Wall clock time and date at job start Wed Apr 1 2020 04:43:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 5 5 C 1.50698 * 109.47721 * 295.00119 * 4 2 1 6 6 O 1.21287 * 119.99375 * 359.97438 * 5 4 2 7 7 N 1.34768 * 120.00550 * 180.02562 * 5 4 2 8 8 C 1.46504 * 119.99870 * 180.02562 * 7 5 4 9 9 C 1.53932 * 113.73278 * 251.72129 * 8 7 5 10 10 N 1.47956 * 86.18191 * 221.92409 * 9 8 7 11 11 C 1.46903 * 110.99917 * 137.58475 * 10 9 8 12 12 C 1.50708 * 109.47236 * 70.63992 * 11 10 9 13 13 O 1.21290 * 119.99703 * 0.02562 * 12 11 10 14 14 N 1.34774 * 119.99684 * 180.02562 * 12 11 10 15 15 C 1.37103 * 119.99216 * 179.97438 * 14 12 11 16 16 H 1.07992 * 120.00168 * 359.97438 * 15 14 12 17 17 C 1.38956 * 119.99501 * 180.02562 * 15 14 12 18 18 N 1.31415 * 119.99954 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 119.99918 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47587 * 59.99174 * 19 17 15 21 21 H 1.48505 * 109.47206 * 179.97438 * 19 17 15 22 22 H 1.48506 * 109.46586 * 299.99010 * 19 17 15 23 23 C 1.47958 * 90.76287 * 24.69151 * 10 9 8 24 24 C 1.50701 * 109.47419 * 239.99925 * 2 1 3 25 25 C 1.38236 * 119.99963 * 299.73020 * 24 2 1 26 26 C 1.38236 * 120.00036 * 179.81111 * 25 24 2 27 27 C 1.38226 * 119.99834 * 0.39071 * 26 25 24 28 28 C 1.38237 * 120.00085 * 359.86461 * 27 26 25 29 29 C 1.38229 * 120.00216 * 120.00264 * 24 2 1 30 30 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 31 31 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 32 32 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47325 * 55.00085 * 4 2 1 34 34 H 1.09008 * 109.47017 * 174.99994 * 4 2 1 35 35 H 0.97005 * 120.00103 * 359.97438 * 7 5 4 36 36 H 1.08996 * 112.94240 * 23.43115 * 8 7 5 37 37 H 1.09007 * 113.75920 * 336.24190 * 9 8 7 38 38 H 1.08998 * 113.75703 * 107.60404 * 9 8 7 39 39 H 1.08998 * 109.47271 * 190.63785 * 11 10 9 40 40 H 1.09000 * 109.47104 * 310.63770 * 11 10 9 41 41 H 0.96997 * 120.00647 * 359.97438 * 14 12 11 42 42 H 0.96999 * 119.99726 * 180.02562 * 18 17 15 43 43 H 1.09002 * 113.75678 * 220.99063 * 23 10 9 44 44 H 1.08995 * 113.75824 * 89.62962 * 23 10 9 45 45 H 1.08010 * 119.99941 * 359.97438 * 25 24 2 46 46 H 1.08001 * 119.99466 * 180.23187 * 26 25 24 47 47 H 1.08005 * 120.00406 * 179.83264 * 27 26 25 48 48 H 1.07998 * 120.00065 * 179.97438 * 28 27 26 49 49 H 1.08002 * 120.00084 * 359.97438 * 29 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6413 0.0570 2.4766 6 8 1.0117 1.0874 2.3632 7 7 1.9852 -0.3914 3.7001 8 6 1.5971 0.3650 4.8933 9 6 2.7736 1.0760 5.5859 10 7 2.1663 0.6278 6.8585 11 6 3.1928 0.1359 7.7872 12 6 4.0158 1.2955 8.2864 13 8 3.7710 2.4210 7.9063 14 7 5.0239 1.0818 9.1551 15 6 5.7728 2.1368 9.6088 16 1 5.5554 3.1388 9.2697 17 6 6.8125 1.9164 10.5040 18 7 7.0774 0.6970 10.9161 19 14 7.8326 3.3538 11.1228 20 1 6.9513 4.3195 11.8269 21 1 8.8707 2.8564 12.0610 22 1 8.4866 4.0280 9.9725 23 6 1.4959 -0.4948 6.1661 24 6 2.0324 -0.7104 -1.2304 25 6 1.7031 -2.0355 -1.4464 26 6 2.1607 -2.6860 -2.5770 27 6 2.9543 -2.0139 -3.4875 28 6 3.2880 -0.6903 -3.2690 29 6 2.8272 -0.0387 -2.1403 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6053 -1.7198 1.2952 34 1 3.1263 -0.7995 1.2056 35 1 2.4891 -1.2153 3.7908 36 1 0.7314 1.0060 4.7270 37 1 3.7435 0.6237 5.3788 38 1 2.7710 2.1582 5.4553 39 1 2.7122 -0.3585 8.6313 40 1 3.8399 -0.5733 7.2710 41 1 5.2194 0.1818 9.4593 42 1 7.8029 0.5433 11.5413 43 1 0.4725 -0.6678 6.4991 44 1 2.0921 -1.4065 6.1288 45 1 1.0861 -2.5618 -0.7330 46 1 1.9003 -3.7202 -2.7475 47 1 3.3141 -2.5228 -4.3696 48 1 3.9083 -0.1652 -3.9802 49 1 3.0878 0.9954 -1.9696 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732114941.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:45 Heat of formation + Delta-G solvation = -43.189680 kcal Electronic energy + Delta-G solvation = -28723.459709 eV Core-core repulsion = 24650.051563 eV Total energy + Delta-G solvation = -4073.408147 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.67368 -40.75594 -39.97644 -39.31140 -36.05445 -35.91430 -35.01232 -33.31245 -31.75661 -31.42301 -30.53985 -28.81236 -27.24612 -27.05521 -25.20654 -24.28888 -23.38534 -21.89872 -21.34466 -20.99992 -20.54284 -19.90685 -18.33609 -17.90572 -17.60093 -17.43143 -16.68360 -16.62582 -16.45293 -16.19836 -15.85891 -15.69503 -15.57018 -15.15184 -14.94007 -14.69455 -14.39771 -14.22595 -14.06794 -13.78413 -13.64188 -13.53650 -13.48566 -13.24797 -13.15497 -12.87348 -12.77421 -12.45860 -12.31731 -12.19888 -12.14451 -12.13086 -11.79904 -11.71776 -11.53636 -11.51376 -10.81703 -10.35870 -10.07767 -10.02809 -9.76887 -9.74142 -9.56435 -8.48308 -5.96912 0.48862 0.55172 1.38000 1.40147 1.50814 1.64333 2.03443 2.10572 2.28674 2.85604 2.93768 3.18035 3.22753 3.56486 3.62934 3.77890 3.83406 4.04420 4.10878 4.18031 4.21548 4.24668 4.27512 4.35393 4.38453 4.43539 4.52392 4.54207 4.66449 4.67182 4.70786 4.72069 4.83056 4.87133 4.96745 5.07601 5.17582 5.20618 5.26556 5.34213 5.37324 5.39673 5.51506 5.64569 5.68575 5.79085 5.86074 6.04765 6.17387 6.57573 6.58991 7.11319 7.29846 7.54341 8.10965 8.68717 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.016681 B = 0.001670 C = 0.001595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.124045 B =16764.758649 C =17550.069428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.033 4.033 3 H 0.064 0.936 4 C -0.125 4.125 5 C 0.511 3.489 6 O -0.576 6.576 7 N -0.709 5.709 8 C 0.130 3.870 9 C 0.004 3.996 10 N -0.482 5.482 11 C 0.027 3.973 12 C 0.437 3.563 13 O -0.622 6.622 14 N -0.572 5.572 15 C -0.336 4.336 16 H 0.075 0.925 17 C -0.011 4.011 18 N -0.918 5.918 19 Si 0.991 3.009 20 H -0.274 1.274 21 H -0.268 1.268 22 H -0.273 1.273 23 C 0.010 3.990 24 C -0.082 4.082 25 C -0.120 4.120 26 C -0.125 4.125 27 C -0.134 4.134 28 C -0.129 4.129 29 C -0.134 4.134 30 H 0.057 0.943 31 H 0.048 0.952 32 H 0.067 0.933 33 H 0.124 0.876 34 H 0.109 0.891 35 H 0.418 0.582 36 H 0.104 0.896 37 H 0.072 0.928 38 H 0.056 0.944 39 H 0.114 0.886 40 H 0.084 0.916 41 H 0.397 0.603 42 H 0.278 0.722 43 H 0.113 0.887 44 H 0.105 0.895 45 H 0.138 0.862 46 H 0.141 0.859 47 H 0.137 0.863 48 H 0.133 0.867 49 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.666 -15.174 -25.444 31.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.052 4.052 3 H 0.083 0.917 4 C -0.164 4.164 5 C 0.300 3.700 6 O -0.456 6.456 7 N -0.361 5.361 8 C 0.024 3.976 9 C -0.126 4.126 10 N -0.206 5.206 11 C -0.105 4.105 12 C 0.224 3.776 13 O -0.508 6.508 14 N -0.210 5.210 15 C -0.465 4.465 16 H 0.094 0.906 17 C -0.211 4.211 18 N -0.559 5.559 19 Si 0.815 3.185 20 H -0.199 1.199 21 H -0.192 1.192 22 H -0.198 1.198 23 C -0.119 4.119 24 C -0.082 4.082 25 C -0.137 4.137 26 C -0.143 4.143 27 C -0.152 4.152 28 C -0.147 4.147 29 C -0.152 4.152 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.086 0.914 33 H 0.142 0.858 34 H 0.127 0.873 35 H 0.255 0.745 36 H 0.122 0.878 37 H 0.090 0.910 38 H 0.074 0.926 39 H 0.132 0.868 40 H 0.102 0.898 41 H 0.231 0.769 42 H 0.088 0.912 43 H 0.131 0.869 44 H 0.123 0.877 45 H 0.156 0.844 46 H 0.159 0.841 47 H 0.155 0.845 48 H 0.151 0.849 49 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -10.499 -13.333 -25.217 30.395 hybrid contribution 1.606 -0.096 0.452 1.671 sum -8.893 -13.429 -24.765 29.542 Atomic orbital electron populations 1.21891 0.93920 1.02307 1.01951 1.19789 0.96485 0.98367 0.90569 0.91723 1.21774 1.04110 1.00660 0.89859 1.21275 0.77942 0.85251 0.85571 1.90691 1.41517 1.26312 1.87066 1.45947 1.57467 1.27893 1.04792 1.22694 0.97082 0.94096 0.83736 1.24231 0.97610 1.01041 0.89733 1.68338 1.20709 1.23346 1.08161 1.22353 0.94268 0.94318 0.99525 1.20845 0.83037 0.91046 0.82669 1.90509 1.71755 1.26484 1.62055 1.41912 1.28797 1.10101 1.40162 1.19597 1.12093 0.89763 1.25074 0.90649 1.26002 0.98240 1.00301 0.96531 1.69655 1.31749 1.21080 1.33380 0.85020 0.77710 0.77613 0.78174 1.19903 1.19233 1.19819 1.24486 1.02669 0.94128 0.90584 1.19874 0.97709 0.94733 0.95930 1.21228 1.00255 0.93906 0.98350 1.21461 0.97627 1.00908 0.94266 1.21461 0.98664 0.94816 1.00220 1.21389 1.00177 0.95519 0.97575 1.21286 0.98498 1.00330 0.95133 0.92432 0.93236 0.91391 0.85793 0.87329 0.74457 0.87755 0.91002 0.92569 0.86822 0.89798 0.76882 0.91235 0.86907 0.87713 0.84424 0.84118 0.84486 0.84927 0.86216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 8.75 71.98 0.63 -1.82 16 2 C -0.03 -0.54 2.21 -11.54 -0.03 -0.56 16 3 H 0.06 1.33 7.69 -2.39 -0.02 1.32 16 4 C -0.12 -1.60 4.91 29.85 0.15 -1.46 16 5 C 0.51 10.33 7.55 87.66 0.66 10.99 16 6 O -0.58 -17.01 13.57 -3.05 -0.04 -17.05 16 7 N -0.71 -12.09 5.36 -446.15 -2.39 -14.48 16 8 C 0.13 3.06 4.43 46.56 0.21 3.27 16 9 C 0.00 0.13 6.56 86.41 0.57 0.70 16 10 N -0.48 -15.31 5.95 -912.91 -5.43 -20.74 16 11 C 0.03 0.90 5.31 85.56 0.45 1.35 16 12 C 0.44 20.97 7.59 87.66 0.67 21.63 16 13 O -0.62 -35.45 15.13 -3.06 -0.05 -35.50 16 14 N -0.57 -29.39 5.29 -306.98 -1.62 -31.01 16 15 C -0.34 -19.25 9.68 84.04 0.81 -18.44 16 16 H 0.08 4.65 7.16 -2.91 -0.02 4.63 16 17 C -0.01 -0.57 5.50 84.93 0.47 -0.11 16 18 N -0.92 -49.21 13.05 21.67 0.28 -48.92 16 19 Si 0.99 43.23 29.55 68.60 2.03 45.25 16 20 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 21 H -0.27 -10.91 7.11 99.48 0.71 -10.21 16 22 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 23 C 0.01 0.20 7.73 86.41 0.67 0.86 16 24 C -0.08 -1.22 4.78 -19.87 -0.09 -1.32 16 25 C -0.12 -1.42 8.76 22.27 0.20 -1.23 16 26 C -0.12 -1.37 10.05 22.27 0.22 -1.15 16 27 C -0.13 -1.56 10.05 22.27 0.22 -1.34 16 28 C -0.13 -1.73 10.05 22.27 0.22 -1.51 16 29 C -0.13 -2.10 9.67 22.27 0.22 -1.89 16 30 H 0.06 1.27 5.95 -2.39 -0.01 1.26 16 31 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.07 0.88 7.40 -2.39 -0.02 0.87 16 33 H 0.12 0.89 7.56 -2.39 -0.02 0.87 16 34 H 0.11 1.17 8.14 -2.38 -0.02 1.15 16 35 H 0.42 4.14 8.73 -92.70 -0.81 3.33 16 36 H 0.10 2.93 7.46 -2.39 -0.02 2.91 16 37 H 0.07 2.18 7.78 -2.38 -0.02 2.17 16 38 H 0.06 2.24 8.09 -2.39 -0.02 2.22 16 39 H 0.11 3.30 8.14 -2.39 -0.02 3.29 16 40 H 0.08 2.28 7.69 -2.39 -0.02 2.27 16 41 H 0.40 19.10 7.90 -92.71 -0.73 18.37 16 42 H 0.28 13.97 8.31 -92.71 -0.77 13.20 16 43 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 44 H 0.10 1.42 7.77 -2.39 -0.02 1.40 16 45 H 0.14 1.09 7.17 -2.91 -0.02 1.07 16 46 H 0.14 0.91 8.06 -2.91 -0.02 0.89 16 47 H 0.14 1.03 8.06 -2.91 -0.02 1.00 16 48 H 0.13 1.34 8.06 -2.91 -0.02 1.31 16 49 H 0.12 1.80 7.95 -2.91 -0.02 1.77 16 Total: -1.00 -77.38 404.12 -1.55 -78.93 By element: Atomic # 1 Polarization: 36.10 SS G_CDS: -0.56 Total: 35.54 kcal Atomic # 6 Polarization: 1.75 SS G_CDS: 6.24 Total: 7.99 kcal Atomic # 7 Polarization: -106.00 SS G_CDS: -9.16 Total: -115.16 kcal Atomic # 8 Polarization: -52.46 SS G_CDS: -0.09 Total: -52.55 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.25 kcal Total: -77.38 -1.55 -78.93 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732114941.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.743 kcal (2) G-P(sol) polarization free energy of solvation -77.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds