Wall clock time and date at job start Wed Apr 1 2020 03:25:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.47189 * 2 1 4 4 N 1.46506 * 109.47182 * 240.00413 * 2 1 3 5 5 C 1.36939 * 120.00073 * 84.72333 * 4 2 1 6 6 H 1.08004 * 119.99859 * 0.02562 * 5 4 2 7 7 C 1.38805 * 119.99849 * 180.02562 * 5 4 2 8 8 N 1.31622 * 120.00455 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 120.00168 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47227 * 89.99498 * 9 7 5 11 11 H 1.48496 * 109.47434 * 209.99930 * 9 7 5 12 12 H 1.48507 * 109.46769 * 330.00032 * 9 7 5 13 13 C 1.50694 * 109.47453 * 120.00389 * 2 1 3 14 14 C 1.38239 * 120.00333 * 79.72304 * 13 2 1 15 15 C 1.38233 * 120.00337 * 179.77388 * 14 13 2 16 16 C 1.38238 * 119.99691 * 0.50229 * 15 14 13 17 17 C 1.50699 * 119.99678 * 179.72923 * 16 15 14 18 18 N 1.46498 * 109.47113 * 270.02228 * 17 16 15 19 19 C 1.34780 * 119.99986 * 180.02562 * 18 17 16 20 20 O 1.21273 * 119.99823 * 359.97438 * 19 18 17 21 21 C 1.50702 * 119.99787 * 180.02562 * 19 18 17 22 22 C 1.52999 * 110.43160 * 300.69958 * 21 19 18 23 23 C 1.54631 * 110.48285 * 178.15857 * 21 19 18 24 24 C 1.54827 * 101.60211 * 266.07997 * 23 21 19 25 25 N 1.46768 * 105.49501 * 334.56628 * 24 23 21 26 26 C 1.34411 * 111.29887 * 17.04384 * 25 24 23 27 27 O 1.21282 * 124.94257 * 179.55777 * 26 25 24 28 28 C 1.38231 * 120.00290 * 359.74948 * 16 15 14 29 29 C 1.38233 * 120.00197 * 260.00363 * 13 2 1 30 30 H 1.09002 * 109.47097 * 300.00189 * 1 2 3 31 31 H 1.09007 * 109.47360 * 59.99353 * 1 2 3 32 32 H 1.08997 * 109.47379 * 179.97438 * 1 2 3 33 33 H 0.97005 * 119.99811 * 265.00126 * 4 2 1 34 34 H 0.97000 * 120.00679 * 179.97438 * 8 7 5 35 35 H 1.08002 * 119.99696 * 0.02562 * 14 13 2 36 36 H 1.08001 * 119.99996 * 180.23396 * 15 14 13 37 37 H 1.09001 * 109.47117 * 30.02429 * 17 16 15 38 38 H 1.09002 * 109.47037 * 150.02358 * 17 16 15 39 39 H 0.97001 * 120.00058 * 359.97438 * 18 17 16 40 40 H 1.08991 * 109.47397 * 59.30350 * 22 21 19 41 41 H 1.09007 * 109.46972 * 179.30173 * 22 21 19 42 42 H 1.09000 * 109.47107 * 299.29772 * 22 21 19 43 43 H 1.08993 * 110.97216 * 24.23989 * 23 21 19 44 44 H 1.09007 * 110.96416 * 148.00248 * 23 21 19 45 45 H 1.09004 * 110.21611 * 215.57216 * 24 23 21 46 46 H 1.08996 * 110.25411 * 93.58814 * 24 23 21 47 47 H 0.97002 * 124.34393 * 197.05407 * 25 24 23 48 48 H 1.07996 * 120.00319 * 179.97438 * 28 16 15 49 49 H 1.08001 * 120.00004 * 359.97438 * 29 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1963 5 6 2.1437 -0.0087 -2.3772 6 1 1.8830 1.0382 -2.4266 7 6 2.6059 -0.6632 -3.5107 8 7 2.9242 -1.9389 -3.4504 9 14 2.7777 0.2670 -5.1215 10 1 4.1379 0.8564 -5.2102 11 1 2.5678 -0.6665 -6.2571 12 1 1.7640 1.3508 -5.1777 13 6 2.0323 -0.7104 1.2303 14 6 2.0614 -2.0920 1.2673 15 6 2.5267 -2.7437 2.3942 16 6 2.9531 -2.0139 3.4880 17 6 3.4546 -2.7244 4.7188 18 7 2.3344 -2.9732 5.6295 19 6 2.5467 -3.6009 6.8032 20 8 3.6650 -3.9600 7.1051 21 6 1.3942 -3.8573 7.7397 22 6 0.7304 -2.5392 8.1433 23 6 1.8753 -4.6267 8.9918 24 6 1.5987 -6.0937 8.5812 25 7 0.5185 -6.0263 7.5898 26 6 0.3853 -4.7831 7.0966 27 8 -0.4254 -4.4518 6.2576 28 6 2.9192 -0.6324 3.4531 29 6 2.4587 0.0193 2.3242 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5140 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 2.2490 -1.6318 -1.1527 34 1 3.2468 -2.3964 -4.2426 35 1 1.7245 -2.6623 0.4143 36 1 2.5529 -3.8230 2.4216 37 1 3.9070 -3.6735 4.4314 38 1 4.1984 -2.1040 5.2187 39 1 1.4400 -2.6856 5.3881 40 1 0.3689 -2.0266 7.2520 41 1 -0.1075 -2.7436 8.8099 42 1 1.4569 -1.9086 8.6558 43 1 2.9386 -4.4622 9.1660 44 1 1.2903 -4.3493 9.8687 45 1 1.2800 -6.6736 9.4474 46 1 2.4907 -6.5360 8.1378 47 1 -0.0290 -6.7820 7.3248 48 1 3.2519 -0.0622 4.3078 49 1 2.4321 1.0986 2.2969 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733682922.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:25:09 Heat of formation + Delta-G solvation = -40.010850 kcal Electronic energy + Delta-G solvation = -29703.082467 eV Core-core repulsion = 25629.812164 eV Total energy + Delta-G solvation = -4073.270302 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.59027 -39.58547 -38.90238 -36.81284 -35.93581 -34.61036 -33.64564 -32.28857 -30.70347 -30.32665 -29.16624 -28.30558 -26.38657 -25.65420 -23.93171 -22.92267 -22.48858 -22.01656 -21.51610 -19.92611 -19.58621 -18.05034 -17.71704 -17.41774 -16.36766 -16.00417 -15.84552 -15.45414 -15.19501 -14.79584 -14.67293 -14.38250 -14.21297 -14.12074 -13.94669 -13.40107 -13.37501 -13.20653 -13.03008 -12.99397 -12.86536 -12.66777 -12.45276 -12.29765 -11.93794 -11.84315 -11.63796 -11.50759 -11.21907 -10.90179 -10.83745 -10.61691 -10.42357 -10.28033 -10.06620 -9.98511 -9.67496 -9.58170 -9.30601 -8.97265 -8.61762 -8.30617 -6.99118 -5.77966 -3.06832 1.46751 1.71090 1.93024 2.31141 2.84847 3.06758 3.43218 3.48212 3.49915 3.71724 3.89037 4.06655 4.22906 4.47666 4.52665 4.58589 4.72849 4.81387 4.99022 5.03348 5.17211 5.20568 5.22901 5.31546 5.38884 5.40737 5.53025 5.56669 5.57014 5.63140 5.73602 5.80010 5.97830 6.03751 6.14864 6.25628 6.26854 6.32878 6.37227 6.49581 6.51774 6.63556 6.73242 6.79061 6.96833 7.17809 7.22099 7.30168 7.68942 7.74275 7.86833 8.40262 9.51564 10.07337 10.42578 11.44684 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.021943 B = 0.001977 C = 0.001968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.698469 B =14159.607178 C =14222.175500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.204 3.796 3 H 0.056 0.944 4 N -0.722 5.722 5 C -0.239 4.239 6 H 0.071 0.929 7 C -0.013 4.013 8 N -0.932 5.932 9 Si 0.908 3.092 10 H -0.290 1.290 11 H -0.292 1.292 12 H -0.282 1.282 13 C -0.052 4.052 14 C -0.105 4.105 15 C -0.096 4.096 16 C -0.132 4.132 17 C 0.166 3.834 18 N -0.713 5.713 19 C 0.534 3.466 20 O -0.533 6.533 21 C -0.121 4.121 22 C -0.129 4.129 23 C -0.117 4.117 24 C 0.098 3.902 25 N -0.728 5.728 26 C 0.531 3.469 27 O -0.514 6.514 28 C -0.101 4.101 29 C -0.122 4.122 30 H 0.038 0.962 31 H 0.057 0.943 32 H 0.048 0.952 33 H 0.385 0.615 34 H 0.255 0.745 35 H 0.128 0.872 36 H 0.118 0.882 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.409 0.591 40 H 0.073 0.927 41 H 0.072 0.928 42 H 0.074 0.926 43 H 0.110 0.890 44 H 0.091 0.909 45 H 0.084 0.916 46 H 0.078 0.922 47 H 0.414 0.586 48 H 0.117 0.883 49 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.519 -5.461 29.419 30.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.094 3.906 3 H 0.074 0.926 4 N -0.364 5.364 5 C -0.370 4.370 6 H 0.089 0.911 7 C -0.209 4.209 8 N -0.580 5.580 9 Si 0.739 3.261 10 H -0.217 1.217 11 H -0.218 1.218 12 H -0.207 1.207 13 C -0.053 4.053 14 C -0.123 4.123 15 C -0.115 4.115 16 C -0.133 4.133 17 C 0.044 3.956 18 N -0.364 5.364 19 C 0.317 3.683 20 O -0.410 6.410 21 C -0.127 4.127 22 C -0.187 4.187 23 C -0.155 4.155 24 C -0.026 4.026 25 N -0.383 5.383 26 C 0.314 3.686 27 O -0.389 6.389 28 C -0.120 4.120 29 C -0.140 4.140 30 H 0.057 0.943 31 H 0.076 0.924 32 H 0.067 0.933 33 H 0.220 0.780 34 H 0.065 0.935 35 H 0.146 0.854 36 H 0.136 0.864 37 H 0.093 0.907 38 H 0.095 0.905 39 H 0.245 0.755 40 H 0.092 0.908 41 H 0.091 0.909 42 H 0.093 0.907 43 H 0.128 0.872 44 H 0.109 0.891 45 H 0.103 0.897 46 H 0.096 0.904 47 H 0.253 0.747 48 H 0.135 0.865 49 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -3.040 -5.329 29.038 29.679 hybrid contribution -0.428 -0.178 -1.230 1.315 sum -3.469 -5.507 27.808 28.559 Atomic orbital electron populations 1.22422 0.98219 1.01198 1.00147 1.19252 0.92144 0.94987 0.84215 0.92614 1.42530 1.78229 1.10784 1.04841 1.19240 1.36635 0.94083 0.87057 0.91064 1.24745 1.02047 0.96017 0.98113 1.69658 1.50697 1.08746 1.28944 0.86182 0.77790 0.78578 0.83584 1.21717 1.21785 1.20740 1.20527 0.95135 0.94031 0.95603 1.21084 0.99057 0.94449 0.97753 1.21011 0.98015 0.99464 0.93011 1.19608 1.04388 0.93886 0.95376 1.20201 0.88086 1.00029 0.87278 1.46168 1.12816 1.59008 1.18411 1.19682 0.88984 0.77828 0.81757 1.90698 1.23889 1.51535 1.74887 1.21647 0.95348 0.98664 0.97083 1.21693 1.00745 0.93307 1.02975 1.22775 1.04907 0.92569 0.95235 1.22215 0.90418 0.98018 0.91961 1.46150 1.37146 1.11198 1.43850 1.20312 0.83500 0.83491 0.81270 1.90808 1.37904 1.78599 1.31581 1.20905 0.99647 0.93413 0.98024 1.21007 1.00090 0.99784 0.93149 0.94303 0.92391 0.93298 0.77990 0.93467 0.85381 0.86429 0.90697 0.90541 0.75542 0.90825 0.90910 0.90679 0.87151 0.89066 0.89718 0.90354 0.74658 0.86461 0.86092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.93 9.46 37.16 0.35 -2.58 16 2 C 0.20 4.09 3.09 -69.08 -0.21 3.88 16 3 H 0.06 1.12 7.94 -51.93 -0.41 0.71 16 4 N -0.72 -18.07 5.07 -54.55 -0.28 -18.35 16 5 C -0.24 -6.61 9.93 -15.06 -0.15 -6.76 16 6 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 7 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 8 N -0.93 -28.17 13.06 55.49 0.72 -27.44 16 9 Si 0.91 22.42 29.55 -169.99 -5.02 17.39 16 10 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 11 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 12 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 13 C -0.05 -0.91 4.95 -104.63 -0.52 -1.43 16 14 C -0.11 -1.83 9.05 -39.58 -0.36 -2.18 16 15 C -0.10 -1.44 9.70 -39.58 -0.38 -1.82 16 16 C -0.13 -1.74 5.25 -104.62 -0.55 -2.29 16 17 C 0.17 1.93 5.80 -5.20 -0.03 1.90 16 18 N -0.71 -7.78 5.41 -61.47 -0.33 -8.11 16 19 C 0.53 5.79 6.55 -10.98 -0.07 5.72 16 20 O -0.53 -7.01 15.46 5.56 0.09 -6.92 16 21 C -0.12 -0.99 0.74 -155.67 -0.12 -1.11 16 22 C -0.13 -0.86 8.31 37.16 0.31 -0.55 16 23 C -0.12 -0.66 6.06 -24.91 -0.15 -0.81 16 24 C 0.10 0.49 7.79 -2.93 -0.02 0.47 16 25 N -0.73 -5.12 6.24 -59.01 -0.37 -5.49 16 26 C 0.53 5.27 7.13 -10.87 -0.08 5.19 16 27 O -0.51 -6.92 17.83 5.56 0.10 -6.82 16 28 C -0.10 -1.32 9.70 -39.58 -0.38 -1.71 16 29 C -0.12 -1.82 9.67 -39.58 -0.38 -2.20 16 30 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 32 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.38 10.17 6.08 -40.82 -0.25 9.92 16 34 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 35 H 0.13 2.39 6.93 -52.49 -0.36 2.03 16 36 H 0.12 1.59 8.06 -52.49 -0.42 1.17 16 37 H 0.07 0.91 8.09 -51.93 -0.42 0.49 16 38 H 0.08 0.85 8.09 -51.93 -0.42 0.43 16 39 H 0.41 4.44 7.86 -40.82 -0.32 4.12 16 40 H 0.07 0.55 7.59 -51.93 -0.39 0.16 16 41 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.11 0.70 6.94 -51.93 -0.36 0.34 16 44 H 0.09 0.32 7.92 -51.92 -0.41 -0.09 16 45 H 0.08 0.21 8.14 -51.93 -0.42 -0.22 16 46 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.41 2.30 8.96 -40.82 -0.37 1.94 16 48 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 49 H 0.12 1.60 8.04 -52.49 -0.42 1.18 16 LS Contribution 406.32 15.07 6.12 6.12 Total: -1.00 -34.05 406.32 -9.30 -43.35 By element: Atomic # 1 Polarization: 20.50 SS G_CDS: -7.49 Total: 13.01 kcal Atomic # 6 Polarization: -3.90 SS G_CDS: -2.84 Total: -6.75 kcal Atomic # 7 Polarization: -59.14 SS G_CDS: -0.25 Total: -59.39 kcal Atomic # 8 Polarization: -13.92 SS G_CDS: 0.19 Total: -13.74 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -34.05 -9.30 -43.35 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733682922.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.337 kcal (2) G-P(sol) polarization free energy of solvation -34.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds