Wall clock time and date at job start Wed Apr 1 2020 03:24:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 N 1.46506 * 109.47289 * 119.99984 * 2 1 3 5 5 C 1.36929 * 119.99904 * 275.00051 * 4 2 1 6 6 H 1.08004 * 120.00323 * 359.97438 * 5 4 2 7 7 C 1.38815 * 119.99984 * 179.97438 * 5 4 2 8 8 N 1.31622 * 119.99951 * 179.97438 * 7 5 4 9 9 Si 1.86794 * 120.00021 * 0.02562 * 7 5 4 10 10 H 1.48503 * 109.47254 * 89.99741 * 9 7 5 11 11 H 1.48501 * 109.47458 * 209.99436 * 9 7 5 12 12 H 1.48498 * 109.47288 * 329.99773 * 9 7 5 13 13 C 1.50699 * 109.47078 * 239.99821 * 2 1 3 14 14 C 1.38238 * 120.00032 * 279.72733 * 13 2 1 15 15 C 1.38234 * 119.99944 * 179.78828 * 14 13 2 16 16 C 1.38237 * 120.00286 * 0.44140 * 15 14 13 17 17 C 1.50694 * 120.00604 * 179.83660 * 16 15 14 18 18 N 1.46507 * 109.47047 * 269.98014 * 17 16 15 19 19 C 1.34775 * 120.00109 * 179.97438 * 18 17 16 20 20 O 1.21282 * 119.99709 * 359.97438 * 19 18 17 21 21 C 1.50698 * 120.00014 * 179.97438 * 19 18 17 22 22 C 1.52993 * 110.43462 * 61.08531 * 21 19 18 23 23 C 1.54629 * 110.48709 * 183.77150 * 21 19 18 24 24 C 1.54474 * 101.76621 * 93.87545 * 23 21 19 25 25 N 1.46766 * 105.47313 * 25.42084 * 24 23 21 26 26 C 1.34416 * 111.30021 * 342.97997 * 25 24 23 27 27 O 1.21282 * 124.94548 * 180.45116 * 26 25 24 28 28 C 1.38239 * 119.99466 * 359.81301 * 16 15 14 29 29 C 1.38230 * 120.00070 * 359.97438 * 28 16 15 30 30 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 31 31 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 32 32 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 33 33 H 0.97000 * 120.00117 * 94.99845 * 4 2 1 34 34 H 0.97000 * 120.00124 * 179.97438 * 8 7 5 35 35 H 1.07995 * 120.00155 * 359.97438 * 14 13 2 36 36 H 1.08002 * 119.99978 * 180.27638 * 15 14 13 37 37 H 1.08998 * 109.46964 * 29.97124 * 17 16 15 38 38 H 1.08995 * 109.47475 * 149.97644 * 17 16 15 39 39 H 0.96995 * 119.99880 * 359.97438 * 18 17 16 40 40 H 1.09001 * 109.47256 * 60.70175 * 22 21 19 41 41 H 1.09002 * 109.47212 * 180.70154 * 22 21 19 42 42 H 1.08999 * 109.47329 * 300.70082 * 22 21 19 43 43 H 1.08996 * 110.97231 * 211.99804 * 23 21 19 44 44 H 1.09002 * 110.96492 * 335.76081 * 23 21 19 45 45 H 1.09004 * 110.25105 * 266.41346 * 24 23 21 46 46 H 1.09007 * 110.31894 * 144.45287 * 24 23 21 47 47 H 0.96996 * 124.34995 * 162.96138 * 25 24 23 48 48 H 1.08006 * 119.99654 * 179.97438 * 28 16 15 49 49 H 1.08002 * 119.99994 * 180.02562 * 29 28 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1491 -0.0075 2.3757 6 1 1.8927 1.0405 2.4241 7 6 2.6114 -0.6620 3.5093 8 7 2.7376 -0.0052 4.6429 9 14 3.0557 -2.4744 3.4254 10 1 4.4886 -2.6165 3.0621 11 1 2.8157 -3.1047 4.7484 12 1 2.2161 -3.1429 2.3990 13 6 2.0323 -0.7104 -1.2304 14 6 2.0720 -2.0919 -1.2632 15 6 2.5286 -2.7436 -2.3935 16 6 2.9542 -2.0139 -3.4877 17 6 3.4555 -2.7242 -4.7185 18 7 4.9010 -2.9351 -4.6060 19 6 5.5704 -3.5567 -5.5969 20 8 4.9762 -3.9420 -6.5814 21 6 7.0573 -3.7731 -5.4814 22 6 7.3775 -4.6443 -4.2652 23 6 7.6125 -4.4167 -6.7731 24 6 8.0641 -3.1758 -7.5745 25 7 8.3380 -2.1402 -6.5712 26 6 7.7796 -2.4471 -5.3877 27 8 7.8447 -1.7606 -4.3900 28 6 2.9194 -0.6323 -3.4529 29 6 2.4587 0.0193 -2.3243 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 2.2491 -1.6318 1.1527 34 1 3.0602 -0.4626 5.4351 35 1 1.7434 -2.6620 -0.4068 36 1 2.5555 -3.8229 -2.4207 37 1 2.9541 -3.6875 -4.8116 38 1 3.2442 -2.1180 -5.5993 39 1 5.3761 -2.6273 -3.8184 40 1 6.8958 -5.6157 -4.3772 41 1 8.4563 -4.7803 -4.1895 42 1 7.0084 -4.1577 -3.3624 43 1 8.4585 -5.0675 -6.5522 44 1 6.8317 -4.9612 -7.3042 45 1 7.2692 -2.8502 -8.2455 46 1 8.9676 -3.3997 -8.1417 47 1 8.8557 -1.3375 -6.7404 48 1 3.2523 -0.0622 -4.3077 49 1 2.4311 1.0986 -2.2973 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733682919.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:57 Heat of formation + Delta-G solvation = -35.711040 kcal Electronic energy + Delta-G solvation = -29933.151346 eV Core-core repulsion = 25860.067497 eV Total energy + Delta-G solvation = -4073.083848 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.61470 -39.69460 -38.97733 -36.84798 -36.08995 -34.70015 -33.65492 -32.30023 -30.88036 -30.54926 -29.27430 -28.77005 -26.45283 -25.68346 -23.77474 -22.93370 -22.61456 -22.00585 -21.49254 -19.97099 -19.67182 -18.10454 -17.92670 -17.72022 -16.44022 -16.00514 -15.96943 -15.43768 -15.31411 -14.86520 -14.77650 -14.41116 -14.21037 -14.14722 -13.98755 -13.78772 -13.33063 -13.28617 -13.11481 -12.88669 -12.81818 -12.65389 -12.53737 -12.35839 -12.25635 -11.90966 -11.75456 -11.62708 -11.38653 -11.07734 -10.90880 -10.67118 -10.46237 -10.34273 -10.09521 -10.06000 -9.60144 -9.59322 -9.36325 -9.00663 -8.76609 -8.44735 -7.30885 -5.78615 -3.14307 1.33362 1.56266 1.91835 2.27684 2.82271 3.02951 3.35294 3.38959 3.44177 3.70201 3.88763 3.94343 4.21200 4.44471 4.52537 4.57494 4.62964 4.80159 4.86777 5.01889 5.09370 5.14850 5.18759 5.22824 5.25227 5.38104 5.42463 5.47454 5.51876 5.54413 5.63689 5.66177 5.81456 5.92264 6.09329 6.13187 6.19835 6.22182 6.24715 6.35071 6.48480 6.51877 6.60923 6.63092 6.86446 7.02366 7.13952 7.18899 7.73362 7.82722 7.96804 8.40128 9.17755 9.90183 10.09600 11.39597 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013863 B = 0.002479 C = 0.002306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2019.335849 B =11293.477628 C =12139.137766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.209 3.791 3 H 0.065 0.935 4 N -0.745 5.745 5 C -0.243 4.243 6 H 0.092 0.908 7 C 0.006 3.994 8 N -0.933 5.933 9 Si 0.882 3.118 10 H -0.283 1.283 11 H -0.290 1.290 12 H -0.278 1.278 13 C -0.054 4.054 14 C -0.115 4.115 15 C -0.098 4.098 16 C -0.131 4.131 17 C 0.167 3.833 18 N -0.714 5.714 19 C 0.535 3.465 20 O -0.534 6.534 21 C -0.120 4.120 22 C -0.130 4.130 23 C -0.118 4.118 24 C 0.099 3.901 25 N -0.728 5.728 26 C 0.529 3.471 27 O -0.512 6.512 28 C -0.097 4.097 29 C -0.117 4.117 30 H 0.041 0.959 31 H 0.062 0.938 32 H 0.047 0.953 33 H 0.362 0.638 34 H 0.260 0.740 35 H 0.123 0.877 36 H 0.119 0.881 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.410 0.590 40 H 0.074 0.926 41 H 0.073 0.927 42 H 0.074 0.926 43 H 0.091 0.909 44 H 0.110 0.890 45 H 0.077 0.923 46 H 0.085 0.915 47 H 0.414 0.586 48 H 0.118 0.882 49 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.846 -9.097 -27.780 30.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.100 3.900 3 H 0.083 0.917 4 N -0.389 5.389 5 C -0.373 4.373 6 H 0.109 0.891 7 C -0.190 4.190 8 N -0.580 5.580 9 Si 0.712 3.288 10 H -0.210 1.210 11 H -0.217 1.217 12 H -0.204 1.204 13 C -0.055 4.055 14 C -0.133 4.133 15 C -0.116 4.116 16 C -0.131 4.131 17 C 0.044 3.956 18 N -0.365 5.365 19 C 0.319 3.681 20 O -0.411 6.411 21 C -0.127 4.127 22 C -0.188 4.188 23 C -0.155 4.155 24 C -0.026 4.026 25 N -0.384 5.384 26 C 0.313 3.687 27 O -0.387 6.387 28 C -0.116 4.116 29 C -0.136 4.136 30 H 0.060 0.940 31 H 0.081 0.919 32 H 0.066 0.934 33 H 0.196 0.804 34 H 0.070 0.930 35 H 0.141 0.859 36 H 0.137 0.863 37 H 0.095 0.905 38 H 0.093 0.907 39 H 0.246 0.754 40 H 0.093 0.907 41 H 0.092 0.908 42 H 0.093 0.907 43 H 0.110 0.890 44 H 0.129 0.871 45 H 0.095 0.905 46 H 0.103 0.897 47 H 0.253 0.747 48 H 0.136 0.864 49 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 8.376 -8.919 -27.728 30.307 hybrid contribution 0.823 -0.790 0.397 1.208 sum 9.199 -9.709 -27.330 30.427 Atomic orbital electron populations 1.22387 0.97682 1.01187 1.00704 1.19224 0.92325 0.95289 0.83161 0.91667 1.42865 1.79871 1.09380 1.06790 1.19064 1.37076 0.95643 0.85518 0.89052 1.24652 1.01322 0.97469 0.95561 1.69696 1.52505 1.35541 1.00269 0.86592 0.78583 0.86804 0.76801 1.20954 1.21660 1.20421 1.20548 0.95224 0.93959 0.95815 1.21035 0.99959 0.94475 0.97822 1.20992 0.98408 0.99462 0.92784 1.19636 1.03933 0.93922 0.95628 1.20190 0.79500 1.00147 0.95736 1.46175 1.09262 1.58865 1.22247 1.19688 0.87743 0.77774 0.82897 1.90693 1.69142 1.50588 1.30680 1.21641 0.93788 0.96753 1.00504 1.21699 1.03115 0.99059 0.94941 1.22716 1.02368 0.97150 0.93315 1.22149 1.01729 0.87435 0.91242 1.46152 1.55336 1.25175 1.11744 1.20333 0.78681 0.86540 0.83133 1.90824 1.60274 1.55114 1.32463 1.20958 0.98992 0.93481 0.98127 1.21036 0.99551 1.00022 0.92966 0.93969 0.91884 0.93427 0.80443 0.93018 0.85873 0.86264 0.90509 0.90727 0.75366 0.90654 0.90830 0.90734 0.89022 0.87138 0.90456 0.89702 0.74679 0.86364 0.85783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.79 9.47 37.16 0.35 -2.43 16 2 C 0.21 4.02 3.09 -69.08 -0.21 3.80 16 3 H 0.07 1.28 7.94 -51.93 -0.41 0.87 16 4 N -0.75 -17.54 4.87 -54.55 -0.27 -17.80 16 5 C -0.24 -6.81 10.41 -15.06 -0.16 -6.97 16 6 H 0.09 2.72 8.06 -52.48 -0.42 2.30 16 7 C 0.01 0.17 5.50 -17.43 -0.10 0.08 16 8 N -0.93 -29.27 13.97 55.49 0.78 -28.49 16 9 Si 0.88 22.15 27.74 -169.99 -4.71 17.43 16 10 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 11 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 12 H -0.28 -6.51 6.52 56.52 0.37 -6.14 16 13 C -0.05 -0.90 4.96 -104.62 -0.52 -1.42 16 14 C -0.11 -1.81 9.06 -39.58 -0.36 -2.17 16 15 C -0.10 -1.30 9.70 -39.58 -0.38 -1.68 16 16 C -0.13 -1.60 5.25 -104.62 -0.55 -2.15 16 17 C 0.17 1.80 5.80 -5.19 -0.03 1.77 16 18 N -0.71 -7.79 5.40 -61.47 -0.33 -8.12 16 19 C 0.53 5.79 6.55 -10.99 -0.07 5.72 16 20 O -0.53 -6.84 15.46 5.56 0.09 -6.76 16 21 C -0.12 -1.03 0.74 -155.67 -0.12 -1.14 16 22 C -0.13 -0.98 8.33 37.15 0.31 -0.67 16 23 C -0.12 -0.68 6.05 -25.10 -0.15 -0.83 16 24 C 0.10 0.49 7.78 -3.12 -0.02 0.47 16 25 N -0.73 -5.14 6.24 -59.20 -0.37 -5.51 16 26 C 0.53 5.39 7.08 -10.86 -0.08 5.31 16 27 O -0.51 -7.14 17.69 5.56 0.10 -7.04 16 28 C -0.10 -1.23 9.70 -39.58 -0.38 -1.61 16 29 C -0.12 -1.68 9.67 -39.59 -0.38 -2.06 16 30 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.36 8.37 3.91 -40.82 -0.16 8.21 16 34 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 35 H 0.12 2.03 6.90 -52.49 -0.36 1.67 16 36 H 0.12 1.35 8.06 -52.49 -0.42 0.92 16 37 H 0.08 0.80 8.09 -51.93 -0.42 0.38 16 38 H 0.07 0.80 8.09 -51.93 -0.42 0.38 16 39 H 0.41 4.68 7.80 -40.82 -0.32 4.36 16 40 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.07 0.65 7.70 -51.93 -0.40 0.25 16 43 H 0.09 0.35 7.92 -51.93 -0.41 -0.06 16 44 H 0.11 0.71 6.91 -51.93 -0.36 0.35 16 45 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.08 0.21 8.14 -51.93 -0.42 -0.22 16 47 H 0.41 2.29 8.96 -40.82 -0.37 1.92 16 48 H 0.12 1.28 8.06 -52.48 -0.42 0.86 16 49 H 0.12 1.60 8.04 -52.49 -0.42 1.17 16 LS Contribution 402.98 15.07 6.07 6.07 Total: -1.00 -34.81 402.98 -8.95 -43.76 By element: Atomic # 1 Polarization: 19.90 SS G_CDS: -7.45 Total: 12.45 kcal Atomic # 6 Polarization: -3.15 SS G_CDS: -2.85 Total: -6.00 kcal Atomic # 7 Polarization: -59.73 SS G_CDS: -0.19 Total: -59.92 kcal Atomic # 8 Polarization: -13.98 SS G_CDS: 0.18 Total: -13.80 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -4.71 Total: 17.43 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -34.81 -8.95 -43.76 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733682919.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.051 kcal (2) G-P(sol) polarization free energy of solvation -34.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds