Wall clock time and date at job start Wed Apr 1 2020 03:25:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.47189 * 2 1 4 4 N 1.46506 * 109.47182 * 240.00413 * 2 1 3 5 5 C 1.36939 * 120.00073 * 84.72333 * 4 2 1 6 6 H 1.08004 * 119.99859 * 0.02562 * 5 4 2 7 7 C 1.38805 * 119.99849 * 180.02562 * 5 4 2 8 8 N 1.31622 * 120.00455 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 120.00168 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47227 * 89.99498 * 9 7 5 11 11 H 1.48496 * 109.47434 * 209.99930 * 9 7 5 12 12 H 1.48507 * 109.46769 * 330.00032 * 9 7 5 13 13 C 1.50694 * 109.47453 * 120.00389 * 2 1 3 14 14 C 1.38239 * 120.00333 * 79.72304 * 13 2 1 15 15 C 1.38233 * 120.00337 * 179.77388 * 14 13 2 16 16 C 1.38238 * 119.99691 * 0.50229 * 15 14 13 17 17 C 1.50699 * 119.99678 * 179.72923 * 16 15 14 18 18 N 1.46498 * 109.47113 * 270.02228 * 17 16 15 19 19 C 1.34780 * 119.99986 * 180.02562 * 18 17 16 20 20 O 1.21273 * 119.99823 * 359.97438 * 19 18 17 21 21 C 1.50702 * 119.99787 * 180.02562 * 19 18 17 22 22 C 1.52999 * 110.43160 * 300.69958 * 21 19 18 23 23 C 1.54631 * 110.48285 * 178.15857 * 21 19 18 24 24 C 1.54827 * 101.60211 * 266.07997 * 23 21 19 25 25 N 1.46768 * 105.49501 * 334.56628 * 24 23 21 26 26 C 1.34411 * 111.29887 * 17.04384 * 25 24 23 27 27 O 1.21282 * 124.94257 * 179.55777 * 26 25 24 28 28 C 1.38231 * 120.00290 * 359.74948 * 16 15 14 29 29 C 1.38233 * 120.00197 * 260.00363 * 13 2 1 30 30 H 1.09002 * 109.47097 * 300.00189 * 1 2 3 31 31 H 1.09007 * 109.47360 * 59.99353 * 1 2 3 32 32 H 1.08997 * 109.47379 * 179.97438 * 1 2 3 33 33 H 0.97005 * 119.99811 * 265.00126 * 4 2 1 34 34 H 0.97000 * 120.00679 * 179.97438 * 8 7 5 35 35 H 1.08002 * 119.99696 * 0.02562 * 14 13 2 36 36 H 1.08001 * 119.99996 * 180.23396 * 15 14 13 37 37 H 1.09001 * 109.47117 * 30.02429 * 17 16 15 38 38 H 1.09002 * 109.47037 * 150.02358 * 17 16 15 39 39 H 0.97001 * 120.00058 * 359.97438 * 18 17 16 40 40 H 1.08991 * 109.47397 * 59.30350 * 22 21 19 41 41 H 1.09007 * 109.46972 * 179.30173 * 22 21 19 42 42 H 1.09000 * 109.47107 * 299.29772 * 22 21 19 43 43 H 1.08993 * 110.97216 * 24.23989 * 23 21 19 44 44 H 1.09007 * 110.96416 * 148.00248 * 23 21 19 45 45 H 1.09004 * 110.21611 * 215.57216 * 24 23 21 46 46 H 1.08996 * 110.25411 * 93.58814 * 24 23 21 47 47 H 0.97002 * 124.34393 * 197.05407 * 25 24 23 48 48 H 1.07996 * 120.00319 * 179.97438 * 28 16 15 49 49 H 1.08001 * 120.00004 * 359.97438 * 29 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1963 5 6 2.1437 -0.0087 -2.3772 6 1 1.8830 1.0382 -2.4266 7 6 2.6059 -0.6632 -3.5107 8 7 2.9242 -1.9389 -3.4504 9 14 2.7777 0.2670 -5.1215 10 1 4.1379 0.8564 -5.2102 11 1 2.5678 -0.6665 -6.2571 12 1 1.7640 1.3508 -5.1777 13 6 2.0323 -0.7104 1.2303 14 6 2.0614 -2.0920 1.2673 15 6 2.5267 -2.7437 2.3942 16 6 2.9531 -2.0139 3.4880 17 6 3.4546 -2.7244 4.7188 18 7 2.3344 -2.9732 5.6295 19 6 2.5467 -3.6009 6.8032 20 8 3.6650 -3.9600 7.1051 21 6 1.3942 -3.8573 7.7397 22 6 0.7304 -2.5392 8.1433 23 6 1.8753 -4.6267 8.9918 24 6 1.5987 -6.0937 8.5812 25 7 0.5185 -6.0263 7.5898 26 6 0.3853 -4.7831 7.0966 27 8 -0.4254 -4.4518 6.2576 28 6 2.9192 -0.6324 3.4531 29 6 2.4587 0.0193 2.3242 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5140 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 2.2490 -1.6318 -1.1527 34 1 3.2468 -2.3964 -4.2426 35 1 1.7245 -2.6623 0.4143 36 1 2.5529 -3.8230 2.4216 37 1 3.9070 -3.6735 4.4314 38 1 4.1984 -2.1040 5.2187 39 1 1.4400 -2.6856 5.3881 40 1 0.3689 -2.0266 7.2520 41 1 -0.1075 -2.7436 8.8099 42 1 1.4569 -1.9086 8.6558 43 1 2.9386 -4.4622 9.1660 44 1 1.2903 -4.3493 9.8687 45 1 1.2800 -6.6736 9.4474 46 1 2.4907 -6.5360 8.1378 47 1 -0.0290 -6.7820 7.3248 48 1 3.2519 -0.0622 4.3078 49 1 2.4321 1.0986 2.2969 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733682922.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:25:08 Heat of formation + Delta-G solvation = -64.273772 kcal Electronic energy + Delta-G solvation = -29704.134586 eV Core-core repulsion = 25629.812164 eV Total energy + Delta-G solvation = -4074.322421 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.29636 -40.70128 -39.86696 -37.66260 -37.27354 -35.81102 -34.42469 -33.95401 -31.95577 -31.66782 -30.12108 -29.61796 -27.37528 -26.39981 -25.82603 -23.96940 -23.51230 -22.83480 -22.58030 -21.16653 -20.54278 -19.40244 -18.75064 -18.37232 -17.44033 -17.08091 -16.85817 -16.60884 -16.27915 -16.09012 -15.69129 -15.58488 -15.11002 -15.04861 -14.90927 -14.74669 -14.63315 -14.45650 -14.28501 -13.87582 -13.75218 -13.48010 -13.44946 -13.36135 -13.20751 -12.99718 -12.80015 -12.73090 -12.50426 -12.31224 -12.15902 -12.13392 -12.03549 -11.62105 -11.55387 -11.22675 -11.01540 -10.87210 -10.21946 -10.16541 -9.81337 -9.56715 -9.03806 -7.94861 -5.23691 0.27971 0.51048 1.14476 1.46366 1.48226 1.51689 1.56491 2.13441 2.35740 2.55421 2.90013 3.14505 3.34840 3.39385 3.56622 3.66753 3.84896 3.89224 3.96332 4.02453 4.07092 4.12862 4.32310 4.38927 4.51603 4.57657 4.62131 4.67401 4.72390 4.75497 4.75942 4.77124 4.99350 5.00870 5.04102 5.08852 5.10164 5.14807 5.19774 5.27176 5.40160 5.49446 5.53340 5.60263 5.69307 5.81723 5.89380 6.07720 6.27148 6.35472 6.99985 7.09918 7.33009 8.07701 8.31750 9.28851 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.021943 B = 0.001977 C = 0.001968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.698469 B =14159.607178 C =14222.175500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.199 3.801 3 H 0.057 0.943 4 N -0.736 5.736 5 C -0.238 4.238 6 H 0.079 0.921 7 C -0.079 4.079 8 N -0.971 5.971 9 Si 0.974 3.026 10 H -0.288 1.288 11 H -0.297 1.297 12 H -0.268 1.268 13 C -0.073 4.073 14 C -0.124 4.124 15 C -0.102 4.102 16 C -0.119 4.119 17 C 0.171 3.829 18 N -0.712 5.712 19 C 0.532 3.468 20 O -0.557 6.557 21 C -0.118 4.118 22 C -0.128 4.128 23 C -0.112 4.112 24 C 0.095 3.905 25 N -0.719 5.719 26 C 0.522 3.478 27 O -0.559 6.559 28 C -0.091 4.091 29 C -0.120 4.120 30 H 0.070 0.930 31 H 0.043 0.957 32 H 0.037 0.963 33 H 0.373 0.627 34 H 0.250 0.750 35 H 0.101 0.899 36 H 0.124 0.876 37 H 0.068 0.932 38 H 0.089 0.911 39 H 0.410 0.590 40 H 0.061 0.939 41 H 0.086 0.914 42 H 0.088 0.912 43 H 0.105 0.895 44 H 0.119 0.881 45 H 0.119 0.881 46 H 0.071 0.929 47 H 0.420 0.580 48 H 0.152 0.848 49 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.463 -4.388 32.501 32.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.091 3.909 3 H 0.075 0.925 4 N -0.377 5.377 5 C -0.369 4.369 6 H 0.097 0.903 7 C -0.271 4.271 8 N -0.622 5.622 9 Si 0.803 3.197 10 H -0.215 1.215 11 H -0.224 1.224 12 H -0.193 1.193 13 C -0.074 4.074 14 C -0.143 4.143 15 C -0.121 4.121 16 C -0.119 4.119 17 C 0.049 3.951 18 N -0.363 5.363 19 C 0.317 3.683 20 O -0.436 6.436 21 C -0.125 4.125 22 C -0.186 4.186 23 C -0.150 4.150 24 C -0.028 4.028 25 N -0.374 5.374 26 C 0.306 3.694 27 O -0.437 6.437 28 C -0.109 4.109 29 C -0.139 4.139 30 H 0.089 0.911 31 H 0.062 0.938 32 H 0.056 0.944 33 H 0.207 0.793 34 H 0.059 0.941 35 H 0.119 0.881 36 H 0.142 0.858 37 H 0.087 0.913 38 H 0.107 0.893 39 H 0.246 0.754 40 H 0.080 0.920 41 H 0.105 0.895 42 H 0.107 0.893 43 H 0.123 0.877 44 H 0.137 0.863 45 H 0.137 0.863 46 H 0.090 0.910 47 H 0.260 0.740 48 H 0.170 0.830 49 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -3.003 -4.243 32.181 32.598 hybrid contribution -0.445 -0.555 -2.024 2.145 sum -3.448 -4.797 30.158 30.731 Atomic orbital electron populations 1.22262 0.96854 1.00777 1.00992 1.19424 0.92979 0.94767 0.83691 0.92464 1.42747 1.78511 1.10496 1.05924 1.19651 1.34811 0.94424 0.88063 0.90349 1.25573 1.02995 0.96929 1.01558 1.69827 1.52637 1.10374 1.29401 0.85132 0.77894 0.77423 0.79275 1.21475 1.22408 1.19265 1.20340 0.97298 0.94034 0.95748 1.20947 1.00754 0.94640 0.97962 1.21102 0.98039 1.00030 0.92894 1.19769 1.02750 0.94236 0.95165 1.20124 0.88457 0.99767 0.86783 1.46147 1.12572 1.59081 1.18456 1.20121 0.89411 0.77011 0.81728 1.90688 1.25074 1.52441 1.75393 1.21697 0.93942 0.99546 0.97308 1.21735 1.01466 0.92518 1.02891 1.22862 1.04984 0.92242 0.94902 1.22421 0.89605 0.98301 0.92494 1.46245 1.37102 1.10572 1.43464 1.20656 0.83337 0.84521 0.80885 1.90781 1.39840 1.79517 1.33579 1.21245 0.97990 0.93337 0.98309 1.21228 0.99230 1.00787 0.92620 0.91089 0.93752 0.94356 0.79337 0.94118 0.88052 0.85766 0.91345 0.89296 0.75424 0.91964 0.89496 0.89289 0.87688 0.86257 0.86264 0.91043 0.73960 0.82988 0.84041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.46 9.46 71.98 0.68 -4.78 16 2 C 0.20 8.07 3.09 44.24 0.14 8.21 16 3 H 0.06 2.28 7.94 -2.38 -0.02 2.26 16 4 N -0.74 -37.96 5.07 -326.50 -1.66 -39.62 16 5 C -0.24 -13.35 9.93 84.03 0.83 -12.52 16 6 H 0.08 4.19 7.83 -2.91 -0.02 4.17 16 7 C -0.08 -4.59 5.50 84.86 0.47 -4.12 16 8 N -0.97 -60.68 13.06 21.65 0.28 -60.40 16 9 Si 0.97 46.82 29.55 68.60 2.03 48.85 16 10 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 11 H -0.30 -14.45 7.11 99.48 0.71 -13.74 16 12 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 13 C -0.07 -2.58 4.95 -19.87 -0.10 -2.68 16 14 C -0.12 -4.49 9.05 22.27 0.20 -4.28 16 15 C -0.10 -3.07 9.70 22.27 0.22 -2.85 16 16 C -0.12 -2.96 5.25 -19.87 -0.10 -3.06 16 17 C 0.17 3.70 5.80 85.63 0.50 4.20 16 18 N -0.71 -14.60 5.41 -466.79 -2.52 -17.12 16 19 C 0.53 10.79 6.55 87.66 0.57 11.36 16 20 O -0.56 -13.88 15.46 -3.01 -0.05 -13.93 16 21 C -0.12 -1.73 0.74 -52.93 -0.04 -1.77 16 22 C -0.13 -1.42 8.31 71.98 0.60 -0.83 16 23 C -0.11 -0.95 6.06 31.77 0.19 -0.76 16 24 C 0.10 0.71 7.79 86.95 0.68 1.39 16 25 N -0.72 -8.98 6.24 -459.21 -2.87 -11.84 16 26 C 0.52 9.82 7.13 87.90 0.63 10.45 16 27 O -0.56 -15.01 17.83 -3.03 -0.05 -15.07 16 28 C -0.09 -2.12 9.70 22.27 0.22 -1.90 16 29 C -0.12 -3.36 9.67 22.27 0.22 -3.14 16 30 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 31 H 0.04 1.71 8.14 -2.38 -0.02 1.69 16 32 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.37 20.75 6.08 -92.70 -0.56 20.19 16 34 H 0.25 15.16 8.31 -92.71 -0.77 14.39 16 35 H 0.10 4.12 6.93 -2.91 -0.02 4.10 16 36 H 0.12 3.46 8.06 -2.91 -0.02 3.44 16 37 H 0.07 1.59 8.09 -2.39 -0.02 1.57 16 38 H 0.09 1.75 8.09 -2.39 -0.02 1.73 16 39 H 0.41 8.49 7.86 -92.71 -0.73 7.76 16 40 H 0.06 0.84 7.59 -2.39 -0.02 0.82 16 41 H 0.09 0.72 8.14 -2.38 -0.02 0.70 16 42 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 43 H 0.10 1.08 6.94 -2.39 -0.02 1.07 16 44 H 0.12 0.36 7.92 -2.38 -0.02 0.34 16 45 H 0.12 0.12 8.14 -2.38 -0.02 0.11 16 46 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 47 H 0.42 4.13 8.96 -92.71 -0.83 3.30 16 48 H 0.15 2.55 8.06 -2.91 -0.02 2.53 16 49 H 0.14 3.32 8.04 -2.91 -0.02 3.30 16 Total: -1.00 -75.80 406.32 -0.08 -75.88 By element: Atomic # 1 Polarization: 41.45 SS G_CDS: -1.13 Total: 40.32 kcal Atomic # 6 Polarization: -12.97 SS G_CDS: 5.89 Total: -7.08 kcal Atomic # 7 Polarization: -122.22 SS G_CDS: -6.76 Total: -128.98 kcal Atomic # 8 Polarization: -28.89 SS G_CDS: -0.10 Total: -28.99 kcal Atomic # 14 Polarization: 46.82 SS G_CDS: 2.03 Total: 48.85 kcal Total: -75.80 -0.08 -75.88 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733682922.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.608 kcal (2) G-P(sol) polarization free energy of solvation -75.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds