Wall clock time and date at job start Wed Apr 1 2020 03:25:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.46720 * 2 1 4 4 N 1.46496 * 109.47396 * 120.00214 * 2 1 3 5 5 C 1.36939 * 119.99930 * 275.00282 * 4 2 1 6 6 H 1.07994 * 120.00104 * 359.97438 * 5 4 2 7 7 C 1.38810 * 119.99907 * 179.97438 * 5 4 2 8 8 N 1.31622 * 119.99948 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00270 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46731 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.47175 * 119.99684 * 9 7 5 12 12 H 1.48500 * 109.47359 * 240.00199 * 9 7 5 13 13 C 1.50702 * 109.46902 * 240.00758 * 2 1 3 14 14 C 1.38234 * 120.00257 * 100.00003 * 13 2 1 15 15 C 1.38238 * 119.99675 * 180.25732 * 14 13 2 16 16 C 1.38228 * 120.00110 * 359.52133 * 15 14 13 17 17 C 1.50706 * 119.99983 * 180.21781 * 16 15 14 18 18 N 1.46501 * 109.46739 * 270.21443 * 17 16 15 19 19 C 1.34780 * 119.99643 * 180.02562 * 18 17 16 20 20 O 1.21285 * 120.00073 * 359.97438 * 19 18 17 21 21 C 1.50701 * 120.00276 * 180.02562 * 19 18 17 22 22 C 1.53000 * 110.43166 * 300.69891 * 21 19 18 23 23 C 1.54622 * 110.48628 * 178.15581 * 21 19 18 24 24 C 1.54834 * 101.60513 * 266.07741 * 23 21 19 25 25 N 1.46763 * 105.49366 * 334.57122 * 24 23 21 26 26 C 1.34422 * 111.30108 * 17.03353 * 25 24 23 27 27 O 1.21279 * 124.94296 * 179.55317 * 26 25 24 28 28 C 1.38234 * 120.00090 * 0.43562 * 16 15 14 29 29 C 1.38235 * 119.99522 * 279.97016 * 13 2 1 30 30 H 1.09005 * 109.46720 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.47016 * 299.99419 * 1 2 3 32 32 H 1.09003 * 109.47594 * 59.99987 * 1 2 3 33 33 H 0.97003 * 119.99869 * 95.00198 * 4 2 1 34 34 H 0.97004 * 119.99960 * 179.97438 * 8 7 5 35 35 H 1.08002 * 119.99744 * 359.97115 * 14 13 2 36 36 H 1.08004 * 119.99577 * 179.72816 * 15 14 13 37 37 H 1.08998 * 109.46931 * 30.21297 * 17 16 15 38 38 H 1.08992 * 109.46793 * 150.21689 * 17 16 15 39 39 H 0.96993 * 120.00388 * 359.97438 * 18 17 16 40 40 H 1.09000 * 109.47019 * 59.29485 * 22 21 19 41 41 H 1.08995 * 109.46951 * 179.29978 * 22 21 19 42 42 H 1.08999 * 109.46998 * 299.29696 * 22 21 19 43 43 H 1.08997 * 110.97552 * 24.23514 * 23 21 19 44 44 H 1.09003 * 110.97100 * 148.00272 * 23 21 19 45 45 H 1.08998 * 110.22315 * 215.57170 * 24 23 21 46 46 H 1.09006 * 110.25348 * 93.58582 * 24 23 21 47 47 H 0.97000 * 124.34818 * 197.05686 * 25 24 23 48 48 H 1.08001 * 120.00324 * 179.78918 * 28 16 15 49 49 H 1.07996 * 120.00471 * 0.02562 * 29 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1492 -0.0075 2.3757 6 1 1.8926 1.0404 2.4242 7 6 2.6114 -0.6620 3.5092 8 7 2.9236 -1.9394 3.4502 9 14 2.7905 0.2698 5.1182 10 1 2.3764 1.6823 4.9208 11 1 1.9293 -0.3580 6.1523 12 1 4.2074 0.2261 5.5606 13 6 2.0323 -0.7103 -1.2306 14 6 2.4587 0.0197 -2.3243 15 6 2.9144 -0.6321 -3.4551 16 6 2.9530 -2.0134 -3.4883 17 6 3.4545 -2.7238 -4.7193 18 7 2.3341 -2.9730 -5.6297 19 6 2.5461 -3.6015 -6.8029 20 8 3.6646 -3.9602 -7.1052 21 6 1.3938 -3.8574 -7.7398 22 6 0.3270 -4.7126 -7.0532 23 6 1.8899 -4.5457 -9.0324 24 6 2.1104 -3.3312 -9.9671 25 7 1.2121 -2.2837 -9.4674 26 6 0.7988 -2.5507 -8.2165 27 8 0.0574 -1.8463 -7.5646 28 6 2.5275 -2.7433 -2.3943 29 6 2.0672 -2.0917 -1.2653 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5138 -0.8900 33 1 2.2491 -1.6318 1.1525 34 1 3.2470 -2.3967 4.2422 35 1 2.4314 1.0990 -2.2971 36 1 3.2434 -0.0618 -4.3113 37 1 4.1979 -2.1031 -5.2194 38 1 3.9072 -3.6727 -4.4320 39 1 1.4396 -2.6864 -5.3877 40 1 -0.0339 -4.1976 -6.1629 41 1 -0.5036 -4.8775 -7.7395 42 1 0.7586 -5.6720 -6.7680 43 1 2.8237 -5.0796 -8.8565 44 1 1.1293 -5.2152 -9.4345 45 1 1.8506 -3.5931 -10.9928 46 1 3.1465 -2.9968 -9.9133 47 1 0.9500 -1.4996 -9.9748 48 1 2.5545 -3.8226 -2.4215 49 1 1.7342 -2.6620 -0.4108 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733682921.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:25:04 Heat of formation + Delta-G solvation = -64.041669 kcal Electronic energy + Delta-G solvation = -29682.687875 eV Core-core repulsion = 25608.375518 eV Total energy + Delta-G solvation = -4074.312357 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.29328 -40.70243 -39.86307 -37.65869 -37.26930 -35.81108 -34.42479 -33.95321 -31.96011 -31.66300 -30.11985 -29.61701 -27.37912 -26.40383 -25.82423 -23.96820 -23.51409 -22.82552 -22.58241 -21.17146 -20.54222 -19.40255 -18.74548 -18.36605 -17.44046 -17.08468 -16.86494 -16.55822 -16.35850 -16.02478 -15.71701 -15.56869 -15.10799 -15.06366 -14.87315 -14.74129 -14.66917 -14.45460 -14.27735 -13.86497 -13.75957 -13.49526 -13.45695 -13.35473 -13.21923 -12.99166 -12.81976 -12.74745 -12.50282 -12.31434 -12.14394 -12.10003 -12.03610 -11.62167 -11.55143 -11.22724 -11.02548 -10.86777 -10.22024 -10.15385 -9.81582 -9.56895 -9.03360 -7.94791 -5.23277 0.27831 0.50795 1.15333 1.46891 1.47392 1.51098 1.57423 2.13275 2.36446 2.55469 2.89857 3.14608 3.35037 3.39576 3.56467 3.66428 3.84288 3.88744 3.96712 4.02605 4.06840 4.12568 4.32669 4.39231 4.51633 4.56363 4.61947 4.66262 4.71161 4.75591 4.76053 4.77231 4.99261 5.01072 5.04712 5.08700 5.09500 5.13570 5.20108 5.27086 5.39718 5.50122 5.53441 5.59927 5.69953 5.81493 5.90216 6.07193 6.27595 6.35394 7.00002 7.11046 7.33653 8.07895 8.32436 9.28966 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.024986 B = 0.001954 C = 0.001909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.360115 B =14323.955746 C =14660.564260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.199 3.801 3 H 0.054 0.946 4 N -0.734 5.734 5 C -0.237 4.237 6 H 0.077 0.923 7 C -0.078 4.078 8 N -0.970 5.970 9 Si 0.972 3.028 10 H -0.265 1.265 11 H -0.294 1.294 12 H -0.295 1.295 13 C -0.073 4.073 14 C -0.123 4.123 15 C -0.096 4.096 16 C -0.119 4.119 17 C 0.171 3.829 18 N -0.712 5.712 19 C 0.532 3.468 20 O -0.557 6.557 21 C -0.119 4.119 22 C -0.130 4.130 23 C -0.113 4.113 24 C 0.096 3.904 25 N -0.717 5.717 26 C 0.524 3.476 27 O -0.557 6.557 28 C -0.097 4.097 29 C -0.123 4.123 30 H 0.041 0.959 31 H 0.043 0.957 32 H 0.068 0.932 33 H 0.375 0.625 34 H 0.250 0.750 35 H 0.136 0.864 36 H 0.141 0.859 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.410 0.590 40 H 0.060 0.940 41 H 0.087 0.913 42 H 0.085 0.915 43 H 0.104 0.896 44 H 0.118 0.882 45 H 0.119 0.881 46 H 0.073 0.927 47 H 0.421 0.579 48 H 0.136 0.864 49 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.570 -5.026 -32.245 32.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.091 3.909 3 H 0.072 0.928 4 N -0.376 5.376 5 C -0.369 4.369 6 H 0.095 0.905 7 C -0.270 4.270 8 N -0.621 5.621 9 Si 0.802 3.198 10 H -0.190 1.190 11 H -0.222 1.222 12 H -0.222 1.222 13 C -0.074 4.074 14 C -0.141 4.141 15 C -0.114 4.114 16 C -0.119 4.119 17 C 0.049 3.951 18 N -0.363 5.363 19 C 0.317 3.683 20 O -0.436 6.436 21 C -0.126 4.126 22 C -0.187 4.187 23 C -0.151 4.151 24 C -0.027 4.027 25 N -0.372 5.372 26 C 0.308 3.692 27 O -0.435 6.435 28 C -0.115 4.115 29 C -0.141 4.141 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.087 0.913 33 H 0.208 0.792 34 H 0.059 0.941 35 H 0.154 0.846 36 H 0.159 0.841 37 H 0.096 0.904 38 H 0.098 0.902 39 H 0.246 0.754 40 H 0.079 0.921 41 H 0.106 0.894 42 H 0.104 0.896 43 H 0.122 0.878 44 H 0.136 0.864 45 H 0.137 0.863 46 H 0.091 0.909 47 H 0.262 0.738 48 H 0.154 0.846 49 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -3.101 -4.839 -31.946 32.459 hybrid contribution -0.238 0.551 1.484 1.601 sum -3.339 -4.288 -30.463 30.944 Atomic orbital electron populations 1.22256 0.96749 1.00956 1.00880 1.19407 0.93057 0.94656 0.83743 0.92819 1.42725 1.78470 1.10466 1.05903 1.19671 1.34799 0.94292 0.88139 0.90493 1.25552 1.03012 0.96945 1.01454 1.69826 1.52700 1.10191 1.29338 0.85081 0.76707 0.78232 0.79800 1.18966 1.22155 1.22208 1.20332 0.97239 0.94301 0.95533 1.21178 0.99507 1.00624 0.92788 1.21191 0.98405 0.93805 0.98026 1.19765 1.02770 0.93924 0.95448 1.20123 0.88310 1.00040 0.86651 1.46146 1.12625 1.58748 1.18737 1.20122 0.89327 0.77047 0.81774 1.90691 1.24893 1.52435 1.75587 1.21690 0.96159 0.96671 0.98031 1.21735 0.96668 0.99269 1.01068 1.22861 1.04739 0.97500 0.90019 1.22409 0.93907 0.86313 1.00063 1.46214 1.48472 1.26807 1.15730 1.20577 0.79693 0.86453 0.82463 1.90775 1.37860 1.54565 1.60341 1.21145 0.97576 1.00425 0.92351 1.20989 1.00620 0.94390 0.98125 0.93985 0.93750 0.91349 0.79193 0.94090 0.84565 0.84116 0.90400 0.90226 0.75422 0.92080 0.89416 0.89627 0.87806 0.86414 0.86278 0.90867 0.73840 0.84615 0.87542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.43 9.47 71.98 0.68 -4.74 16 2 C 0.20 8.09 3.09 44.25 0.14 8.22 16 3 H 0.05 2.17 7.94 -2.38 -0.02 2.16 16 4 N -0.73 -37.56 5.07 -326.50 -1.66 -39.21 16 5 C -0.24 -13.27 9.93 84.03 0.83 -12.44 16 6 H 0.08 4.13 7.83 -2.91 -0.02 4.10 16 7 C -0.08 -4.50 5.50 84.86 0.47 -4.03 16 8 N -0.97 -59.93 13.06 21.65 0.28 -59.64 16 9 Si 0.97 46.66 29.55 68.60 2.03 48.68 16 10 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 11 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 12 H -0.29 -14.17 7.11 99.48 0.71 -13.47 16 13 C -0.07 -2.58 4.95 -19.87 -0.10 -2.67 16 14 C -0.12 -3.59 9.67 22.27 0.22 -3.37 16 15 C -0.10 -2.42 9.70 22.27 0.22 -2.20 16 16 C -0.12 -2.95 5.25 -19.87 -0.10 -3.06 16 17 C 0.17 3.70 5.80 85.63 0.50 4.20 16 18 N -0.71 -14.61 5.41 -466.77 -2.52 -17.13 16 19 C 0.53 10.81 6.55 87.66 0.57 11.38 16 20 O -0.56 -13.90 15.46 -3.05 -0.05 -13.95 16 21 C -0.12 -1.75 0.74 -52.94 -0.04 -1.79 16 22 C -0.13 -1.57 8.31 71.98 0.60 -0.98 16 23 C -0.11 -0.97 6.06 31.77 0.19 -0.77 16 24 C 0.10 0.65 7.79 86.96 0.68 1.32 16 25 N -0.72 -8.03 6.24 -459.19 -2.87 -10.90 16 26 C 0.52 9.35 7.13 87.90 0.63 9.98 16 27 O -0.56 -14.21 17.83 -3.03 -0.05 -14.26 16 28 C -0.10 -2.72 9.70 22.27 0.22 -2.50 16 29 C -0.12 -4.26 9.06 22.27 0.20 -4.06 16 30 H 0.04 1.56 8.14 -2.38 -0.02 1.54 16 31 H 0.04 1.70 8.14 -2.38 -0.02 1.68 16 32 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 33 H 0.37 20.47 6.06 -92.71 -0.56 19.91 16 34 H 0.25 14.98 8.31 -92.71 -0.77 14.21 16 35 H 0.14 3.49 8.04 -2.91 -0.02 3.47 16 36 H 0.14 2.87 8.06 -2.91 -0.02 2.85 16 37 H 0.08 1.66 8.09 -2.39 -0.02 1.64 16 38 H 0.08 1.72 8.08 -2.39 -0.02 1.70 16 39 H 0.41 8.49 7.86 -92.71 -0.73 7.76 16 40 H 0.06 0.90 7.59 -2.39 -0.02 0.89 16 41 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 42 H 0.08 0.85 8.14 -2.39 -0.02 0.84 16 43 H 0.10 1.10 6.94 -2.39 -0.02 1.09 16 44 H 0.12 0.40 7.91 -2.39 -0.02 0.38 16 45 H 0.12 0.04 8.14 -2.39 -0.02 0.02 16 46 H 0.07 0.61 8.14 -2.38 -0.02 0.59 16 47 H 0.42 3.44 8.96 -92.71 -0.83 2.60 16 48 H 0.14 3.29 8.06 -2.91 -0.02 3.26 16 49 H 0.11 4.11 6.92 -2.91 -0.02 4.09 16 Total: -1.00 -74.34 406.30 -0.08 -74.41 By element: Atomic # 1 Polarization: 40.65 SS G_CDS: -1.13 Total: 39.51 kcal Atomic # 6 Polarization: -13.40 SS G_CDS: 5.89 Total: -7.51 kcal Atomic # 7 Polarization: -120.12 SS G_CDS: -6.76 Total: -126.89 kcal Atomic # 8 Polarization: -28.11 SS G_CDS: -0.10 Total: -28.21 kcal Atomic # 14 Polarization: 46.66 SS G_CDS: 2.03 Total: 48.68 kcal Total: -74.34 -0.08 -74.41 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733682921.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.371 kcal (2) G-P(sol) polarization free energy of solvation -74.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds