Wall clock time and date at job start Wed Apr 1 2020 03:24:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 N 1.46506 * 109.47289 * 119.99984 * 2 1 3 5 5 C 1.36929 * 119.99904 * 275.00051 * 4 2 1 6 6 H 1.08004 * 120.00323 * 359.97438 * 5 4 2 7 7 C 1.38815 * 119.99984 * 179.97438 * 5 4 2 8 8 N 1.31622 * 119.99951 * 179.97438 * 7 5 4 9 9 Si 1.86794 * 120.00021 * 0.02562 * 7 5 4 10 10 H 1.48503 * 109.47254 * 89.99741 * 9 7 5 11 11 H 1.48501 * 109.47458 * 209.99436 * 9 7 5 12 12 H 1.48498 * 109.47288 * 329.99773 * 9 7 5 13 13 C 1.50699 * 109.47078 * 239.99821 * 2 1 3 14 14 C 1.38238 * 120.00032 * 279.72733 * 13 2 1 15 15 C 1.38234 * 119.99944 * 179.78828 * 14 13 2 16 16 C 1.38237 * 120.00286 * 0.44140 * 15 14 13 17 17 C 1.50694 * 120.00604 * 179.83660 * 16 15 14 18 18 N 1.46507 * 109.47047 * 269.98014 * 17 16 15 19 19 C 1.34775 * 120.00109 * 179.97438 * 18 17 16 20 20 O 1.21282 * 119.99709 * 359.97438 * 19 18 17 21 21 C 1.50698 * 120.00014 * 179.97438 * 19 18 17 22 22 C 1.52993 * 110.43462 * 61.08531 * 21 19 18 23 23 C 1.54629 * 110.48709 * 183.77150 * 21 19 18 24 24 C 1.54474 * 101.76621 * 93.87545 * 23 21 19 25 25 N 1.46766 * 105.47313 * 25.42084 * 24 23 21 26 26 C 1.34416 * 111.30021 * 342.97997 * 25 24 23 27 27 O 1.21282 * 124.94548 * 180.45116 * 26 25 24 28 28 C 1.38239 * 119.99466 * 359.81301 * 16 15 14 29 29 C 1.38230 * 120.00070 * 359.97438 * 28 16 15 30 30 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 31 31 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 32 32 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 33 33 H 0.97000 * 120.00117 * 94.99845 * 4 2 1 34 34 H 0.97000 * 120.00124 * 179.97438 * 8 7 5 35 35 H 1.07995 * 120.00155 * 359.97438 * 14 13 2 36 36 H 1.08002 * 119.99978 * 180.27638 * 15 14 13 37 37 H 1.08998 * 109.46964 * 29.97124 * 17 16 15 38 38 H 1.08995 * 109.47475 * 149.97644 * 17 16 15 39 39 H 0.96995 * 119.99880 * 359.97438 * 18 17 16 40 40 H 1.09001 * 109.47256 * 60.70175 * 22 21 19 41 41 H 1.09002 * 109.47212 * 180.70154 * 22 21 19 42 42 H 1.08999 * 109.47329 * 300.70082 * 22 21 19 43 43 H 1.08996 * 110.97231 * 211.99804 * 23 21 19 44 44 H 1.09002 * 110.96492 * 335.76081 * 23 21 19 45 45 H 1.09004 * 110.25105 * 266.41346 * 24 23 21 46 46 H 1.09007 * 110.31894 * 144.45287 * 24 23 21 47 47 H 0.96996 * 124.34995 * 162.96138 * 25 24 23 48 48 H 1.08006 * 119.99654 * 179.97438 * 28 16 15 49 49 H 1.08002 * 119.99994 * 180.02562 * 29 28 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1491 -0.0075 2.3757 6 1 1.8927 1.0405 2.4241 7 6 2.6114 -0.6620 3.5093 8 7 2.7376 -0.0052 4.6429 9 14 3.0557 -2.4744 3.4254 10 1 4.4886 -2.6165 3.0621 11 1 2.8157 -3.1047 4.7484 12 1 2.2161 -3.1429 2.3990 13 6 2.0323 -0.7104 -1.2304 14 6 2.0720 -2.0919 -1.2632 15 6 2.5286 -2.7436 -2.3935 16 6 2.9542 -2.0139 -3.4877 17 6 3.4555 -2.7242 -4.7185 18 7 4.9010 -2.9351 -4.6060 19 6 5.5704 -3.5567 -5.5969 20 8 4.9762 -3.9420 -6.5814 21 6 7.0573 -3.7731 -5.4814 22 6 7.3775 -4.6443 -4.2652 23 6 7.6125 -4.4167 -6.7731 24 6 8.0641 -3.1758 -7.5745 25 7 8.3380 -2.1402 -6.5712 26 6 7.7796 -2.4471 -5.3877 27 8 7.8447 -1.7606 -4.3900 28 6 2.9194 -0.6323 -3.4529 29 6 2.4587 0.0193 -2.3243 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 2.2491 -1.6318 1.1527 34 1 3.0602 -0.4626 5.4351 35 1 1.7434 -2.6620 -0.4068 36 1 2.5555 -3.8229 -2.4207 37 1 2.9541 -3.6875 -4.8116 38 1 3.2442 -2.1180 -5.5993 39 1 5.3761 -2.6273 -3.8184 40 1 6.8958 -5.6157 -4.3772 41 1 8.4563 -4.7803 -4.1895 42 1 7.0084 -4.1577 -3.3624 43 1 8.4585 -5.0675 -6.5522 44 1 6.8317 -4.9612 -7.3042 45 1 7.2692 -2.8502 -8.2455 46 1 8.9676 -3.3997 -8.1417 47 1 8.8557 -1.3375 -6.7404 48 1 3.2523 -0.0622 -4.3077 49 1 2.4311 1.0986 -2.2973 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733682919.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:55 Heat of formation + Delta-G solvation = -61.000660 kcal Electronic energy + Delta-G solvation = -29934.247986 eV Core-core repulsion = 25860.067497 eV Total energy + Delta-G solvation = -4074.180489 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.31793 -40.75405 -39.89417 -37.75020 -37.35795 -35.84264 -34.44223 -34.02311 -32.18494 -31.81441 -30.47871 -29.68128 -27.40719 -26.41244 -25.59325 -24.00342 -23.50718 -22.78429 -22.58234 -21.25198 -20.56950 -19.95203 -18.76724 -18.38082 -17.45128 -17.07424 -16.96361 -16.57939 -16.39289 -16.09472 -15.75902 -15.56515 -15.29068 -14.98190 -14.85750 -14.76920 -14.68017 -14.55505 -14.29267 -13.96670 -13.88985 -13.74952 -13.48892 -13.37904 -13.24569 -13.12785 -12.96528 -12.76198 -12.50426 -12.32365 -12.17838 -12.11787 -11.97196 -11.75179 -11.59751 -11.24040 -11.06520 -10.88941 -10.23179 -10.17274 -9.85641 -9.63324 -9.34118 -8.03674 -5.36971 0.23397 0.46812 1.13988 1.33982 1.38469 1.44727 1.48963 2.11361 2.34453 2.46414 2.85694 3.12148 3.28017 3.34120 3.53601 3.59992 3.64480 3.86077 3.87066 3.93571 4.06036 4.09099 4.28491 4.37239 4.48412 4.53300 4.60236 4.63577 4.68401 4.68898 4.73594 4.74495 4.93219 4.99611 5.01783 5.05101 5.06671 5.11204 5.17120 5.26014 5.36338 5.49142 5.56836 5.68628 5.70064 5.78934 5.88524 6.02771 6.20849 6.32177 6.97297 7.05690 7.09215 7.80979 8.00632 9.17830 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013863 B = 0.002479 C = 0.002306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2019.335849 B =11293.477628 C =12139.137766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.204 3.796 3 H 0.054 0.946 4 N -0.749 5.749 5 C -0.228 4.228 6 H 0.059 0.941 7 C -0.063 4.063 8 N -0.983 5.983 9 Si 0.949 3.051 10 H -0.280 1.280 11 H -0.294 1.294 12 H -0.251 1.251 13 C -0.074 4.074 14 C -0.129 4.129 15 C -0.094 4.094 16 C -0.118 4.118 17 C 0.170 3.830 18 N -0.715 5.715 19 C 0.534 3.466 20 O -0.555 6.555 21 C -0.119 4.119 22 C -0.130 4.130 23 C -0.113 4.113 24 C 0.097 3.903 25 N -0.718 5.718 26 C 0.522 3.478 27 O -0.559 6.559 28 C -0.094 4.094 29 C -0.121 4.121 30 H 0.071 0.929 31 H 0.040 0.960 32 H 0.050 0.950 33 H 0.365 0.635 34 H 0.258 0.742 35 H 0.113 0.887 36 H 0.141 0.859 37 H 0.084 0.916 38 H 0.080 0.920 39 H 0.408 0.592 40 H 0.087 0.913 41 H 0.085 0.915 42 H 0.058 0.942 43 H 0.116 0.884 44 H 0.106 0.894 45 H 0.075 0.925 46 H 0.119 0.881 47 H 0.421 0.579 48 H 0.140 0.860 49 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.825 -11.322 -31.267 34.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.096 3.904 3 H 0.072 0.928 4 N -0.393 5.393 5 C -0.358 4.358 6 H 0.077 0.923 7 C -0.255 4.255 8 N -0.634 5.634 9 Si 0.776 3.224 10 H -0.207 1.207 11 H -0.221 1.221 12 H -0.176 1.176 13 C -0.075 4.075 14 C -0.147 4.147 15 C -0.113 4.113 16 C -0.119 4.119 17 C 0.048 3.952 18 N -0.366 5.366 19 C 0.319 3.681 20 O -0.433 6.433 21 C -0.126 4.126 22 C -0.188 4.188 23 C -0.151 4.151 24 C -0.027 4.027 25 N -0.373 5.373 26 C 0.306 3.694 27 O -0.438 6.438 28 C -0.112 4.112 29 C -0.140 4.140 30 H 0.090 0.910 31 H 0.059 0.941 32 H 0.069 0.931 33 H 0.200 0.800 34 H 0.066 0.934 35 H 0.131 0.869 36 H 0.159 0.841 37 H 0.102 0.898 38 H 0.098 0.902 39 H 0.244 0.756 40 H 0.106 0.894 41 H 0.104 0.896 42 H 0.077 0.923 43 H 0.134 0.866 44 H 0.125 0.875 45 H 0.093 0.907 46 H 0.137 0.863 47 H 0.261 0.739 48 H 0.158 0.842 49 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 9.340 -11.149 -31.318 34.531 hybrid contribution 0.512 -0.006 1.309 1.405 sum 9.852 -11.156 -30.009 33.497 Atomic orbital electron populations 1.22234 0.96210 1.01459 1.01027 1.19360 0.93293 0.94727 0.82993 0.92818 1.42870 1.80121 1.09562 1.06757 1.19029 1.35062 0.94527 0.87231 0.92269 1.25452 1.02392 1.02427 0.95209 1.69874 1.54715 1.37634 1.01152 0.85503 0.78592 0.81129 0.77177 1.20662 1.22051 1.17575 1.20277 0.97478 0.94411 0.95342 1.21025 1.01051 0.94134 0.98534 1.21178 0.97461 1.00611 0.92014 1.19798 1.02471 0.93864 0.95729 1.20173 0.79614 1.00441 0.94984 1.46200 1.09249 1.58825 1.22300 1.20043 0.88646 0.77085 0.82314 1.90683 1.69848 1.51449 1.31339 1.21691 0.92034 0.96426 1.02422 1.21726 1.04016 0.99201 0.93823 1.22799 1.02980 0.97615 0.91696 1.22361 1.03316 0.86343 0.90656 1.46230 1.54074 1.25711 1.11248 1.20643 0.78738 0.86784 0.83241 1.90795 1.62208 1.56543 1.34235 1.21205 0.97998 0.93892 0.98137 1.21172 0.99279 1.00656 0.92848 0.91016 0.94120 0.93128 0.80034 0.93356 0.86918 0.84139 0.89763 0.90224 0.75607 0.89403 0.89618 0.92337 0.86553 0.87538 0.90676 0.86310 0.73896 0.84205 0.84753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.18 9.47 71.98 0.68 -4.50 16 2 C 0.20 7.86 3.09 44.24 0.14 7.99 16 3 H 0.05 2.17 7.94 -2.39 -0.02 2.15 16 4 N -0.75 -35.47 4.87 -326.50 -1.59 -37.06 16 5 C -0.23 -13.12 10.41 84.04 0.87 -12.24 16 6 H 0.06 3.72 8.06 -2.91 -0.02 3.69 16 7 C -0.06 -3.80 5.50 84.86 0.47 -3.33 16 8 N -0.98 -63.83 13.97 21.65 0.30 -63.53 16 9 Si 0.95 46.20 27.74 68.60 1.90 48.10 16 10 H -0.28 -13.45 7.11 99.48 0.71 -12.75 16 11 H -0.29 -14.41 7.11 99.48 0.71 -13.70 16 12 H -0.25 -10.97 6.52 99.48 0.65 -10.32 16 13 C -0.07 -2.38 4.96 -19.87 -0.10 -2.48 16 14 C -0.13 -3.89 9.06 22.27 0.20 -3.69 16 15 C -0.09 -2.28 9.70 22.27 0.22 -2.06 16 16 C -0.12 -2.60 5.25 -19.87 -0.10 -2.71 16 17 C 0.17 3.26 5.80 85.63 0.50 3.75 16 18 N -0.72 -14.28 5.40 -466.79 -2.52 -16.80 16 19 C 0.53 10.55 6.55 87.66 0.57 11.13 16 20 O -0.55 -13.08 15.46 -3.04 -0.05 -13.13 16 21 C -0.12 -1.80 0.74 -52.94 -0.04 -1.84 16 22 C -0.13 -1.71 8.33 71.98 0.60 -1.12 16 23 C -0.11 -0.97 6.05 31.65 0.19 -0.78 16 24 C 0.10 0.66 7.78 86.83 0.68 1.33 16 25 N -0.72 -8.58 6.24 -459.80 -2.87 -11.45 16 26 C 0.52 9.88 7.08 87.90 0.62 10.50 16 27 O -0.56 -15.37 17.69 -3.04 -0.05 -15.43 16 28 C -0.09 -2.16 9.70 22.27 0.22 -1.94 16 29 C -0.12 -3.29 9.67 22.27 0.22 -3.07 16 30 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.05 1.70 8.14 -2.38 -0.02 1.68 16 33 H 0.37 16.66 3.91 -92.71 -0.36 16.29 16 34 H 0.26 15.94 8.31 -92.71 -0.77 15.17 16 35 H 0.11 3.59 6.90 -2.91 -0.02 3.57 16 36 H 0.14 2.76 8.06 -2.91 -0.02 2.74 16 37 H 0.08 1.53 8.09 -2.39 -0.02 1.51 16 38 H 0.08 1.48 8.09 -2.39 -0.02 1.46 16 39 H 0.41 8.76 7.80 -92.71 -0.72 8.04 16 40 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 42 H 0.06 0.96 7.70 -2.39 -0.02 0.95 16 43 H 0.12 0.44 7.92 -2.39 -0.02 0.42 16 44 H 0.11 1.08 6.91 -2.39 -0.02 1.06 16 45 H 0.07 0.60 8.14 -2.38 -0.02 0.58 16 46 H 0.12 0.07 8.14 -2.38 -0.02 0.05 16 47 H 0.42 3.84 8.96 -92.71 -0.83 3.01 16 48 H 0.14 2.61 8.06 -2.91 -0.02 2.59 16 49 H 0.13 3.28 8.04 -2.91 -0.02 3.25 16 Total: -1.00 -77.63 402.98 0.06 -77.57 By element: Atomic # 1 Polarization: 37.77 SS G_CDS: -0.99 Total: 36.78 kcal Atomic # 6 Polarization: -10.98 SS G_CDS: 5.93 Total: -5.06 kcal Atomic # 7 Polarization: -122.16 SS G_CDS: -6.68 Total: -128.84 kcal Atomic # 8 Polarization: -28.46 SS G_CDS: -0.10 Total: -28.56 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 1.90 Total: 48.10 kcal Total: -77.63 0.06 -77.57 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733682919.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.571 kcal (2) G-P(sol) polarization free energy of solvation -77.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds