Wall clock time and date at job start Wed Apr 1 2020 04:51:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47631 * 2 1 4 4 C 1.53000 * 109.46978 * 120.00368 * 2 1 3 5 5 C 1.50706 * 109.46939 * 294.99684 * 4 2 1 6 6 N 1.34777 * 120.00064 * 179.97438 * 5 4 2 7 7 O 1.21281 * 119.99615 * 0.02562 * 5 4 2 8 8 C 1.50705 * 109.47120 * 239.99756 * 2 1 3 9 9 O 1.21275 * 120.00105 * 240.00146 * 8 2 1 10 10 N 1.34772 * 120.00007 * 60.00508 * 8 2 1 11 11 C 1.46498 * 120.00235 * 179.97438 * 10 8 2 12 12 C 1.53000 * 109.46923 * 179.97438 * 11 10 8 13 13 H 1.08993 * 109.44311 * 65.00158 * 12 11 10 14 14 C 1.50816 * 109.43457 * 184.91784 * 12 11 10 15 15 C 1.38835 * 117.80387 * 288.53307 * 14 12 11 16 16 C 1.37960 * 120.50262 * 179.50107 * 15 14 12 17 17 C 1.38263 * 119.71890 * 359.93383 * 16 15 14 18 18 C 1.37914 * 119.82777 * 0.26245 * 17 16 15 19 19 C 1.37675 * 122.34603 * 108.46990 * 14 12 11 20 20 C 1.50598 * 122.85889 * 1.51415 * 19 14 12 21 21 C 1.52789 * 110.85670 * 339.80430 * 20 19 14 22 22 N 1.46682 * 109.43981 * 305.08058 * 12 11 10 23 23 C 1.36938 * 121.33540 * 104.33305 * 22 12 11 24 24 H 1.07998 * 119.99734 * 333.16209 * 23 22 12 25 25 C 1.38810 * 120.00049 * 153.15785 * 23 22 12 26 26 N 1.31615 * 120.00057 * 341.47753 * 25 23 22 27 27 Si 1.86799 * 119.99681 * 161.48326 * 25 23 22 28 28 H 1.48496 * 109.47497 * 359.97438 * 27 25 23 29 29 H 1.48502 * 109.47435 * 120.00010 * 27 25 23 30 30 H 1.48510 * 109.46816 * 239.99721 * 27 25 23 31 31 H 1.08995 * 109.47226 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.46893 * 59.99870 * 1 2 3 33 33 H 1.09004 * 109.46855 * 300.00294 * 1 2 3 34 34 H 1.08994 * 109.47537 * 54.99280 * 4 2 1 35 35 H 1.08997 * 109.47434 * 175.00360 * 4 2 1 36 36 H 0.97000 * 119.99929 * 0.02562 * 6 5 4 37 37 H 0.97003 * 120.00028 * 180.02562 * 6 5 4 38 38 H 0.97008 * 119.99915 * 359.97438 * 10 8 2 39 39 H 1.08993 * 109.47025 * 299.99965 * 11 10 8 40 40 H 1.08998 * 109.46864 * 60.00089 * 11 10 8 41 41 H 1.08000 * 119.75076 * 359.52852 * 15 14 12 42 42 H 1.07999 * 120.13984 * 179.90514 * 16 15 14 43 43 H 1.07997 * 120.08776 * 180.24105 * 17 16 15 44 44 H 1.07995 * 119.70678 * 180.02562 * 18 17 16 45 45 H 1.08999 * 109.19882 * 100.15930 * 20 19 14 46 46 H 1.09004 * 109.19492 * 219.49729 * 20 19 14 47 47 H 1.08994 * 109.76877 * 167.07599 * 21 20 19 48 48 H 1.08999 * 109.76988 * 287.81136 * 21 20 19 49 49 H 0.97005 * 120.00206 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6413 0.0570 2.4766 6 7 1.9844 -0.3920 3.7002 7 8 1.0110 1.0869 2.3633 8 6 2.0324 -0.7105 -1.2305 9 8 2.7296 -1.6965 -1.1192 10 7 1.7069 -0.2500 -2.4546 11 6 2.1956 -0.9403 -3.6507 12 6 1.6850 -0.2194 -4.8999 13 1 2.1192 0.7793 -4.9454 14 6 2.0867 -0.9976 -6.1278 15 6 3.4278 -0.9940 -6.4869 16 6 3.8582 -1.6955 -7.5940 17 6 2.9467 -2.4086 -8.3506 18 6 1.6136 -2.4097 -7.9971 19 6 1.1762 -1.6987 -6.8860 20 6 -0.2976 -1.7232 -6.5773 21 6 -0.5555 -1.3295 -5.1237 22 7 0.2233 -0.1138 -4.8395 23 6 -0.3931 1.0691 -4.5296 24 1 0.1184 1.8018 -3.9232 25 6 -1.6753 1.3264 -4.9950 26 7 -2.1591 0.6365 -6.0061 27 14 -2.7138 2.6519 -4.1865 28 1 -1.9454 3.2767 -3.0800 29 1 -3.0656 3.6870 -5.1916 30 1 -3.9565 2.0454 -3.6449 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 0.5139 0.8900 34 1 1.6053 -1.7198 1.2952 35 1 3.1263 -0.7995 1.2057 36 1 2.4882 -1.2159 3.7908 37 1 1.7275 0.1088 4.4902 38 1 1.1489 0.5385 -2.5436 39 1 3.2856 -0.9399 -3.6505 40 1 1.8326 -1.9681 -3.6509 41 1 4.1396 -0.4380 -5.8947 42 1 4.9026 -1.6874 -7.8689 43 1 3.2777 -2.9631 -9.2162 44 1 0.9034 -2.9677 -8.5892 45 1 -0.8133 -1.0235 -7.2351 46 1 -0.6833 -2.7280 -6.7497 47 1 -1.6172 -1.1299 -4.9786 48 1 -0.2380 -2.1351 -4.4617 49 1 -3.0550 0.8165 -6.3316 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733908128.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:08 Heat of formation + Delta-G solvation = -60.720372 kcal Electronic energy + Delta-G solvation = -31115.391170 eV Core-core repulsion = 27041.222835 eV Total energy + Delta-G solvation = -4074.168334 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -41.33169 -40.77334 -40.01021 -37.83042 -35.66724 -35.17165 -34.61332 -34.00623 -33.32295 -31.50327 -30.11891 -29.03694 -28.27087 -26.16090 -24.73711 -24.08741 -23.43263 -22.61833 -21.61376 -20.70223 -20.14760 -18.78011 -18.39279 -18.02472 -17.37402 -17.10707 -16.92614 -16.67681 -16.58271 -16.09052 -15.86418 -15.70401 -15.51740 -15.12084 -14.97141 -14.56648 -14.22777 -14.06396 -13.95479 -13.78505 -13.76449 -13.52677 -13.29679 -12.95537 -12.89099 -12.72968 -12.71543 -12.54863 -12.23818 -12.14249 -12.07426 -12.04147 -11.77984 -11.52909 -11.21635 -10.98591 -10.73964 -10.53974 -10.47603 -9.92288 -9.55255 -9.29864 -8.66250 -7.83643 -5.27954 0.58268 0.63125 1.48444 1.54495 1.60661 1.66381 1.69477 2.23157 2.52045 2.79287 2.99188 3.33400 3.57345 3.60633 3.91840 3.98619 4.02136 4.09143 4.17366 4.22299 4.32306 4.37947 4.41766 4.47198 4.60249 4.67095 4.68796 4.75441 4.79165 4.81916 4.97237 4.99137 4.99890 5.07962 5.13120 5.25107 5.27155 5.32424 5.54027 5.57499 5.64432 5.70448 5.71677 5.86381 5.96055 6.01343 6.27165 6.40753 6.48220 6.68003 7.15164 7.30362 7.39454 7.82909 8.40288 9.21925 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.009402 B = 0.003829 C = 0.002885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2977.463045 B = 7309.988703 C = 9703.656942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.088 4.088 3 H 0.105 0.895 4 C -0.117 4.117 5 C 0.519 3.481 6 N -0.837 5.837 7 O -0.582 6.582 8 C 0.515 3.485 9 O -0.584 6.584 10 N -0.705 5.705 11 C 0.128 3.872 12 C 0.197 3.803 13 H 0.073 0.927 14 C -0.102 4.102 15 C -0.123 4.123 16 C -0.132 4.132 17 C -0.123 4.123 18 C -0.142 4.142 19 C -0.072 4.072 20 C -0.084 4.084 21 C 0.172 3.828 22 N -0.588 5.588 23 C -0.254 4.254 24 H 0.075 0.925 25 C -0.034 4.034 26 N -0.916 5.916 27 Si 0.951 3.049 28 H -0.264 1.264 29 H -0.300 1.300 30 H -0.297 1.297 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.080 0.920 34 H 0.108 0.892 35 H 0.113 0.887 36 H 0.418 0.582 37 H 0.408 0.592 38 H 0.410 0.590 39 H 0.070 0.930 40 H 0.040 0.960 41 H 0.134 0.866 42 H 0.149 0.851 43 H 0.146 0.854 44 H 0.125 0.875 45 H 0.067 0.933 46 H 0.059 0.941 47 H 0.065 0.935 48 H 0.006 0.994 49 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.369 -5.754 9.376 15.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.109 4.109 3 H 0.123 0.877 4 C -0.157 4.157 5 C 0.305 3.695 6 N -0.401 5.401 7 O -0.462 6.462 8 C 0.302 3.698 9 O -0.465 6.465 10 N -0.355 5.355 11 C 0.002 3.998 12 C 0.089 3.911 13 H 0.091 0.909 14 C -0.104 4.104 15 C -0.142 4.142 16 C -0.149 4.149 17 C -0.141 4.141 18 C -0.160 4.160 19 C -0.072 4.072 20 C -0.123 4.123 21 C 0.046 3.954 22 N -0.309 5.309 23 C -0.384 4.384 24 H 0.093 0.907 25 C -0.231 4.231 26 N -0.561 5.561 27 Si 0.781 3.219 28 H -0.188 1.188 29 H -0.228 1.228 30 H -0.224 1.224 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.098 0.902 34 H 0.126 0.874 35 H 0.131 0.869 36 H 0.249 0.751 37 H 0.239 0.761 38 H 0.247 0.753 39 H 0.088 0.912 40 H 0.058 0.942 41 H 0.152 0.848 42 H 0.166 0.834 43 H 0.164 0.836 44 H 0.143 0.857 45 H 0.085 0.915 46 H 0.078 0.922 47 H 0.083 0.917 48 H 0.024 0.976 49 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 11.292 -5.778 9.124 15.625 hybrid contribution -1.300 0.852 0.199 1.567 sum 9.993 -4.926 9.322 14.526 Atomic orbital electron populations 1.21825 0.92592 1.02182 1.03509 1.20940 0.97980 1.00859 0.91164 0.87717 1.21400 1.04361 1.00009 0.89933 1.20715 0.77866 0.84724 0.86246 1.43692 1.59210 1.29926 1.07270 1.90725 1.41664 1.26492 1.87357 1.20905 0.79449 0.84140 0.85287 1.90618 1.40461 1.27913 1.87513 1.45978 1.52328 1.32125 1.05097 1.21654 0.97778 0.95578 0.84833 1.19646 0.85517 0.96385 0.89565 0.90874 1.20129 0.93940 0.98669 0.97679 1.21333 0.94396 1.00217 0.98223 1.21328 1.00684 0.97674 0.95257 1.21328 0.92652 0.99720 1.00415 1.21388 0.97104 1.00594 0.96890 1.19876 0.95794 0.96185 0.95351 1.20737 0.91521 0.99727 1.00289 1.20574 0.97036 0.86112 0.91641 1.44158 0.99268 1.06443 1.80994 1.19343 0.98391 0.95757 1.24888 0.90705 1.25553 1.00745 1.00141 0.96700 1.70122 1.16750 1.44271 1.24910 0.85457 0.79074 0.79164 0.78206 1.18811 1.22764 1.22380 0.92733 0.92683 0.90159 0.87356 0.86862 0.75108 0.76071 0.75299 0.91172 0.94184 0.84850 0.83376 0.83648 0.85739 0.91491 0.92238 0.91668 0.97574 0.94333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.13 8.83 71.98 0.64 -3.49 16 2 C -0.09 -2.36 2.37 -11.54 -0.03 -2.39 16 3 H 0.10 2.78 7.96 -2.39 -0.02 2.76 16 4 C -0.12 -2.43 4.52 29.85 0.13 -2.30 16 5 C 0.52 10.73 7.82 87.66 0.69 11.41 16 6 N -0.84 -9.63 8.87 -173.53 -1.54 -11.17 16 7 O -0.58 -17.03 14.80 -3.03 -0.04 -17.08 16 8 C 0.51 16.70 7.15 87.66 0.63 17.32 16 9 O -0.58 -21.35 15.92 -3.02 -0.05 -21.40 16 10 N -0.71 -24.17 5.28 -463.08 -2.44 -26.61 16 11 C 0.13 4.57 5.01 86.38 0.43 5.00 16 12 C 0.20 7.63 2.50 44.25 0.11 7.74 16 13 H 0.07 2.85 7.98 -2.39 -0.02 2.83 16 14 C -0.10 -3.81 5.16 -19.82 -0.10 -3.91 16 15 C -0.12 -3.75 9.36 22.35 0.21 -3.54 16 16 C -0.13 -3.44 10.05 22.21 0.22 -3.22 16 17 C -0.12 -3.32 10.04 22.20 0.22 -3.09 16 18 C -0.14 -4.60 9.59 22.37 0.21 -4.39 16 19 C -0.07 -2.79 5.76 -19.85 -0.11 -2.90 16 20 C -0.08 -3.61 5.77 29.75 0.17 -3.43 16 21 C 0.17 7.93 5.46 86.19 0.47 8.40 16 22 N -0.59 -26.64 2.30 -680.36 -1.56 -28.20 16 23 C -0.25 -12.45 8.72 84.03 0.73 -11.72 16 24 H 0.08 3.50 7.30 -2.91 -0.02 3.48 16 25 C -0.03 -1.77 4.93 84.86 0.42 -1.35 16 26 N -0.92 -49.86 10.14 21.65 0.22 -49.64 16 27 Si 0.95 42.61 29.59 68.60 2.03 44.64 16 28 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 29 H -0.30 -13.80 7.11 99.48 0.71 -13.09 16 30 H -0.30 -13.57 7.11 99.48 0.71 -12.86 16 31 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.05 1.73 7.56 -2.39 -0.02 1.72 16 33 H 0.08 2.35 5.95 -2.39 -0.01 2.33 16 34 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.11 2.11 7.95 -2.39 -0.02 2.09 16 36 H 0.42 2.24 8.83 -92.71 -0.82 1.43 16 37 H 0.41 3.90 8.93 -92.71 -0.83 3.08 16 38 H 0.41 14.48 6.10 -92.70 -0.57 13.92 16 39 H 0.07 2.31 8.04 -2.39 -0.02 2.29 16 40 H 0.04 1.59 7.54 -2.39 -0.02 1.57 16 41 H 0.13 3.45 8.05 -2.91 -0.02 3.43 16 42 H 0.15 2.83 8.06 -2.91 -0.02 2.80 16 43 H 0.15 2.90 8.06 -2.91 -0.02 2.88 16 44 H 0.12 3.63 8.05 -2.91 -0.02 3.60 16 45 H 0.07 3.32 7.12 -2.39 -0.02 3.30 16 46 H 0.06 2.30 8.11 -2.38 -0.02 2.28 16 47 H 0.07 3.38 5.94 -2.39 -0.01 3.37 16 48 H 0.01 0.28 7.48 -2.39 -0.02 0.27 16 49 H 0.25 13.31 8.31 -92.70 -0.77 12.53 16 Total: -1.00 -66.67 390.90 0.44 -66.23 By element: Atomic # 1 Polarization: 40.31 SS G_CDS: -1.21 Total: 39.10 kcal Atomic # 6 Polarization: -0.91 SS G_CDS: 5.05 Total: 4.14 kcal Atomic # 7 Polarization: -110.30 SS G_CDS: -5.33 Total: -115.63 kcal Atomic # 8 Polarization: -38.38 SS G_CDS: -0.09 Total: -38.47 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.64 kcal Total: -66.67 0.44 -66.23 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733908128.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.509 kcal (2) G-P(sol) polarization free energy of solvation -66.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds