.131 4.131 14 C -0.135 4.135 15 C -0.147 4.147 16 C -0.114 4.114 17 C -0.143 4.143 18 N -0.315 5.315 19 C -0.068 4.068 20 C 0.223 3.777 21 O -0.511 6.511 22 N -0.210 5.210 23 C -0.466 4.466 24 H 0.095 0.905 25 C -0.213 4.213 26 N -0.560 5.560 27 Si 0.817 3.183 28 H -0.198 1.198 29 H -0.192 1.192 30 H -0.196 1.196 31 H 0.065 0.935 32 H 0.102 0.898 33 H 0.074 0.926 34 H 0.130 0.870 35 H 0.100 0.900 36 H 0.055 0.945 37 H 0.081 0.919 38 H 0.257 0.743 39 H 0.104 0.896 40 H 0.142 0.858 41 H 0.150 0.850 42 H 0.166 0.834 43 H 0.166 0.834 44 H 0.155 0.845 45 H 0.160 0.840 46 H 0.079 0.921 47 H 0.124 0.876 48 H 0.230 0.770 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.826 -6.068 -28.959 29.600 hybrid contribution 0.848 0.422 0.908 1.312 sum 1.674 -5.646 -28.051 28.663 Atomic orbital electron populations 1.21776 0.93059 1.02349 1.02147 1.21648 0.97026 0.96098 0.87985 0.92935 1.21888 0.91908 1.02966 0.98677 1.21368 0.95583 0.96872 0.87081 1.45781 1.07190 1.56279 1.26708 1.20668 0.82432 0.79127 0.86878 1.90721 1.56612 1.47864 1.50985 1.21175 0.98788 0.90022 0.97578 0.82345 1.21474 0.93620 0.89922 1.04766 1.22118 0.96141 0.96284 0.99621 1.20742 1.00819 0.90835 1.00680 1.21393 0.94860 0.98359 0.98909 1.21372 0.94788 0.98361 1.00158 1.20765 1.01025 0.90587 0.99065 1.21505 0.96092 0.93896 1.02830 1.60266 1.34511 1.32653 1.04069 1.21583 1.02165 0.93707 0.89336 1.20933 0.83257 0.88023 0.85496 1.90484 1.56713 1.18284 1.85617 1.41931 1.58247 1.12586 1.08242 1.19629 1.42363 0.95947 0.88641 0.90459 1.26062 0.97161 0.96665 1.01395 1.69662 1.48452 1.09674 1.28246 0.84986 0.78669 0.77888 0.76767 1.19837 1.19236 1.19589 0.93533 0.89765 0.92576 0.86990 0.89995 0.94452 0.91921 0.74349 0.89561 0.85833 0.84962 0.83370 0.83376 0.84472 0.84013 0.92082 0.87633 0.76956 0.91216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.56 9.41 71.98 0.68 -1.89 16 2 C 0.08 1.77 2.65 44.91 0.12 1.89 16 3 H 0.05 1.09 7.80 -2.39 -0.02 1.07 16 4 C -0.12 -1.87 4.92 30.60 0.15 -1.72 16 5 C 0.12 2.46 5.50 86.38 0.48 2.94 16 6 N -0.71 -12.40 5.56 -463.06 -2.57 -14.97 16 7 C 0.52 11.95 7.35 87.66 0.64 12.60 16 8 O -0.58 -19.47 15.66 -3.03 -0.05 -19.52 16 9 C -0.06 -0.87 4.30 -12.76 -0.05 -0.93 16 10 H 0.16 1.25 8.14 -2.39 -0.02 1.23 16 11 C -0.06 -1.05 7.66 29.37 0.23 -0.83 16 12 C -0.14 -2.78 7.42 -20.08 -0.15 -2.93 16 13 C -0.11 -2.01 10.06 22.36 0.22 -1.79 16 14 C -0.12 -1.84 10.04 22.23 0.22 -1.61 16 15 C -0.13 -2.00 10.04 22.23 0.22 -1.78 16 16 C -0.10 -1.61 10.06 22.37 0.22 -1.38 16 17 C -0.14 -2.62 6.90 -20.08 -0.14 -2.76 16 18 N -0.68 -21.94 5.93 -495.55 -2.94 -24.88 16 19 C 0.06 2.33 5.97 85.56 0.51 2.84 16 20 C 0.44 21.77 7.82 87.66 0.69 22.45 16 21 O -0.62 -36.28 15.78 -3.06 -0.05 -36.33 16 22 N -0.57 -30.66 5.29 -306.97 -1.62 -32.29 16 23 C -0.34 -19.80 9.68 84.04 0.81 -18.99 16 24 H 0.08 4.85 7.16 -2.91 -0.02 4.83 16 25 C -0.01 -0.72 5.50 84.93 0.47 -0.25 16 26 N -0.92 -50.84 13.05 21.66 0.28 -50.56 16 27 Si 0.99 44.18 29.55 68.60 2.03 46.21 16 28 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 29 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 30 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 31 H 0.05 0.99 7.45 -2.39 -0.02 0.97 16 32 H 0.08 1.08 8.14 -2.38 -0.02 1.06 16 33 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.11 1.06 8.14 -2.39 -0.02 1.05 16 35 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.04 1.08 6.43 -2.39 -0.02 1.07 16 37 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.42 4.15 8.47 -92.70 -0.79 3.37 16 39 H 0.09 1.94 7.01 -2.39 -0.02 1.93 16 40 H 0.12 1.36 8.14 -2.38 -0.02 1.34 16 41 H 0.13 1.88 8.06 -2.91 -0.02 1.86 16 42 H 0.15 1.55 8.06 -2.91 -0.02 1.53 16 43 H 0.15 1.57 8.06 -2.91 -0.02 1.55 16 44 H 0.14 1.68 8.06 -2.91 -0.02 1.66 16 45 H 0.34 12.07 6.17 -89.70 -0.55 11.51 16 46 H 0.06 1.99 8.06 -2.39 -0.02 1.98 16 47 H 0.11 3.41 7.43 -2.39 -0.02 3.39 16 48 H 0.40 20.08 7.90 -92.71 -0.73 19.35 16 49 H 0.28 14.39 8.31 -92.71 -0.77 13.62 16 Total: -1.00 -80.50 408.84 -0.68 -81.17 By element: Atomic # 1 Polarization: 46.36 SS G_CDS: -1.08 Total: 45.29 kcal Atomic # 6 Polarization: 0.56 SS G_CDS: 5.32 Total: 5.88 kcal Atomic # 7 Polarization: -115.84 SS G_CDS: -6.85 Total: -122.69 kcal Atomic # 8 Polarization: -55.75 SS G_CDS: -0.10 Total: -55.85 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -80.50 -0.68 -81.17 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731731777.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.711 kcal (2) G-P(sol) polarization free energy of solvation -80.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds