Wall clock time and date at job start Wed Apr 1 2020 04:43:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 5 5 C 1.50698 * 109.47721 * 295.00119 * 4 2 1 6 6 O 1.21287 * 119.99375 * 359.97438 * 5 4 2 7 7 N 1.34768 * 120.00550 * 180.02562 * 5 4 2 8 8 C 1.46504 * 119.99870 * 180.02562 * 7 5 4 9 9 C 1.53932 * 113.73278 * 251.72129 * 8 7 5 10 10 N 1.47956 * 86.18191 * 221.92409 * 9 8 7 11 11 C 1.46903 * 110.99917 * 137.58475 * 10 9 8 12 12 C 1.50708 * 109.47236 * 70.63992 * 11 10 9 13 13 O 1.21290 * 119.99703 * 0.02562 * 12 11 10 14 14 N 1.34774 * 119.99684 * 180.02562 * 12 11 10 15 15 C 1.37103 * 119.99216 * 179.97438 * 14 12 11 16 16 H 1.07992 * 120.00168 * 359.97438 * 15 14 12 17 17 C 1.38956 * 119.99501 * 180.02562 * 15 14 12 18 18 N 1.31415 * 119.99954 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 119.99918 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47587 * 59.99174 * 19 17 15 21 21 H 1.48505 * 109.47206 * 179.97438 * 19 17 15 22 22 H 1.48506 * 109.46586 * 299.99010 * 19 17 15 23 23 C 1.47958 * 90.76287 * 24.69151 * 10 9 8 24 24 C 1.50701 * 109.47419 * 239.99925 * 2 1 3 25 25 C 1.38236 * 119.99963 * 299.73020 * 24 2 1 26 26 C 1.38236 * 120.00036 * 179.81111 * 25 24 2 27 27 C 1.38226 * 119.99834 * 0.39071 * 26 25 24 28 28 C 1.38237 * 120.00085 * 359.86461 * 27 26 25 29 29 C 1.38229 * 120.00216 * 120.00264 * 24 2 1 30 30 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 31 31 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 32 32 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47325 * 55.00085 * 4 2 1 34 34 H 1.09008 * 109.47017 * 174.99994 * 4 2 1 35 35 H 0.97005 * 120.00103 * 359.97438 * 7 5 4 36 36 H 1.08996 * 112.94240 * 23.43115 * 8 7 5 37 37 H 1.09007 * 113.75920 * 336.24190 * 9 8 7 38 38 H 1.08998 * 113.75703 * 107.60404 * 9 8 7 39 39 H 1.08998 * 109.47271 * 190.63785 * 11 10 9 40 40 H 1.09000 * 109.47104 * 310.63770 * 11 10 9 41 41 H 0.96997 * 120.00647 * 359.97438 * 14 12 11 42 42 H 0.96999 * 119.99726 * 180.02562 * 18 17 15 43 43 H 1.09002 * 113.75678 * 220.99063 * 23 10 9 44 44 H 1.08995 * 113.75824 * 89.62962 * 23 10 9 45 45 H 1.08010 * 119.99941 * 359.97438 * 25 24 2 46 46 H 1.08001 * 119.99466 * 180.23187 * 26 25 24 47 47 H 1.08005 * 120.00406 * 179.83264 * 27 26 25 48 48 H 1.07998 * 120.00065 * 179.97438 * 28 27 26 49 49 H 1.08002 * 120.00084 * 359.97438 * 29 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6413 0.0570 2.4766 6 8 1.0117 1.0874 2.3632 7 7 1.9852 -0.3914 3.7001 8 6 1.5971 0.3650 4.8933 9 6 2.7736 1.0760 5.5859 10 7 2.1663 0.6278 6.8585 11 6 3.1928 0.1359 7.7872 12 6 4.0158 1.2955 8.2864 13 8 3.7710 2.4210 7.9063 14 7 5.0239 1.0818 9.1551 15 6 5.7728 2.1368 9.6088 16 1 5.5554 3.1388 9.2697 17 6 6.8125 1.9164 10.5040 18 7 7.0774 0.6970 10.9161 19 14 7.8326 3.3538 11.1228 20 1 6.9513 4.3195 11.8269 21 1 8.8707 2.8564 12.0610 22 1 8.4866 4.0280 9.9725 23 6 1.4959 -0.4948 6.1661 24 6 2.0324 -0.7104 -1.2304 25 6 1.7031 -2.0355 -1.4464 26 6 2.1607 -2.6860 -2.5770 27 6 2.9543 -2.0139 -3.4875 28 6 3.2880 -0.6903 -3.2690 29 6 2.8272 -0.0387 -2.1403 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6053 -1.7198 1.2952 34 1 3.1263 -0.7995 1.2056 35 1 2.4891 -1.2153 3.7908 36 1 0.7314 1.0060 4.7270 37 1 3.7435 0.6237 5.3788 38 1 2.7710 2.1582 5.4553 39 1 2.7122 -0.3585 8.6313 40 1 3.8399 -0.5733 7.2710 41 1 5.2194 0.1818 9.4593 42 1 7.8029 0.5433 11.5413 43 1 0.4725 -0.6678 6.4991 44 1 2.0921 -1.4065 6.1288 45 1 1.0861 -2.5618 -0.7330 46 1 1.9003 -3.7202 -2.7475 47 1 3.3141 -2.5228 -4.3696 48 1 3.9083 -0.1652 -3.9802 49 1 3.0878 0.9954 -1.9696 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732114941.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:46 Heat of formation + Delta-G solvation = -18.447951 kcal Electronic energy + Delta-G solvation = -28722.386827 eV Core-core repulsion = 24650.051563 eV Total energy + Delta-G solvation = -4072.335265 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.65968 -39.90741 -39.01503 -37.66853 -35.32977 -34.17611 -33.79317 -31.30109 -31.24805 -30.41025 -29.67444 -28.00204 -26.02656 -25.44334 -24.10334 -23.32866 -22.83032 -21.07267 -20.36928 -19.78424 -19.22035 -17.91597 -17.62436 -16.81337 -16.56324 -16.19282 -15.83181 -15.51227 -15.26178 -15.14310 -14.62869 -14.51192 -14.13514 -14.08566 -13.82415 -13.77195 -13.54258 -13.28507 -13.15433 -12.80176 -12.70753 -12.56205 -12.14188 -12.06915 -11.73651 -11.64834 -11.54522 -11.47675 -11.29168 -11.07958 -11.05258 -10.95734 -10.60170 -10.44705 -10.22310 -9.91649 -9.50910 -9.25134 -9.13069 -9.03422 -8.72020 -8.26414 -7.97775 -6.43049 -3.83852 1.01823 1.06970 2.47644 2.95344 3.19440 3.25074 3.29790 3.46071 3.87306 3.99828 4.18921 4.31255 4.38937 4.48832 4.64906 4.66564 4.78140 4.78296 4.85143 4.87527 4.97112 5.12224 5.17518 5.19290 5.21634 5.28615 5.31230 5.43555 5.45155 5.62946 5.65069 5.65716 5.69146 5.75487 5.78830 5.88778 5.94860 6.08187 6.16470 6.18767 6.20674 6.26224 6.34585 6.39223 6.58116 6.67464 7.12066 7.33554 7.53909 8.04080 8.08334 8.59868 9.16596 9.52290 10.04173 10.74611 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.016681 B = 0.001670 C = 0.001595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.124045 B =16764.758649 C =17550.069428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.036 4.036 3 H 0.088 0.912 4 C -0.135 4.135 5 C 0.514 3.486 6 O -0.533 6.533 7 N -0.722 5.722 8 C 0.114 3.886 9 C 0.010 3.990 10 N -0.449 5.449 11 C 0.013 3.987 12 C 0.442 3.558 13 O -0.577 6.577 14 N -0.564 5.564 15 C -0.300 4.300 16 H 0.102 0.898 17 C 0.022 3.978 18 N -0.902 5.902 19 Si 0.931 3.069 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.274 1.274 23 C -0.009 4.009 24 C -0.075 4.075 25 C -0.115 4.115 26 C -0.120 4.120 27 C -0.127 4.127 28 C -0.118 4.118 29 C -0.116 4.116 30 H 0.080 0.920 31 H 0.053 0.947 32 H 0.049 0.951 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.400 0.600 36 H 0.124 0.876 37 H 0.068 0.932 38 H 0.099 0.901 39 H 0.092 0.908 40 H 0.053 0.947 41 H 0.392 0.608 42 H 0.272 0.728 43 H 0.095 0.905 44 H 0.071 0.929 45 H 0.121 0.879 46 H 0.120 0.880 47 H 0.119 0.881 48 H 0.121 0.879 49 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.830 -12.033 -24.839 29.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.055 4.055 3 H 0.106 0.894 4 C -0.175 4.175 5 C 0.301 3.699 6 O -0.410 6.410 7 N -0.374 5.374 8 C 0.009 3.991 9 C -0.120 4.120 10 N -0.172 5.172 11 C -0.119 4.119 12 C 0.227 3.773 13 O -0.461 6.461 14 N -0.201 5.201 15 C -0.429 4.429 16 H 0.120 0.880 17 C -0.179 4.179 18 N -0.544 5.544 19 Si 0.758 3.242 20 H -0.199 1.199 21 H -0.210 1.210 22 H -0.199 1.199 23 C -0.139 4.139 24 C -0.075 4.075 25 C -0.133 4.133 26 C -0.138 4.138 27 C -0.145 4.145 28 C -0.137 4.137 29 C -0.134 4.134 30 H 0.099 0.901 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.112 0.888 34 H 0.113 0.887 35 H 0.234 0.766 36 H 0.142 0.858 37 H 0.086 0.914 38 H 0.117 0.883 39 H 0.110 0.890 40 H 0.071 0.929 41 H 0.225 0.775 42 H 0.082 0.918 43 H 0.114 0.886 44 H 0.089 0.911 45 H 0.139 0.861 46 H 0.138 0.862 47 H 0.137 0.863 48 H 0.139 0.861 49 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -10.674 -10.126 -24.611 28.674 hybrid contribution 1.691 -1.089 0.330 2.038 sum -8.983 -11.215 -24.282 28.215 Atomic orbital electron populations 1.21963 0.93584 1.01656 1.03377 1.19891 0.96816 0.99257 0.89542 0.89410 1.21775 1.03220 1.00135 0.92323 1.20672 0.78889 0.85706 0.84626 1.90693 1.39530 1.24263 1.86476 1.46121 1.57688 1.27677 1.05887 1.23126 0.99605 0.94126 0.82234 1.24297 0.95970 1.03166 0.88521 1.68379 1.20756 1.20315 1.07761 1.22450 0.94265 0.96930 0.98239 1.19671 0.83643 0.89738 0.84206 1.90534 1.70744 1.23880 1.60940 1.41854 1.28263 1.10482 1.39477 1.19658 1.10168 0.89870 1.23210 0.87972 1.25260 0.97898 0.97687 0.97071 1.69604 1.31446 1.19915 1.33416 0.85913 0.79070 0.80604 0.78613 1.19860 1.20968 1.19919 1.24435 1.01788 0.94629 0.93056 1.19915 0.97196 0.94176 0.96181 1.21016 1.00232 0.94342 0.97753 1.21147 0.98114 0.99883 0.94616 1.21154 0.98874 0.94935 0.99510 1.21165 0.99956 0.94967 0.97563 1.21137 0.97743 1.00074 0.94404 0.90127 0.92744 0.93168 0.88778 0.88676 0.76621 0.85809 0.91366 0.88282 0.89005 0.92859 0.77520 0.91829 0.88631 0.91093 0.86128 0.86177 0.86275 0.86120 0.85966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 8.75 37.16 0.33 -0.97 16 2 C -0.04 -0.30 2.21 -91.77 -0.20 -0.51 16 3 H 0.09 0.85 7.69 -51.93 -0.40 0.45 16 4 C -0.13 -1.00 4.91 -27.89 -0.14 -1.13 16 5 C 0.51 5.42 7.55 -10.99 -0.08 5.34 16 6 O -0.53 -7.63 13.57 5.55 0.08 -7.55 16 7 N -0.72 -6.86 5.36 -54.95 -0.29 -7.16 16 8 C 0.11 1.40 4.43 -69.63 -0.31 1.09 16 9 C 0.01 0.16 6.56 -2.77 -0.02 0.14 16 10 N -0.45 -7.37 5.95 -239.90 -1.43 -8.79 16 11 C 0.01 0.23 5.31 -4.97 -0.03 0.21 16 12 C 0.44 10.48 7.59 -10.98 -0.08 10.40 16 13 O -0.58 -15.82 15.13 5.55 0.08 -15.73 16 14 N -0.56 -14.29 5.29 -10.96 -0.06 -14.35 16 15 C -0.30 -8.38 9.68 -14.93 -0.14 -8.53 16 16 H 0.10 3.00 7.16 -52.49 -0.38 2.63 16 17 C 0.02 0.60 5.50 -17.46 -0.10 0.50 16 18 N -0.90 -24.47 13.05 55.50 0.72 -23.74 16 19 Si 0.93 21.13 29.55 -169.99 -5.02 16.10 16 20 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 21 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 22 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 23 C -0.01 -0.11 7.73 -2.77 -0.02 -0.13 16 24 C -0.07 -0.59 4.78 -104.63 -0.50 -1.09 16 25 C -0.12 -0.82 8.76 -39.58 -0.35 -1.17 16 26 C -0.12 -0.81 10.05 -39.59 -0.40 -1.21 16 27 C -0.13 -0.86 10.05 -39.59 -0.40 -1.26 16 28 C -0.12 -0.85 10.05 -39.58 -0.40 -1.25 16 29 C -0.12 -0.92 9.67 -39.59 -0.38 -1.30 16 30 H 0.08 0.87 5.95 -51.93 -0.31 0.56 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.05 0.37 7.40 -51.93 -0.38 -0.01 16 33 H 0.09 0.51 7.56 -51.93 -0.39 0.12 16 34 H 0.09 0.63 8.14 -51.92 -0.42 0.20 16 35 H 0.40 2.69 8.73 -40.82 -0.36 2.33 16 36 H 0.12 1.71 7.46 -51.93 -0.39 1.32 16 37 H 0.07 1.05 7.78 -51.93 -0.40 0.64 16 38 H 0.10 1.83 8.09 -51.93 -0.42 1.41 16 39 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 40 H 0.05 0.81 7.69 -51.93 -0.40 0.41 16 41 H 0.39 9.43 7.90 -40.82 -0.32 9.11 16 42 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 43 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.07 0.67 7.77 -51.93 -0.40 0.26 16 45 H 0.12 0.69 7.17 -52.48 -0.38 0.31 16 46 H 0.12 0.58 8.06 -52.49 -0.42 0.16 16 47 H 0.12 0.59 8.06 -52.48 -0.42 0.16 16 48 H 0.12 0.66 8.06 -52.49 -0.42 0.23 16 49 H 0.12 0.86 7.95 -52.49 -0.42 0.44 16 LS Contribution 404.12 15.07 6.09 6.09 Total: -1.00 -33.89 404.12 -10.49 -44.38 By element: Atomic # 1 Polarization: 19.06 SS G_CDS: -7.44 Total: 11.62 kcal Atomic # 6 Polarization: 2.36 SS G_CDS: -3.22 Total: -0.86 kcal Atomic # 7 Polarization: -52.99 SS G_CDS: -1.06 Total: -54.04 kcal Atomic # 8 Polarization: -23.45 SS G_CDS: 0.16 Total: -23.29 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -33.89 -10.49 -44.38 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732114941.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.935 kcal (2) G-P(sol) polarization free energy of solvation -33.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds