Wall clock time and date at job start Wed Apr 1 2020 04:50:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.46824 * 2 1 4 4 C 1.53005 * 109.46804 * 240.00284 * 2 1 3 5 5 C 1.50694 * 109.47238 * 65.00007 * 4 2 1 6 6 N 1.34779 * 120.00333 * 180.02562 * 5 4 2 7 7 O 1.21290 * 120.00117 * 359.97438 * 5 4 2 8 8 C 1.50695 * 109.47255 * 119.99954 * 2 1 3 9 9 O 1.21285 * 119.99863 * 119.99942 * 8 2 1 10 10 N 1.34772 * 120.00249 * 300.00258 * 8 2 1 11 11 C 1.46503 * 119.99857 * 180.27649 * 10 8 2 12 12 C 1.53004 * 109.47057 * 183.98286 * 11 10 8 13 13 H 1.09000 * 109.43314 * 298.82246 * 12 11 10 14 14 C 1.50804 * 109.43953 * 178.90223 * 12 11 10 15 15 C 1.38836 * 117.80243 * 48.41108 * 14 12 11 16 16 C 1.37967 * 120.50622 * 179.50339 * 15 14 12 17 17 C 1.38270 * 119.71280 * 359.93143 * 16 15 14 18 18 C 1.37909 * 119.82657 * 0.26101 * 17 16 15 19 19 C 1.37667 * 122.34912 * 228.34684 * 14 12 11 20 20 C 1.50597 * 122.86070 * 1.51162 * 19 14 12 21 21 C 1.52794 * 110.85353 * 339.80584 * 20 19 14 22 22 N 1.46684 * 109.43944 * 58.69201 * 12 11 10 23 23 C 1.36948 * 121.33251 * 344.48089 * 22 12 11 24 24 H 1.07993 * 119.99951 * 44.76715 * 23 22 12 25 25 C 1.38810 * 119.99657 * 224.76596 * 23 22 12 26 26 N 1.31621 * 119.99636 * 202.74747 * 25 23 22 27 27 Si 1.86802 * 120.00210 * 22.74962 * 25 23 22 28 28 H 1.48505 * 109.46970 * 84.47598 * 27 25 23 29 29 H 1.48493 * 109.47024 * 204.48086 * 27 25 23 30 30 H 1.48501 * 109.46980 * 324.48242 * 27 25 23 31 31 H 1.08992 * 109.47571 * 59.99780 * 1 2 3 32 32 H 1.09000 * 109.46824 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.46845 * 299.99924 * 1 2 3 34 34 H 1.09002 * 109.46481 * 184.99591 * 4 2 1 35 35 H 1.08996 * 109.47087 * 304.99472 * 4 2 1 36 36 H 0.97006 * 119.99374 * 359.97438 * 6 5 4 37 37 H 0.96998 * 120.00700 * 179.97438 * 6 5 4 38 38 H 0.96995 * 119.99765 * 359.97438 * 10 8 2 39 39 H 1.08997 * 109.47213 * 303.97552 * 11 10 8 40 40 H 1.08997 * 109.47616 * 63.98326 * 11 10 8 41 41 H 1.08002 * 119.75119 * 359.48017 * 15 14 12 42 42 H 1.07992 * 120.14123 * 179.90533 * 16 15 14 43 43 H 1.07993 * 120.08625 * 180.24887 * 17 16 15 44 44 H 1.08005 * 119.70674 * 180.02562 * 18 17 16 45 45 H 1.08997 * 109.20294 * 100.16170 * 20 19 14 46 46 H 1.09000 * 109.20044 * 219.45686 * 20 19 14 47 47 H 1.09002 * 109.77098 * 167.07398 * 21 20 19 48 48 H 1.08997 * 109.77542 * 287.86727 * 21 20 19 49 49 H 0.97009 * 119.99694 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6413 0.0571 -2.4766 6 7 1.9843 -0.3918 -3.7003 7 8 1.0109 1.0871 -2.3633 8 6 2.0324 -0.7104 1.2304 9 8 2.7297 -1.6965 1.1191 10 7 1.7068 -0.2500 2.4545 11 6 2.2003 -0.9371 3.6506 12 6 1.6092 -0.2772 4.8982 13 1 1.9261 0.7648 4.9419 14 6 2.0962 -1.0019 6.1277 15 6 3.4563 -1.2610 6.2306 16 6 3.9637 -1.9114 7.3365 17 6 3.1107 -2.3068 8.3503 18 6 1.7590 -2.0535 8.2473 19 6 1.2443 -1.4042 7.1315 20 6 -0.2449 -1.1869 7.0754 21 6 -0.5961 -0.0807 6.0815 22 7 0.1450 -0.3391 4.8359 23 6 -0.5066 -0.6258 3.6660 24 1 -0.1589 -1.4326 3.0380 25 6 -1.6139 0.1208 3.2874 26 7 -2.4951 -0.3866 2.4517 27 14 -1.8533 1.8455 3.9639 28 1 -1.0839 2.8118 3.1395 29 1 -3.2953 2.1976 3.9227 30 1 -1.3708 1.8981 5.3673 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 3.1263 -0.7994 -1.2057 35 1 1.6054 -1.7198 -1.2952 36 1 2.4882 -1.2157 -3.7909 37 1 1.7274 0.1090 -4.4903 38 1 1.1495 0.5388 2.5435 39 1 1.9009 -1.9846 3.6174 40 1 3.2877 -0.8709 3.6852 41 1 4.1223 -0.9513 5.4388 42 1 5.0224 -2.1112 7.4097 43 1 3.5019 -2.8128 9.2205 44 1 1.0945 -2.3628 9.0406 45 1 -0.7310 -2.1127 6.7678 46 1 -0.6038 -0.9062 8.0656 47 1 -1.6676 -0.0909 5.8819 48 1 -0.3055 0.8874 6.4894 49 1 -3.2688 0.1353 2.1869 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733908126.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:50:59 Heat of formation + Delta-G solvation = -49.225927 kcal Electronic energy + Delta-G solvation = -31575.292594 eV Core-core repulsion = 27501.622696 eV Total energy + Delta-G solvation = -4073.669898 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.37339 -40.82657 -39.99107 -37.95737 -35.71657 -35.13693 -34.61591 -34.24740 -33.34057 -31.97612 -30.27656 -28.88467 -28.03853 -26.50431 -24.63932 -24.26710 -23.41206 -22.29252 -21.60393 -20.85906 -20.46331 -18.77668 -18.25716 -17.95977 -17.44218 -17.30324 -16.84348 -16.76670 -16.50687 -16.33482 -16.05179 -15.72228 -15.40999 -15.10857 -14.75036 -14.70228 -14.40126 -14.25628 -14.09139 -13.80794 -13.76432 -13.68956 -13.45154 -13.29481 -12.88049 -12.78174 -12.62899 -12.55154 -12.37383 -12.08158 -12.04657 -11.96815 -11.57731 -11.47057 -11.36039 -10.97208 -10.68764 -10.53223 -10.48949 -9.77506 -9.59189 -9.35933 -8.55025 -8.07148 -5.53253 0.55213 0.57617 1.41476 1.52541 1.56085 1.66469 1.76996 2.31303 2.52681 2.80567 2.94002 3.10297 3.35590 3.65426 3.90015 3.94488 4.02677 4.07350 4.08077 4.21324 4.25898 4.31513 4.40535 4.47051 4.48328 4.53664 4.65746 4.74388 4.75792 4.79323 4.83660 4.89742 5.02790 5.06751 5.13485 5.15810 5.20315 5.23097 5.38967 5.49037 5.63834 5.67976 5.70781 5.88380 5.96580 6.03525 6.23223 6.40502 6.48091 6.75265 7.00870 7.37866 7.40896 7.66570 8.19864 9.08135 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011994 B = 0.003887 C = 0.003091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2333.998162 B = 7201.597976 C = 9055.894614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.087 4.087 3 H 0.103 0.897 4 C -0.115 4.115 5 C 0.519 3.481 6 N -0.835 5.835 7 O -0.582 6.582 8 C 0.515 3.485 9 O -0.590 6.590 10 N -0.690 5.690 11 C 0.149 3.851 12 C 0.196 3.804 13 H 0.053 0.947 14 C -0.101 4.101 15 C -0.125 4.125 16 C -0.128 4.128 17 C -0.123 4.123 18 C -0.132 4.132 19 C -0.075 4.075 20 C -0.094 4.094 21 C 0.139 3.861 22 N -0.610 5.610 23 C -0.242 4.242 24 H 0.046 0.954 25 C 0.016 3.984 26 N -0.922 5.922 27 Si 0.891 3.109 28 H -0.288 1.288 29 H -0.313 1.313 30 H -0.233 1.233 31 H 0.069 0.931 32 H 0.036 0.964 33 H 0.051 0.949 34 H 0.117 0.883 35 H 0.101 0.899 36 H 0.418 0.582 37 H 0.408 0.592 38 H 0.408 0.592 39 H 0.037 0.963 40 H 0.079 0.921 41 H 0.131 0.869 42 H 0.146 0.854 43 H 0.147 0.853 44 H 0.134 0.866 45 H 0.060 0.940 46 H 0.088 0.912 47 H 0.052 0.948 48 H 0.041 0.959 49 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.963 -0.963 1.598 13.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.108 4.108 3 H 0.121 0.879 4 C -0.155 4.155 5 C 0.305 3.695 6 N -0.400 5.400 7 O -0.462 6.462 8 C 0.302 3.698 9 O -0.472 6.472 10 N -0.339 5.339 11 C 0.025 3.975 12 C 0.091 3.909 13 H 0.071 0.929 14 C -0.102 4.102 15 C -0.143 4.143 16 C -0.146 4.146 17 C -0.141 4.141 18 C -0.150 4.150 19 C -0.076 4.076 20 C -0.132 4.132 21 C 0.014 3.986 22 N -0.336 5.336 23 C -0.371 4.371 24 H 0.064 0.936 25 C -0.183 4.183 26 N -0.564 5.564 27 Si 0.719 3.281 28 H -0.215 1.215 29 H -0.241 1.241 30 H -0.157 1.157 31 H 0.088 0.912 32 H 0.055 0.945 33 H 0.070 0.930 34 H 0.136 0.864 35 H 0.120 0.880 36 H 0.249 0.751 37 H 0.240 0.760 38 H 0.245 0.755 39 H 0.055 0.945 40 H 0.097 0.903 41 H 0.148 0.852 42 H 0.164 0.836 43 H 0.164 0.836 44 H 0.152 0.848 45 H 0.078 0.922 46 H 0.106 0.894 47 H 0.070 0.930 48 H 0.059 0.941 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 12.892 -1.017 1.693 13.042 hybrid contribution -1.147 0.895 -0.360 1.499 sum 11.745 -0.122 1.333 11.821 Atomic orbital electron populations 1.21598 0.92526 1.01256 1.02668 1.20931 0.97535 1.00711 0.91635 0.87856 1.21379 1.04326 0.99773 0.90054 1.20706 0.77824 0.84719 0.86288 1.43649 1.59272 1.29921 1.07125 1.90720 1.41510 1.26631 1.87384 1.20735 0.79349 0.84249 0.85425 1.90583 1.41131 1.27942 1.87590 1.46015 1.51181 1.31851 1.04888 1.21177 0.97174 0.95614 0.83573 1.19682 0.84430 0.96198 0.90639 0.92927 1.20044 0.94186 1.00026 0.95989 1.21316 0.94004 0.99852 0.99163 1.21348 1.00911 0.98652 0.93653 1.21363 0.93093 0.99942 0.99712 1.21409 0.96495 0.99429 0.97653 1.19683 0.95434 0.98154 0.94294 1.20895 0.92104 1.00005 1.00244 1.21427 0.95599 0.95349 0.86216 1.44363 1.00258 1.83432 1.05501 1.18330 1.09640 1.10883 0.98284 0.93603 1.25908 0.96643 0.99497 0.96293 1.69997 1.11393 1.37367 1.37603 0.86752 0.75474 0.84340 0.81567 1.21464 1.24087 1.15671 0.91210 0.94515 0.93031 0.86448 0.88042 0.75090 0.76042 0.75450 0.94500 0.90340 0.85154 0.83614 0.83557 0.84768 0.92188 0.89372 0.92981 0.94143 0.93212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.97 8.83 71.98 0.64 -4.33 16 2 C -0.09 -2.97 2.37 -11.54 -0.03 -3.00 16 3 H 0.10 3.38 7.96 -2.39 -0.02 3.36 16 4 C -0.12 -3.13 4.52 29.85 0.13 -2.99 16 5 C 0.52 13.61 7.82 87.65 0.69 14.29 16 6 N -0.84 -13.31 8.87 -173.53 -1.54 -14.85 16 7 O -0.58 -20.38 14.80 -3.06 -0.05 -20.42 16 8 C 0.52 19.95 7.15 87.66 0.63 20.57 16 9 O -0.59 -24.79 15.92 -3.05 -0.05 -24.83 16 10 N -0.69 -26.99 3.52 -463.06 -1.63 -28.62 16 11 C 0.15 5.58 4.13 86.38 0.36 5.94 16 12 C 0.20 7.21 3.07 44.24 0.14 7.34 16 13 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 14 C -0.10 -3.32 5.44 -19.82 -0.11 -3.43 16 15 C -0.13 -3.43 9.06 22.35 0.20 -3.22 16 16 C -0.13 -2.92 10.05 22.21 0.22 -2.70 16 17 C -0.12 -2.74 10.04 22.20 0.22 -2.52 16 18 C -0.13 -3.42 9.59 22.37 0.21 -3.21 16 19 C -0.08 -2.41 5.76 -19.85 -0.11 -2.53 16 20 C -0.09 -3.13 5.86 29.75 0.17 -2.95 16 21 C 0.14 5.44 4.24 86.17 0.37 5.80 16 22 N -0.61 -26.06 2.37 -680.13 -1.61 -27.67 16 23 C -0.24 -12.07 6.77 84.03 0.57 -11.50 16 24 H 0.05 2.65 6.63 -2.91 -0.02 2.63 16 25 C 0.02 0.83 4.40 84.86 0.37 1.20 16 26 N -0.92 -52.25 13.97 21.65 0.30 -51.95 16 27 Si 0.89 40.96 26.82 68.60 1.84 42.80 16 28 H -0.29 -13.29 7.11 99.48 0.71 -12.59 16 29 H -0.31 -15.20 7.11 99.48 0.71 -14.49 16 30 H -0.23 -9.76 4.68 99.48 0.47 -9.29 16 31 H 0.07 2.81 5.95 -2.39 -0.01 2.79 16 32 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.05 2.34 6.82 -2.39 -0.02 2.32 16 34 H 0.12 2.75 7.96 -2.39 -0.02 2.73 16 35 H 0.10 2.75 8.14 -2.39 -0.02 2.73 16 36 H 0.42 3.98 8.83 -92.70 -0.82 3.16 16 37 H 0.41 5.51 8.93 -92.71 -0.83 4.68 16 38 H 0.41 16.64 6.55 -92.71 -0.61 16.04 16 39 H 0.04 1.62 7.87 -2.39 -0.02 1.60 16 40 H 0.08 2.57 6.68 -2.39 -0.02 2.56 16 41 H 0.13 3.18 6.70 -2.91 -0.02 3.16 16 42 H 0.15 2.43 8.06 -2.91 -0.02 2.41 16 43 H 0.15 2.31 8.06 -2.91 -0.02 2.28 16 44 H 0.13 2.87 8.05 -2.91 -0.02 2.85 16 45 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 46 H 0.09 2.41 8.11 -2.39 -0.02 2.39 16 47 H 0.05 2.21 6.20 -2.39 -0.01 2.19 16 48 H 0.04 1.52 7.11 -2.39 -0.02 1.51 16 49 H 0.26 14.37 8.31 -92.70 -0.77 13.60 16 Total: -1.00 -69.03 381.62 0.45 -68.58 By element: Atomic # 1 Polarization: 45.67 SS G_CDS: -1.49 Total: 44.19 kcal Atomic # 6 Polarization: 8.11 SS G_CDS: 4.67 Total: 12.78 kcal Atomic # 7 Polarization: -118.61 SS G_CDS: -4.48 Total: -123.09 kcal Atomic # 8 Polarization: -45.16 SS G_CDS: -0.09 Total: -45.26 kcal Atomic # 14 Polarization: 40.96 SS G_CDS: 1.84 Total: 42.80 kcal Total: -69.03 0.45 -68.58 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733908126.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.353 kcal (2) G-P(sol) polarization free energy of solvation -69.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds