Wall clock time and date at job start Wed Apr 1 2020 03:25:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.46720 * 2 1 4 4 N 1.46496 * 109.47396 * 120.00214 * 2 1 3 5 5 C 1.36939 * 119.99930 * 275.00282 * 4 2 1 6 6 H 1.07994 * 120.00104 * 359.97438 * 5 4 2 7 7 C 1.38810 * 119.99907 * 179.97438 * 5 4 2 8 8 N 1.31622 * 119.99948 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00270 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46731 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.47175 * 119.99684 * 9 7 5 12 12 H 1.48500 * 109.47359 * 240.00199 * 9 7 5 13 13 C 1.50702 * 109.46902 * 240.00758 * 2 1 3 14 14 C 1.38234 * 120.00257 * 100.00003 * 13 2 1 15 15 C 1.38238 * 119.99675 * 180.25732 * 14 13 2 16 16 C 1.38228 * 120.00110 * 359.52133 * 15 14 13 17 17 C 1.50706 * 119.99983 * 180.21781 * 16 15 14 18 18 N 1.46501 * 109.46739 * 270.21443 * 17 16 15 19 19 C 1.34780 * 119.99643 * 180.02562 * 18 17 16 20 20 O 1.21285 * 120.00073 * 359.97438 * 19 18 17 21 21 C 1.50701 * 120.00276 * 180.02562 * 19 18 17 22 22 C 1.53000 * 110.43166 * 300.69891 * 21 19 18 23 23 C 1.54622 * 110.48628 * 178.15581 * 21 19 18 24 24 C 1.54834 * 101.60513 * 266.07741 * 23 21 19 25 25 N 1.46763 * 105.49366 * 334.57122 * 24 23 21 26 26 C 1.34422 * 111.30108 * 17.03353 * 25 24 23 27 27 O 1.21279 * 124.94296 * 179.55317 * 26 25 24 28 28 C 1.38234 * 120.00090 * 0.43562 * 16 15 14 29 29 C 1.38235 * 119.99522 * 279.97016 * 13 2 1 30 30 H 1.09005 * 109.46720 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.47016 * 299.99419 * 1 2 3 32 32 H 1.09003 * 109.47594 * 59.99987 * 1 2 3 33 33 H 0.97003 * 119.99869 * 95.00198 * 4 2 1 34 34 H 0.97004 * 119.99960 * 179.97438 * 8 7 5 35 35 H 1.08002 * 119.99744 * 359.97115 * 14 13 2 36 36 H 1.08004 * 119.99577 * 179.72816 * 15 14 13 37 37 H 1.08998 * 109.46931 * 30.21297 * 17 16 15 38 38 H 1.08992 * 109.46793 * 150.21689 * 17 16 15 39 39 H 0.96993 * 120.00388 * 359.97438 * 18 17 16 40 40 H 1.09000 * 109.47019 * 59.29485 * 22 21 19 41 41 H 1.08995 * 109.46951 * 179.29978 * 22 21 19 42 42 H 1.08999 * 109.46998 * 299.29696 * 22 21 19 43 43 H 1.08997 * 110.97552 * 24.23514 * 23 21 19 44 44 H 1.09003 * 110.97100 * 148.00272 * 23 21 19 45 45 H 1.08998 * 110.22315 * 215.57170 * 24 23 21 46 46 H 1.09006 * 110.25348 * 93.58582 * 24 23 21 47 47 H 0.97000 * 124.34818 * 197.05686 * 25 24 23 48 48 H 1.08001 * 120.00324 * 179.78918 * 28 16 15 49 49 H 1.07996 * 120.00471 * 0.02562 * 29 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1492 -0.0075 2.3757 6 1 1.8926 1.0404 2.4242 7 6 2.6114 -0.6620 3.5092 8 7 2.9236 -1.9394 3.4502 9 14 2.7905 0.2698 5.1182 10 1 2.3764 1.6823 4.9208 11 1 1.9293 -0.3580 6.1523 12 1 4.2074 0.2261 5.5606 13 6 2.0323 -0.7103 -1.2306 14 6 2.4587 0.0197 -2.3243 15 6 2.9144 -0.6321 -3.4551 16 6 2.9530 -2.0134 -3.4883 17 6 3.4545 -2.7238 -4.7193 18 7 2.3341 -2.9730 -5.6297 19 6 2.5461 -3.6015 -6.8029 20 8 3.6646 -3.9602 -7.1052 21 6 1.3938 -3.8574 -7.7398 22 6 0.3270 -4.7126 -7.0532 23 6 1.8899 -4.5457 -9.0324 24 6 2.1104 -3.3312 -9.9671 25 7 1.2121 -2.2837 -9.4674 26 6 0.7988 -2.5507 -8.2165 27 8 0.0574 -1.8463 -7.5646 28 6 2.5275 -2.7433 -2.3943 29 6 2.0672 -2.0917 -1.2653 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5138 -0.8900 33 1 2.2491 -1.6318 1.1525 34 1 3.2470 -2.3967 4.2422 35 1 2.4314 1.0990 -2.2971 36 1 3.2434 -0.0618 -4.3113 37 1 4.1979 -2.1031 -5.2194 38 1 3.9072 -3.6727 -4.4320 39 1 1.4396 -2.6864 -5.3877 40 1 -0.0339 -4.1976 -6.1629 41 1 -0.5036 -4.8775 -7.7395 42 1 0.7586 -5.6720 -6.7680 43 1 2.8237 -5.0796 -8.8565 44 1 1.1293 -5.2152 -9.4345 45 1 1.8506 -3.5931 -10.9928 46 1 3.1465 -2.9968 -9.9133 47 1 0.9500 -1.4996 -9.9748 48 1 2.5545 -3.8226 -2.4215 49 1 1.7342 -2.6620 -0.4108 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733682921.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:25:05 Heat of formation + Delta-G solvation = -40.148493 kcal Electronic energy + Delta-G solvation = -29681.651789 eV Core-core repulsion = 25608.375518 eV Total energy + Delta-G solvation = -4073.276271 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.59906 -39.58942 -38.90667 -36.82896 -35.93953 -34.61193 -33.64966 -32.29201 -30.70579 -30.32808 -29.17253 -28.31060 -26.38518 -25.65836 -23.93580 -22.92350 -22.50494 -22.01544 -21.52088 -19.93002 -19.58941 -18.06130 -17.73345 -17.42259 -16.36868 -15.96378 -15.92398 -15.35906 -15.28303 -14.79218 -14.67740 -14.39448 -14.20961 -14.11497 -13.96709 -13.41968 -13.37163 -13.18572 -13.05561 -12.98091 -12.85707 -12.66040 -12.46246 -12.30028 -11.93752 -11.84941 -11.63385 -11.51371 -11.21664 -10.90378 -10.85804 -10.61979 -10.43229 -10.26664 -10.07243 -9.97007 -9.68332 -9.60400 -9.30697 -8.98238 -8.61878 -8.30756 -6.99524 -5.78718 -3.07382 1.46627 1.71102 1.91894 2.30006 2.82960 3.06490 3.42536 3.48182 3.50356 3.71184 3.88465 4.06527 4.22757 4.47318 4.52391 4.58172 4.72749 4.80910 4.99161 5.02297 5.18623 5.21861 5.23329 5.31509 5.38681 5.40339 5.53066 5.56141 5.57302 5.64838 5.73516 5.79659 5.97790 6.03660 6.14722 6.23535 6.26768 6.32749 6.36866 6.47030 6.51802 6.63457 6.73547 6.78376 6.96300 7.17492 7.21992 7.30050 7.69252 7.72189 7.86660 8.39632 9.51067 10.06749 10.42056 11.44003 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.024986 B = 0.001954 C = 0.001909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.360115 B =14323.955746 C =14660.564260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.203 3.797 3 H 0.056 0.944 4 N -0.721 5.721 5 C -0.238 4.238 6 H 0.072 0.928 7 C -0.014 4.014 8 N -0.932 5.932 9 Si 0.907 3.093 10 H -0.280 1.280 11 H -0.292 1.292 12 H -0.292 1.292 13 C -0.052 4.052 14 C -0.121 4.121 15 C -0.100 4.100 16 C -0.132 4.132 17 C 0.166 3.834 18 N -0.713 5.713 19 C 0.534 3.466 20 O -0.533 6.533 21 C -0.120 4.120 22 C -0.130 4.130 23 C -0.117 4.117 24 C 0.098 3.902 25 N -0.728 5.728 26 C 0.531 3.469 27 O -0.515 6.515 28 C -0.098 4.098 29 C -0.106 4.106 30 H 0.048 0.952 31 H 0.057 0.943 32 H 0.038 0.962 33 H 0.385 0.615 34 H 0.255 0.745 35 H 0.121 0.879 36 H 0.116 0.884 37 H 0.074 0.926 38 H 0.077 0.923 39 H 0.409 0.591 40 H 0.073 0.927 41 H 0.072 0.928 42 H 0.075 0.925 43 H 0.110 0.890 44 H 0.091 0.909 45 H 0.084 0.916 46 H 0.078 0.922 47 H 0.414 0.586 48 H 0.119 0.881 49 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.486 -5.319 -29.505 30.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.094 3.906 3 H 0.074 0.926 4 N -0.364 5.364 5 C -0.369 4.369 6 H 0.090 0.910 7 C -0.210 4.210 8 N -0.580 5.580 9 Si 0.738 3.262 10 H -0.205 1.205 11 H -0.219 1.219 12 H -0.219 1.219 13 C -0.053 4.053 14 C -0.139 4.139 15 C -0.119 4.119 16 C -0.132 4.132 17 C 0.044 3.956 18 N -0.364 5.364 19 C 0.317 3.683 20 O -0.410 6.410 21 C -0.127 4.127 22 C -0.188 4.188 23 C -0.155 4.155 24 C -0.026 4.026 25 N -0.384 5.384 26 C 0.315 3.685 27 O -0.390 6.390 28 C -0.117 4.117 29 C -0.124 4.124 30 H 0.067 0.933 31 H 0.076 0.924 32 H 0.057 0.943 33 H 0.220 0.780 34 H 0.065 0.935 35 H 0.139 0.861 36 H 0.134 0.866 37 H 0.092 0.908 38 H 0.096 0.904 39 H 0.245 0.755 40 H 0.092 0.908 41 H 0.091 0.909 42 H 0.094 0.906 43 H 0.129 0.871 44 H 0.110 0.890 45 H 0.103 0.897 46 H 0.096 0.904 47 H 0.253 0.747 48 H 0.137 0.863 49 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -3.003 -5.165 -29.136 29.742 hybrid contribution -0.273 0.644 0.814 1.073 sum -3.276 -4.522 -28.322 28.867 Atomic orbital electron populations 1.22419 0.98196 1.01173 1.00170 1.19254 0.92164 0.95003 0.84198 0.92622 1.42532 1.78197 1.10725 1.04922 1.19289 1.36528 0.94011 0.87103 0.91012 1.24747 1.02081 0.96021 0.98117 1.69670 1.50867 1.08653 1.28837 0.86111 0.77309 0.78802 0.83931 1.20533 1.21882 1.21872 1.20530 0.95120 0.94068 0.95600 1.21012 1.00002 0.99814 0.93118 1.20913 0.99510 0.93516 0.97919 1.19608 1.04370 0.93868 0.95400 1.20204 0.88082 1.00061 0.87245 1.46167 1.12866 1.58735 1.18631 1.19685 0.88912 0.77862 0.81795 1.90702 1.23739 1.51493 1.75081 1.21645 0.96943 0.96724 0.97411 1.21699 0.96510 0.99299 1.01271 1.22777 1.04350 0.97034 0.91345 1.22216 0.94521 0.87327 0.98528 1.46152 1.49306 1.26306 1.16599 1.20321 0.80000 0.86332 0.81865 1.90801 1.35797 1.53271 1.59095 1.21003 0.98235 0.99448 0.92970 1.21080 0.99174 0.94428 0.97729 0.93306 0.92390 0.94284 0.77993 0.93526 0.86115 0.86594 0.90786 0.90444 0.75540 0.90790 0.90906 0.90615 0.87128 0.89045 0.89722 0.90374 0.74710 0.86296 0.85343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.91 9.47 37.16 0.35 -2.56 16 2 C 0.20 4.09 3.09 -69.08 -0.21 3.87 16 3 H 0.06 1.13 7.94 -51.93 -0.41 0.72 16 4 N -0.72 -17.97 5.07 -54.55 -0.28 -18.25 16 5 C -0.24 -6.57 9.93 -15.06 -0.15 -6.72 16 6 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 7 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 8 N -0.93 -28.01 13.06 55.49 0.72 -27.28 16 9 Si 0.91 22.37 29.55 -169.99 -5.02 17.35 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 12 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 13 C -0.05 -0.92 4.95 -104.62 -0.52 -1.43 16 14 C -0.12 -1.85 9.67 -39.58 -0.38 -2.23 16 15 C -0.10 -1.36 9.70 -39.59 -0.38 -1.74 16 16 C -0.13 -1.74 5.25 -104.62 -0.55 -2.29 16 17 C 0.17 1.93 5.80 -5.19 -0.03 1.90 16 18 N -0.71 -7.77 5.41 -61.47 -0.33 -8.10 16 19 C 0.53 5.78 6.55 -10.98 -0.07 5.71 16 20 O -0.53 -7.00 15.46 5.55 0.09 -6.92 16 21 C -0.12 -0.99 0.74 -155.67 -0.12 -1.11 16 22 C -0.13 -0.90 8.31 37.16 0.31 -0.59 16 23 C -0.12 -0.66 6.06 -24.91 -0.15 -0.81 16 24 C 0.10 0.47 7.79 -2.93 -0.02 0.45 16 25 N -0.73 -4.86 6.24 -59.01 -0.37 -5.23 16 26 C 0.53 5.13 7.13 -10.86 -0.08 5.05 16 27 O -0.51 -6.73 17.83 5.56 0.10 -6.63 16 28 C -0.10 -1.40 9.70 -39.58 -0.38 -1.79 16 29 C -0.11 -1.80 9.06 -39.58 -0.36 -2.16 16 30 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.38 10.08 6.06 -40.82 -0.25 9.83 16 34 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 35 H 0.12 1.66 8.04 -52.49 -0.42 1.24 16 36 H 0.12 1.36 8.06 -52.48 -0.42 0.93 16 37 H 0.07 0.86 8.09 -51.93 -0.42 0.44 16 38 H 0.08 0.89 8.08 -51.93 -0.42 0.47 16 39 H 0.41 4.43 7.86 -40.82 -0.32 4.11 16 40 H 0.07 0.58 7.59 -51.93 -0.39 0.18 16 41 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.11 0.71 6.94 -51.93 -0.36 0.35 16 44 H 0.09 0.32 7.91 -51.93 -0.41 -0.09 16 45 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 46 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.41 2.11 8.96 -40.82 -0.37 1.74 16 48 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 49 H 0.13 2.33 6.92 -52.49 -0.36 1.97 16 LS Contribution 406.30 15.07 6.12 6.12 Total: -1.00 -33.85 406.30 -9.30 -43.15 By element: Atomic # 1 Polarization: 20.20 SS G_CDS: -7.49 Total: 12.72 kcal Atomic # 6 Polarization: -4.08 SS G_CDS: -2.84 Total: -6.93 kcal Atomic # 7 Polarization: -58.61 SS G_CDS: -0.25 Total: -58.86 kcal Atomic # 8 Polarization: -13.73 SS G_CDS: 0.18 Total: -13.55 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -33.85 -9.30 -43.15 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733682921.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.002 kcal (2) G-P(sol) polarization free energy of solvation -33.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds