Wall clock time and date at job start Wed Apr 1 2020 04:51:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47631 * 2 1 4 4 C 1.53000 * 109.46978 * 120.00368 * 2 1 3 5 5 C 1.50706 * 109.46939 * 294.99684 * 4 2 1 6 6 N 1.34777 * 120.00064 * 179.97438 * 5 4 2 7 7 O 1.21281 * 119.99615 * 0.02562 * 5 4 2 8 8 C 1.50705 * 109.47120 * 239.99756 * 2 1 3 9 9 O 1.21275 * 120.00105 * 240.00146 * 8 2 1 10 10 N 1.34772 * 120.00007 * 60.00508 * 8 2 1 11 11 C 1.46498 * 120.00235 * 179.97438 * 10 8 2 12 12 C 1.53000 * 109.46923 * 179.97438 * 11 10 8 13 13 H 1.08993 * 109.44311 * 65.00158 * 12 11 10 14 14 C 1.50816 * 109.43457 * 184.91784 * 12 11 10 15 15 C 1.38835 * 117.80387 * 288.53307 * 14 12 11 16 16 C 1.37960 * 120.50262 * 179.50107 * 15 14 12 17 17 C 1.38263 * 119.71890 * 359.93383 * 16 15 14 18 18 C 1.37914 * 119.82777 * 0.26245 * 17 16 15 19 19 C 1.37675 * 122.34603 * 108.46990 * 14 12 11 20 20 C 1.50598 * 122.85889 * 1.51415 * 19 14 12 21 21 C 1.52789 * 110.85670 * 339.80430 * 20 19 14 22 22 N 1.46682 * 109.43981 * 305.08058 * 12 11 10 23 23 C 1.36938 * 121.33540 * 104.33305 * 22 12 11 24 24 H 1.07998 * 119.99734 * 333.16209 * 23 22 12 25 25 C 1.38810 * 120.00049 * 153.15785 * 23 22 12 26 26 N 1.31615 * 120.00057 * 341.47753 * 25 23 22 27 27 Si 1.86799 * 119.99681 * 161.48326 * 25 23 22 28 28 H 1.48496 * 109.47497 * 359.97438 * 27 25 23 29 29 H 1.48502 * 109.47435 * 120.00010 * 27 25 23 30 30 H 1.48510 * 109.46816 * 239.99721 * 27 25 23 31 31 H 1.08995 * 109.47226 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.46893 * 59.99870 * 1 2 3 33 33 H 1.09004 * 109.46855 * 300.00294 * 1 2 3 34 34 H 1.08994 * 109.47537 * 54.99280 * 4 2 1 35 35 H 1.08997 * 109.47434 * 175.00360 * 4 2 1 36 36 H 0.97000 * 119.99929 * 0.02562 * 6 5 4 37 37 H 0.97003 * 120.00028 * 180.02562 * 6 5 4 38 38 H 0.97008 * 119.99915 * 359.97438 * 10 8 2 39 39 H 1.08993 * 109.47025 * 299.99965 * 11 10 8 40 40 H 1.08998 * 109.46864 * 60.00089 * 11 10 8 41 41 H 1.08000 * 119.75076 * 359.52852 * 15 14 12 42 42 H 1.07999 * 120.13984 * 179.90514 * 16 15 14 43 43 H 1.07997 * 120.08776 * 180.24105 * 17 16 15 44 44 H 1.07995 * 119.70678 * 180.02562 * 18 17 16 45 45 H 1.08999 * 109.19882 * 100.15930 * 20 19 14 46 46 H 1.09004 * 109.19492 * 219.49729 * 20 19 14 47 47 H 1.08994 * 109.76877 * 167.07599 * 21 20 19 48 48 H 1.08999 * 109.76988 * 287.81136 * 21 20 19 49 49 H 0.97005 * 120.00206 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6413 0.0570 2.4766 6 7 1.9844 -0.3920 3.7002 7 8 1.0110 1.0869 2.3633 8 6 2.0324 -0.7105 -1.2305 9 8 2.7296 -1.6965 -1.1192 10 7 1.7069 -0.2500 -2.4546 11 6 2.1956 -0.9403 -3.6507 12 6 1.6850 -0.2194 -4.8999 13 1 2.1192 0.7793 -4.9454 14 6 2.0867 -0.9976 -6.1278 15 6 3.4278 -0.9940 -6.4869 16 6 3.8582 -1.6955 -7.5940 17 6 2.9467 -2.4086 -8.3506 18 6 1.6136 -2.4097 -7.9971 19 6 1.1762 -1.6987 -6.8860 20 6 -0.2976 -1.7232 -6.5773 21 6 -0.5555 -1.3295 -5.1237 22 7 0.2233 -0.1138 -4.8395 23 6 -0.3931 1.0691 -4.5296 24 1 0.1184 1.8018 -3.9232 25 6 -1.6753 1.3264 -4.9950 26 7 -2.1591 0.6365 -6.0061 27 14 -2.7138 2.6519 -4.1865 28 1 -1.9454 3.2767 -3.0800 29 1 -3.0656 3.6870 -5.1916 30 1 -3.9565 2.0454 -3.6449 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 0.5139 0.8900 34 1 1.6053 -1.7198 1.2952 35 1 3.1263 -0.7995 1.2057 36 1 2.4882 -1.2159 3.7908 37 1 1.7275 0.1088 4.4902 38 1 1.1489 0.5385 -2.5436 39 1 3.2856 -0.9399 -3.6505 40 1 1.8326 -1.9681 -3.6509 41 1 4.1396 -0.4380 -5.8947 42 1 4.9026 -1.6874 -7.8689 43 1 3.2777 -2.9631 -9.2162 44 1 0.9034 -2.9677 -8.5892 45 1 -0.8133 -1.0235 -7.2351 46 1 -0.6833 -2.7280 -6.7497 47 1 -1.6172 -1.1299 -4.9786 48 1 -0.2380 -2.1351 -4.4617 49 1 -3.0550 0.8165 -6.3316 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733908128.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:09 Heat of formation + Delta-G solvation = -41.183241 kcal Electronic energy + Delta-G solvation = -31114.543976 eV Core-core repulsion = 27041.222835 eV Total energy + Delta-G solvation = -4073.321141 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -40.13113 -39.49299 -38.81149 -36.31392 -34.14089 -34.01832 -33.81160 -32.32260 -31.90735 -29.88830 -28.72420 -27.87428 -26.81628 -24.59980 -23.34945 -22.57120 -21.99616 -21.24358 -20.59304 -19.46008 -18.62191 -17.59973 -17.30794 -16.75035 -16.05015 -15.80308 -15.52402 -15.39544 -15.32475 -14.72824 -14.48601 -14.23816 -14.12999 -13.74300 -13.44905 -13.30652 -13.01218 -12.70809 -12.54985 -12.48300 -12.35048 -12.12183 -11.81488 -11.70659 -11.26755 -11.13274 -11.11369 -11.05241 -10.93696 -10.84144 -10.70359 -10.41295 -10.09839 -10.00909 -9.87522 -9.83976 -9.56322 -9.32576 -8.61194 -8.48220 -8.24989 -7.91531 -6.84100 -5.93420 -3.37347 1.87381 1.94640 2.53033 3.03752 3.27564 3.30754 3.40558 3.40893 3.82994 4.29897 4.36427 4.62171 4.94760 5.03654 5.20751 5.23573 5.26325 5.37304 5.42177 5.45920 5.53822 5.58255 5.69605 5.72926 5.83157 5.90633 5.98157 6.09162 6.12944 6.19810 6.24618 6.37483 6.44650 6.47681 6.55101 6.59854 6.63788 6.72116 6.76759 6.94999 6.98013 7.03918 7.13445 7.34176 7.36952 7.53464 7.61229 7.68388 8.07323 8.12680 8.27150 8.67700 9.04109 9.66162 10.24925 11.13744 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.009402 B = 0.003829 C = 0.002885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2977.463045 B = 7309.988703 C = 9703.656942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.094 4.094 3 H 0.102 0.898 4 C -0.122 4.122 5 C 0.517 3.483 6 N -0.860 5.860 7 O -0.538 6.538 8 C 0.513 3.487 9 O -0.563 6.563 10 N -0.702 5.702 11 C 0.114 3.886 12 C 0.193 3.807 13 H 0.077 0.923 14 C -0.079 4.079 15 C -0.119 4.119 16 C -0.139 4.139 17 C -0.128 4.128 18 C -0.134 4.134 19 C -0.040 4.040 20 C -0.096 4.096 21 C 0.166 3.834 22 N -0.579 5.579 23 C -0.259 4.259 24 H 0.069 0.931 25 C 0.013 3.987 26 N -0.890 5.890 27 Si 0.899 3.101 28 H -0.275 1.275 29 H -0.291 1.291 30 H -0.288 1.288 31 H 0.053 0.947 32 H 0.070 0.930 33 H 0.080 0.920 34 H 0.100 0.900 35 H 0.101 0.899 36 H 0.401 0.599 37 H 0.399 0.601 38 H 0.412 0.588 39 H 0.056 0.944 40 H 0.060 0.940 41 H 0.114 0.886 42 H 0.112 0.888 43 H 0.111 0.889 44 H 0.113 0.887 45 H 0.101 0.899 46 H 0.047 0.953 47 H 0.095 0.905 48 H 0.006 0.994 49 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.736 -5.111 8.804 13.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.115 4.115 3 H 0.120 0.880 4 C -0.162 4.162 5 C 0.303 3.697 6 N -0.423 5.423 7 O -0.415 6.415 8 C 0.299 3.701 9 O -0.443 6.443 10 N -0.353 5.353 11 C -0.012 4.012 12 C 0.084 3.916 13 H 0.095 0.905 14 C -0.081 4.081 15 C -0.137 4.137 16 C -0.158 4.158 17 C -0.146 4.146 18 C -0.152 4.152 19 C -0.040 4.040 20 C -0.135 4.135 21 C 0.040 3.960 22 N -0.299 5.299 23 C -0.388 4.388 24 H 0.086 0.914 25 C -0.187 4.187 26 N -0.533 5.533 27 Si 0.729 3.271 28 H -0.200 1.200 29 H -0.218 1.218 30 H -0.215 1.215 31 H 0.072 0.928 32 H 0.089 0.911 33 H 0.099 0.901 34 H 0.118 0.882 35 H 0.119 0.881 36 H 0.230 0.770 37 H 0.229 0.771 38 H 0.249 0.751 39 H 0.075 0.925 40 H 0.078 0.922 41 H 0.132 0.868 42 H 0.130 0.870 43 H 0.129 0.871 44 H 0.131 0.869 45 H 0.119 0.881 46 H 0.066 0.934 47 H 0.113 0.887 48 H 0.024 0.976 49 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 8.610 -5.104 8.503 13.133 hybrid contribution -0.598 0.732 0.374 1.016 sum 8.013 -4.372 8.876 12.732 Atomic orbital electron populations 1.21915 0.92077 1.02470 1.04394 1.20974 0.98588 1.00662 0.91304 0.88042 1.21445 1.03679 1.00077 0.91038 1.20790 0.78264 0.85382 0.85295 1.43906 1.60505 1.29627 1.08305 1.90735 1.39411 1.24627 1.86703 1.20486 0.80126 0.84514 0.84966 1.90634 1.39480 1.26978 1.87238 1.45925 1.52286 1.32239 1.04834 1.21877 0.97277 0.96957 0.85113 1.19619 0.87450 0.96129 0.88391 0.90548 1.20097 0.92530 0.97815 0.97688 1.21094 0.95313 0.99937 0.97387 1.20877 0.98881 0.99438 0.96564 1.20912 0.93660 1.00332 0.99740 1.21196 0.95590 1.00889 0.97569 1.19875 0.96776 0.93936 0.93401 1.21000 0.90031 1.00134 1.02309 1.20766 0.98749 0.85991 0.90473 1.44104 0.97914 1.07078 1.80850 1.19060 0.98364 0.95474 1.25920 0.91381 1.24983 0.99565 0.98243 0.95957 1.69977 1.17023 1.42734 1.23585 0.86286 0.80573 0.81249 0.79029 1.19985 1.21767 1.21478 0.92760 0.91060 0.90129 0.88153 0.88079 0.77045 0.77072 0.75062 0.92531 0.92208 0.86790 0.86981 0.87079 0.86918 0.88063 0.93410 0.88735 0.97592 0.93523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.18 8.83 37.16 0.33 -1.85 16 2 C -0.09 -1.29 2.37 -91.77 -0.22 -1.51 16 3 H 0.10 1.38 7.96 -51.93 -0.41 0.97 16 4 C -0.12 -1.37 4.52 -27.88 -0.13 -1.50 16 5 C 0.52 5.77 7.82 -10.98 -0.09 5.68 16 6 N -0.86 -5.97 8.87 31.22 0.28 -5.70 16 7 O -0.54 -8.10 14.80 5.56 0.08 -8.02 16 8 C 0.51 8.49 7.15 -10.99 -0.08 8.41 16 9 O -0.56 -10.60 15.92 5.56 0.09 -10.51 16 10 N -0.70 -12.08 5.28 -60.30 -0.32 -12.39 16 11 C 0.11 2.05 5.01 -4.04 -0.02 2.03 16 12 C 0.19 3.73 2.50 -68.93 -0.17 3.56 16 13 H 0.08 1.49 7.98 -51.93 -0.41 1.08 16 14 C -0.08 -1.50 5.16 -104.55 -0.54 -2.04 16 15 C -0.12 -1.95 9.36 -39.46 -0.37 -2.32 16 16 C -0.14 -2.10 10.05 -39.67 -0.40 -2.50 16 17 C -0.13 -1.95 10.04 -39.69 -0.40 -2.35 16 18 C -0.13 -2.28 9.59 -39.43 -0.38 -2.66 16 19 C -0.04 -0.77 5.76 -104.60 -0.60 -1.37 16 20 C -0.10 -1.99 5.77 -28.04 -0.16 -2.15 16 21 C 0.17 3.66 5.46 -3.80 -0.02 3.64 16 22 N -0.58 -12.79 2.30 -166.40 -0.38 -13.17 16 23 C -0.26 -6.22 8.72 -15.06 -0.13 -6.35 16 24 H 0.07 1.58 7.30 -52.49 -0.38 1.20 16 25 C 0.01 0.32 4.93 -17.43 -0.09 0.23 16 26 N -0.89 -23.23 10.14 55.49 0.56 -22.67 16 27 Si 0.90 20.18 29.59 -169.99 -5.03 15.15 16 28 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 29 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 30 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 31 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.07 1.11 7.56 -51.93 -0.39 0.71 16 33 H 0.08 1.18 5.95 -51.93 -0.31 0.87 16 34 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.10 1.06 7.95 -51.93 -0.41 0.64 16 36 H 0.40 1.66 8.83 -40.82 -0.36 1.30 16 37 H 0.40 2.37 8.93 -40.82 -0.36 2.01 16 38 H 0.41 7.23 6.10 -40.82 -0.25 6.98 16 39 H 0.06 0.97 8.04 -51.93 -0.42 0.55 16 40 H 0.06 1.18 7.54 -51.93 -0.39 0.79 16 41 H 0.11 1.64 8.05 -52.49 -0.42 1.22 16 42 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 43 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 44 H 0.11 1.71 8.05 -52.49 -0.42 1.29 16 45 H 0.10 2.38 7.12 -51.93 -0.37 2.01 16 46 H 0.05 0.89 8.11 -51.93 -0.42 0.47 16 47 H 0.09 2.32 5.94 -51.93 -0.31 2.01 16 48 H 0.01 0.13 7.48 -51.93 -0.39 -0.26 16 49 H 0.25 6.54 8.31 -40.82 -0.34 6.20 16 LS Contribution 390.90 15.07 5.89 5.89 Total: -1.00 -30.12 390.90 -9.56 -39.68 By element: Atomic # 1 Polarization: 22.06 SS G_CDS: -7.27 Total: 14.79 kcal Atomic # 6 Polarization: 0.41 SS G_CDS: -3.46 Total: -3.05 kcal Atomic # 7 Polarization: -54.07 SS G_CDS: 0.14 Total: -53.93 kcal Atomic # 8 Polarization: -18.70 SS G_CDS: 0.17 Total: -18.53 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.03 Total: 15.15 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -30.12 -9.56 -39.68 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733908128.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.508 kcal (2) G-P(sol) polarization free energy of solvation -30.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds