Wall clock time and date at job start Wed Apr 1 2020 04:51:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.46824 * 2 1 4 4 C 1.53005 * 109.46804 * 240.00284 * 2 1 3 5 5 C 1.50694 * 109.47238 * 65.00007 * 4 2 1 6 6 N 1.34779 * 120.00333 * 180.02562 * 5 4 2 7 7 O 1.21290 * 120.00117 * 359.97438 * 5 4 2 8 8 C 1.50695 * 109.47255 * 119.99954 * 2 1 3 9 9 O 1.21285 * 119.99863 * 119.99942 * 8 2 1 10 10 N 1.34772 * 120.00249 * 300.00258 * 8 2 1 11 11 C 1.46503 * 119.99857 * 180.27649 * 10 8 2 12 12 C 1.53004 * 109.47057 * 183.98286 * 11 10 8 13 13 H 1.09000 * 109.43314 * 298.82246 * 12 11 10 14 14 C 1.50804 * 109.43953 * 178.90223 * 12 11 10 15 15 C 1.38836 * 117.80243 * 48.41108 * 14 12 11 16 16 C 1.37967 * 120.50622 * 179.50339 * 15 14 12 17 17 C 1.38270 * 119.71280 * 359.93143 * 16 15 14 18 18 C 1.37909 * 119.82657 * 0.26101 * 17 16 15 19 19 C 1.37667 * 122.34912 * 228.34684 * 14 12 11 20 20 C 1.50597 * 122.86070 * 1.51162 * 19 14 12 21 21 C 1.52794 * 110.85353 * 339.80584 * 20 19 14 22 22 N 1.46684 * 109.43944 * 58.69201 * 12 11 10 23 23 C 1.36948 * 121.33251 * 344.48089 * 22 12 11 24 24 H 1.07993 * 119.99951 * 44.76715 * 23 22 12 25 25 C 1.38810 * 119.99657 * 224.76596 * 23 22 12 26 26 N 1.31621 * 119.99636 * 202.74747 * 25 23 22 27 27 Si 1.86802 * 120.00210 * 22.74962 * 25 23 22 28 28 H 1.48505 * 109.46970 * 84.47598 * 27 25 23 29 29 H 1.48493 * 109.47024 * 204.48086 * 27 25 23 30 30 H 1.48501 * 109.46980 * 324.48242 * 27 25 23 31 31 H 1.08992 * 109.47571 * 59.99780 * 1 2 3 32 32 H 1.09000 * 109.46824 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.46845 * 299.99924 * 1 2 3 34 34 H 1.09002 * 109.46481 * 184.99591 * 4 2 1 35 35 H 1.08996 * 109.47087 * 304.99472 * 4 2 1 36 36 H 0.97006 * 119.99374 * 359.97438 * 6 5 4 37 37 H 0.96998 * 120.00700 * 179.97438 * 6 5 4 38 38 H 0.96995 * 119.99765 * 359.97438 * 10 8 2 39 39 H 1.08997 * 109.47213 * 303.97552 * 11 10 8 40 40 H 1.08997 * 109.47616 * 63.98326 * 11 10 8 41 41 H 1.08002 * 119.75119 * 359.48017 * 15 14 12 42 42 H 1.07992 * 120.14123 * 179.90533 * 16 15 14 43 43 H 1.07993 * 120.08625 * 180.24887 * 17 16 15 44 44 H 1.08005 * 119.70674 * 180.02562 * 18 17 16 45 45 H 1.08997 * 109.20294 * 100.16170 * 20 19 14 46 46 H 1.09000 * 109.20044 * 219.45686 * 20 19 14 47 47 H 1.09002 * 109.77098 * 167.07398 * 21 20 19 48 48 H 1.08997 * 109.77542 * 287.86727 * 21 20 19 49 49 H 0.97009 * 119.99694 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6413 0.0571 -2.4766 6 7 1.9843 -0.3918 -3.7003 7 8 1.0109 1.0871 -2.3633 8 6 2.0324 -0.7104 1.2304 9 8 2.7297 -1.6965 1.1191 10 7 1.7068 -0.2500 2.4545 11 6 2.2003 -0.9371 3.6506 12 6 1.6092 -0.2772 4.8982 13 1 1.9261 0.7648 4.9419 14 6 2.0962 -1.0019 6.1277 15 6 3.4563 -1.2610 6.2306 16 6 3.9637 -1.9114 7.3365 17 6 3.1107 -2.3068 8.3503 18 6 1.7590 -2.0535 8.2473 19 6 1.2443 -1.4042 7.1315 20 6 -0.2449 -1.1869 7.0754 21 6 -0.5961 -0.0807 6.0815 22 7 0.1450 -0.3391 4.8359 23 6 -0.5066 -0.6258 3.6660 24 1 -0.1589 -1.4326 3.0380 25 6 -1.6139 0.1208 3.2874 26 7 -2.4951 -0.3866 2.4517 27 14 -1.8533 1.8455 3.9639 28 1 -1.0839 2.8118 3.1395 29 1 -3.2953 2.1976 3.9227 30 1 -1.3708 1.8981 5.3673 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 3.1263 -0.7994 -1.2057 35 1 1.6054 -1.7198 -1.2952 36 1 2.4882 -1.2157 -3.7909 37 1 1.7274 0.1090 -4.4903 38 1 1.1495 0.5388 2.5435 39 1 1.9009 -1.9846 3.6174 40 1 3.2877 -0.8709 3.6852 41 1 4.1223 -0.9513 5.4388 42 1 5.0224 -2.1112 7.4097 43 1 3.5019 -2.8128 9.2205 44 1 1.0945 -2.3628 9.0406 45 1 -0.7310 -2.1127 6.7678 46 1 -0.6038 -0.9062 8.0656 47 1 -1.6676 -0.0909 5.8819 48 1 -0.3055 0.8874 6.4894 49 1 -3.2688 0.1353 2.1869 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733908126.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:00 Heat of formation + Delta-G solvation = -28.431371 kcal Electronic energy + Delta-G solvation = -31574.390874 eV Core-core repulsion = 27501.622696 eV Total energy + Delta-G solvation = -4072.768178 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -39.99023 -39.60509 -38.64788 -36.49758 -34.22234 -33.71144 -33.60426 -32.48488 -31.98928 -30.46022 -28.99719 -27.55239 -26.52752 -24.87612 -23.18917 -22.86903 -21.99041 -21.01310 -20.35958 -19.44174 -19.01545 -17.38278 -17.14884 -16.54523 -16.14642 -15.72726 -15.57228 -15.29294 -15.19960 -14.74643 -14.70341 -14.35697 -14.01586 -13.80156 -13.35464 -13.19635 -12.99174 -12.80367 -12.65859 -12.39642 -12.26349 -12.20222 -11.93911 -11.89338 -11.41665 -11.36445 -11.15869 -10.97046 -10.81865 -10.64647 -10.58415 -10.41683 -10.09322 -9.86880 -9.78034 -9.64818 -9.63289 -9.04481 -8.61638 -8.46040 -8.16197 -8.14809 -6.79246 -6.08817 -3.58536 1.68122 1.71571 2.74569 3.28044 3.33239 3.41965 3.45344 3.51327 4.01914 4.11974 4.45001 4.77821 4.89689 5.11213 5.13655 5.22072 5.25515 5.28199 5.33083 5.36980 5.56362 5.59725 5.69570 5.81459 5.87617 5.94071 5.99890 6.04991 6.06095 6.08655 6.14048 6.24390 6.35890 6.43331 6.61653 6.63916 6.66048 6.69878 6.77106 6.78366 6.82846 6.84220 7.10021 7.16746 7.24023 7.32900 7.34868 7.94434 8.32266 8.34365 8.36643 8.84463 8.97083 9.57844 10.06453 11.03234 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011994 B = 0.003887 C = 0.003091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2333.998162 B = 7201.597976 C = 9055.894614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.092 4.092 3 H 0.094 0.906 4 C -0.121 4.121 5 C 0.517 3.483 6 N -0.861 5.861 7 O -0.537 6.537 8 C 0.517 3.483 9 O -0.572 6.572 10 N -0.688 5.688 11 C 0.141 3.859 12 C 0.193 3.807 13 H 0.047 0.953 14 C -0.077 4.077 15 C -0.118 4.118 16 C -0.132 4.132 17 C -0.128 4.128 18 C -0.129 4.129 19 C -0.050 4.050 20 C -0.103 4.103 21 C 0.143 3.857 22 N -0.599 5.599 23 C -0.272 4.272 24 H 0.084 0.916 25 C 0.052 3.948 26 N -0.880 5.880 27 Si 0.844 3.156 28 H -0.284 1.284 29 H -0.297 1.297 30 H -0.255 1.255 31 H 0.069 0.931 32 H 0.057 0.943 33 H 0.078 0.922 34 H 0.098 0.902 35 H 0.100 0.900 36 H 0.401 0.599 37 H 0.397 0.603 38 H 0.412 0.588 39 H 0.069 0.931 40 H 0.056 0.944 41 H 0.120 0.880 42 H 0.115 0.885 43 H 0.114 0.886 44 H 0.114 0.886 45 H 0.077 0.923 46 H 0.061 0.939 47 H 0.071 0.929 48 H 0.033 0.967 49 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.232 -0.835 0.088 10.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.114 4.114 3 H 0.112 0.888 4 C -0.161 4.161 5 C 0.303 3.697 6 N -0.425 5.425 7 O -0.414 6.414 8 C 0.303 3.697 9 O -0.453 6.453 10 N -0.339 5.339 11 C 0.017 3.983 12 C 0.086 3.914 13 H 0.064 0.936 14 C -0.079 4.079 15 C -0.137 4.137 16 C -0.150 4.150 17 C -0.146 4.146 18 C -0.148 4.148 19 C -0.051 4.051 20 C -0.142 4.142 21 C 0.017 3.983 22 N -0.324 5.324 23 C -0.400 4.400 24 H 0.102 0.898 25 C -0.151 4.151 26 N -0.519 5.519 27 Si 0.671 3.329 28 H -0.211 1.211 29 H -0.224 1.224 30 H -0.180 1.180 31 H 0.088 0.912 32 H 0.076 0.924 33 H 0.096 0.904 34 H 0.116 0.884 35 H 0.118 0.882 36 H 0.229 0.771 37 H 0.228 0.772 38 H 0.250 0.750 39 H 0.087 0.913 40 H 0.074 0.926 41 H 0.138 0.862 42 H 0.133 0.867 43 H 0.132 0.868 44 H 0.132 0.868 45 H 0.095 0.905 46 H 0.079 0.921 47 H 0.089 0.911 48 H 0.051 0.949 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 10.106 -0.859 0.177 10.144 hybrid contribution -0.400 0.990 0.072 1.070 sum 9.707 0.131 0.248 9.711 Atomic orbital electron populations 1.21835 0.90687 1.03217 1.04100 1.20977 0.99455 0.99908 0.91060 0.88782 1.21439 1.03260 1.00227 0.91181 1.20835 0.78182 0.85403 0.85279 1.43912 1.60675 1.29618 1.08297 1.90730 1.39225 1.24715 1.86704 1.20396 0.79770 0.84523 0.84963 1.90606 1.40148 1.27219 1.87313 1.45969 1.51401 1.32086 1.04408 1.21213 0.96004 0.97585 0.83505 1.19649 0.86411 0.95563 0.89735 0.93598 1.20111 0.92863 0.98442 0.96476 1.21153 0.94870 0.99623 0.98013 1.20953 0.99222 1.00215 0.94604 1.20942 0.93738 1.01072 0.98878 1.21177 0.95307 1.00167 0.98104 1.19603 0.95952 0.96457 0.93044 1.21051 0.91226 1.02029 0.99846 1.21427 0.96839 0.93856 0.86135 1.44286 0.98840 1.83312 1.05917 1.18722 1.10348 1.12849 0.98072 0.89817 1.25591 0.96627 0.97194 0.95728 1.69888 1.10530 1.36371 1.35106 0.87508 0.76761 0.87684 0.80927 1.21103 1.22360 1.17984 0.91220 0.92394 0.90356 0.88414 0.88152 0.77141 0.77243 0.74973 0.91268 0.92552 0.86245 0.86660 0.86825 0.86751 0.90470 0.92096 0.91084 0.94914 0.92552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.71 8.83 37.16 0.33 -2.38 16 2 C -0.09 -1.56 2.37 -91.77 -0.22 -1.78 16 3 H 0.09 1.53 7.96 -51.93 -0.41 1.12 16 4 C -0.12 -1.68 4.52 -27.88 -0.13 -1.81 16 5 C 0.52 7.03 7.82 -10.99 -0.09 6.94 16 6 N -0.86 -7.72 8.87 31.22 0.28 -7.44 16 7 O -0.54 -9.43 14.80 5.55 0.08 -9.35 16 8 C 0.52 9.84 7.15 -10.99 -0.08 9.76 16 9 O -0.57 -11.97 15.92 5.55 0.09 -11.88 16 10 N -0.69 -13.12 3.52 -60.29 -0.21 -13.33 16 11 C 0.14 2.62 4.13 -4.04 -0.02 2.60 16 12 C 0.19 3.56 3.07 -68.93 -0.21 3.35 16 13 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 14 C -0.08 -1.32 5.44 -104.56 -0.57 -1.89 16 15 C -0.12 -1.76 9.06 -39.46 -0.36 -2.12 16 16 C -0.13 -1.76 10.05 -39.67 -0.40 -2.16 16 17 C -0.13 -1.70 10.04 -39.69 -0.40 -2.10 16 18 C -0.13 -1.88 9.59 -39.43 -0.38 -2.26 16 19 C -0.05 -0.85 5.76 -104.61 -0.60 -1.45 16 20 C -0.10 -1.76 5.86 -28.04 -0.16 -1.92 16 21 C 0.14 2.81 4.24 -3.75 -0.02 2.80 16 22 N -0.60 -12.61 2.37 -166.32 -0.39 -13.00 16 23 C -0.27 -6.51 6.77 -15.05 -0.10 -6.61 16 24 H 0.08 2.27 6.63 -52.49 -0.35 1.92 16 25 C 0.05 1.29 4.40 -17.43 -0.08 1.22 16 26 N -0.88 -23.71 13.97 55.49 0.78 -22.93 16 27 Si 0.84 19.32 26.82 -169.99 -4.56 14.76 16 28 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 29 H -0.30 -7.15 7.11 56.52 0.40 -6.75 16 30 H -0.26 -5.52 4.68 56.52 0.26 -5.25 16 31 H 0.07 1.34 5.95 -51.93 -0.31 1.03 16 32 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 33 H 0.08 1.69 6.82 -51.93 -0.35 1.33 16 34 H 0.10 1.23 7.96 -51.93 -0.41 0.82 16 35 H 0.10 1.39 8.14 -51.93 -0.42 0.96 16 36 H 0.40 2.42 8.83 -40.82 -0.36 2.06 16 37 H 0.40 3.09 8.93 -40.82 -0.36 2.73 16 38 H 0.41 8.14 6.55 -40.82 -0.27 7.87 16 39 H 0.07 1.47 7.87 -51.93 -0.41 1.06 16 40 H 0.06 0.94 6.68 -51.93 -0.35 0.60 16 41 H 0.12 1.60 6.70 -52.49 -0.35 1.25 16 42 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 43 H 0.11 1.21 8.06 -52.49 -0.42 0.78 16 44 H 0.11 1.43 8.05 -52.48 -0.42 1.01 16 45 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 46 H 0.06 0.89 8.11 -51.93 -0.42 0.47 16 47 H 0.07 1.50 6.20 -51.93 -0.32 1.17 16 48 H 0.03 0.64 7.11 -51.93 -0.37 0.27 16 49 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 381.62 15.07 5.75 5.75 Total: -1.00 -30.43 381.62 -8.94 -39.37 By element: Atomic # 1 Polarization: 25.14 SS G_CDS: -7.28 Total: 17.86 kcal Atomic # 6 Polarization: 3.65 SS G_CDS: -3.47 Total: 0.18 kcal Atomic # 7 Polarization: -57.15 SS G_CDS: 0.45 Total: -56.70 kcal Atomic # 8 Polarization: -21.40 SS G_CDS: 0.17 Total: -21.23 kcal Atomic # 14 Polarization: 19.32 SS G_CDS: -4.56 Total: 14.76 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -30.43 -8.94 -39.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733908126.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.943 kcal (2) G-P(sol) polarization free energy of solvation -30.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds